HEADER TRANSCRIPTION REGULATOR 21-JUL-06 2HS5 TITLE STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A PUTATIVE TITLE 2 TRANSCRIPTIONAL REGULATOR GNTR FROM RHODOCOCCUS SP. RHA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR GNTR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS APC6050, TRANSCRIPTIONAL REGULATOR, GNTR, RHODOCOCCUS SP. RHA1, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,T.SKARINA,A.ONOPRIYENKO,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 20-NOV-24 2HS5 1 REMARK LINK REVDAT 3 13-JUL-11 2HS5 1 VERSN REVDAT 2 24-FEB-09 2HS5 1 VERSN REVDAT 1 22-AUG-06 2HS5 0 JRNL AUTH K.TAN,T.SKARINA,A.ONOPRIYENKO,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR GNTR FROM RHODOCOCCUS SP. RHA1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 15289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 926 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.009 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1649 ; 0.037 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2240 ; 2.599 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 6.737 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;34.303 ;22.874 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 260 ;19.604 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;22.403 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.229 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1287 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 803 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1155 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1081 ; 2.148 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1645 ; 2.965 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 665 ; 4.701 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 595 ; 7.243 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16123 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 38.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TACSIMATE, 0.1M SODIUM ACETATE, 2% REMARK 280 PEG5000 MME, 2MM CYSTEINE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.02600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.02600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.63000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 54.02600 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 54.02600 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 53.63000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.02600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 54.02600 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 53.63000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 54.02600 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.02600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 53.63000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 54.02600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.02600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.63000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.02600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 54.02600 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 53.63000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 54.02600 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 54.02600 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 53.63000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.02600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.02600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 53.