HEADER OXIDOREDUCTASE 25-JUL-06 2HTD TITLE CRYSTAL STRUCTURE OF A PUTATIVE PYRIDOXAMINE 5'-PHOSPHATE OXIDASE TITLE 2 (LDB0262) FROM LACTOBACILLUS DELBRUECKII SUBSP. AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED FLAVIN-NUCLEOTIDE-BINDING PROTEIN FROM COG3576 COMPND 3 FAMILY STRUCTURALLY RELATED TO PYRIDOXINE 5'-PHOSPHATE OXIDASE; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS; SOURCE 3 ORGANISM_TAXID: 321956; SOURCE 4 STRAIN: ATCC BAA-365; SOURCE 5 GENE: ZP_00387536.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PUTATIVE PYRIDOXAMINE 5'-PHOSPHATE OXIDASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 18-OCT-17 2HTD 1 REMARK REVDAT 4 13-JUL-11 2HTD 1 VERSN REVDAT 3 28-JUL-10 2HTD 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2HTD 1 VERSN REVDAT 1 15-AUG-06 2HTD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PREDICTED FLAVIN-NUCLEOTIDE-BINDING JRNL TITL 2 PROTEIN FROM COG3576 FAMILY STRUCTURALLY RELATED TO JRNL TITL 3 PYRIDOXINE 5'-PHOSPHATE OXIDASE (ZP_00387536.1) FROM JRNL TITL 4 LACTOBACILLUS DELBRUECKII BULGARICUS ATCC BAA-365 AT 1.60 A JRNL TITL 5 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2068 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1874 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : 2.28000 REMARK 3 B33 (A**2) : -1.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.448 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1984 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1263 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2715 ; 1.566 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3134 ; 0.873 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 6.222 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;36.097 ;26.023 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;12.389 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2214 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 356 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 359 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1309 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 982 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1078 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 150 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1288 ; 1.954 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 499 ; 0.792 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2033 ; 2.788 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 777 ; 4.972 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 673 ; 6.490 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 26 4 REMARK 3 1 B 1 B 26 4 REMARK 3 2 A 27 A 32 5 REMARK 3 2 B 27 B 32 5 REMARK 3 3 A 33 A 74 4 REMARK 3 3 B 33 B 74 4 REMARK 3 4 A 75 A 80 5 REMARK 3 4 B 75 B 80 5 REMARK 3 5 A 85 A 121 4 REMARK 3 5 B 85 B 121 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1331 ; 0.350 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 57 ; 1.050 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1331 ; 1.600 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 57 ; 3.130 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5012 10.6725 40.3016 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0473 REMARK 3 T33: 0.1285 T12: 0.0114 REMARK 3 T13: 0.0162 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.3336 L22: 3.3060 REMARK 3 L33: 2.3700 L12: 0.9041 REMARK 3 L13: 1.5053 L23: 0.0626 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.1084 S13: -0.1452 REMARK 3 S21: -0.0642 S22: -0.0808 S23: -0.2313 REMARK 3 S31: 0.1406 S32: 0.2666 S33: 0.0778 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2780 23.5649 43.2999 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.0208 REMARK 3 T33: 0.0891 T12: 0.0024 REMARK 3 T13: -0.0124 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.2583 L22: 1.1490 REMARK 3 L33: 1.7617 L12: 0.1