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). THE BIOLOGICAL MOLECULE REMARK 300 FOR THE PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 LEU A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 9 REMARK 465 ASP A 10 REMARK 465 ALA A 11 REMARK 465 HIS A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 HIS A 18 REMARK 465 ARG A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 GLU A 23 REMARK 465 ARG A 24 REMARK 465 PRO A 232 REMARK 465 VAL A 233 REMARK 465 SER A 234 REMARK 465 GLY A 235 REMARK 465 GLY A 236 REMARK 465 SER A 237 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 49 CG ARG A 49 CD 0.161 REMARK 500 GLU A 52 CG GLU A 52 CD 0.104 REMARK 500 GLU A 99 CG GLU A 99 CD 0.093 REMARK 500 TYR A 101 CE2 TYR A 101 CD2 0.120 REMARK 500 ARG A 105 CZ ARG A 105 NH1 0.090 REMARK 500 GLU A 108 CG GLU A 108 CD 0.106 REMARK 500 GLU A 134 CB GLU A 134 CG -0.121 REMARK 500 TYR A 136 CD1 TYR A 136 CE1 0.115 REMARK 500 VAL A 144 CB VAL A 144 CG2 0.152 REMARK 500 GLU A 166 CG GLU A 166 CD 0.138 REMARK 500 ARG A 195 CD ARG A 195 NE -0.111 REMARK 500 GLU A 198 CD GLU A 198 OE1 0.088 REMARK 500 ALA A 222 CA ALA A 222 CB -0.151 REMARK 500 TYR A 230 CE1 TYR A 230 CZ 0.090 REMARK 500 TYR A 230 CE2 TYR A 230 CD2 0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 CG - CD - NE ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG A 49 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 63 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 135 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 VAL A 138 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 VAL A 138 CA - CB - CG1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 163 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 195 CB - CG - CD ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 76 -8.51 -59.44 REMARK 500 LEU A 83 -74.29 -7.69 REMARK 500 ALA A 118 29.53 -47.65 REMARK 500 THR A 119 -42.66 171.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 184 ALA A 185 -149.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 238 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6050 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN HAS NOT BEEN DEPOSITED REMARK 999 AT ANY SEQUENCE DATABASE AT THE TIME OF PROCESSING. DBREF 2HS5 A 2 235 UNP Q0SB06 Q0SB06_RHOSR 2 235 SEQRES 1 A 239 GLY HIS LEU THR SER SER ASN ALA LEU ARG GLY ASP ALA SEQRES 2 A 239 HIS SER ARG LEU ALA ALA HIS ARG GLY LEU LEU GLU ARG SEQRES 3 A 239 THR SER ARG THR THR ARG VAL ALA GLY ILE LEU ARG ASP SEQRES 4 A 239 ALA ILE ILE ASP GLY THR PHE ARG PRO GLY ALA ARG LEU SEQRES 5 A 239 SER GLU PRO ASP ILE CYS ALA ALA LEU ASP VAL SER ARG SEQRES 6 A 239 ASN THR VAL ARG GLU ALA PHE GLN ILE LEU ILE GLU ASP SEQRES 7 A 239 ARG LEU VAL ALA HIS GLU LEU ASN ARG GLY VAL PHE VAL SEQRES 8 A 239 ARG VAL PRO THR ALA GLU ASP ILE THR GLU LEU TYR ILE SEQRES 9 A 239 CYS ARG ARG VAL VAL GLU CYS ALA GLY VAL ASN GLY PHE SEQRES 10 A 239 ASP PRO ALA THR GLY ASP LEU SER ARG VAL ALA GLU ALA SEQRES 11 A 239 LEU ASP LEU ALA ASP GLU ARG TYR ALA VAL GLU ASP TRP SEQRES 12 A 239 THR GLY VAL GLY THR ALA ASP ILE HIS PHE HIS SER ALA SEQRES 13 A 239 LEU ALA SER LEU ASN ASN SER ASN ARG ILE ASP GLU LEU SEQRES 14 A 239 MSE ARG SER VAL TRP ASN GLU ALA ARG LEU VAL PHE HIS SEQRES 15 A 239 VAL MSE ASP ASP ALA HIS ARG PHE HIS GLY PRO TYR LEU SEQRES 16 A 239 THR ARG ASN HIS GLU ILE TYR ASP ALA LEU ALA ALA GLY SEQRES 17 A 239 ASN THR GLU ALA ALA GLY GLN LEU LEU LYS THR TYR LEU SEQRES 18 A 239 GLU ASP ALA GLU ALA GLN ILE LEU GLY ALA TYR ARG PRO SEQRES 19 A 239 VAL SER GLY GLY SER MODRES 2HS5 MSE A 168 MET SELENOMETHIONINE MODRES 2HS5 MSE A 182 MET SELENOMETHIONINE HET MSE A 168 8 HET MSE A 182 8 HET ACT A 238 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 HOH *88(H2 O) HELIX 1 1 THR A 25 ASP A 41 1 17 HELIX 2 2 SER A 51 ASP A 60 1 10 HELIX 3 3 SER A 62 ASP A 76 1 15 HELIX 4 4 THR A 93 GLY A 114 1 22 HELIX 5 5 LEU A 122 VAL A 138 1 17 HELIX 6 6 ASP A 140 SER A 157 1 18 HELIX 7 7 LEU A 158 ASN A 160 5 3 HELIX 8 8 SER A 161 ASP A 183 1 23 HELIX 9 9 ASP A 184 ALA A 205 1 22 HELIX 10 10 ASN A 207 ALA A 229 1 23 SHEET 1 A 3 ARG A 49 LEU A 50 0 SHEET 2 A 3 GLY A 86 VAL A 89 -1 O VAL A 87 N LEU A 50 SHEET 3 A 3 VAL A 79 GLU A 82 -1 N GLU A 82 O GLY A 86 LINK C LEU A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N ARG A 169 1555 1555 1.33 LINK C VAL A 181 N MSE A 182 1555 1555 1.32 LINK C MSE A 182 N ASP A 183 1555 1555 1.33 SITE 1 AC1 8 TYR A 101 ARG A 104 ASP A 148 HIS A 152 SITE 2 AC1 8 PHE A 179 PHE A 188 TYR A 218 ALA A 222 CRYST1 108.052 108.052 107.260 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009255 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009323 0.00000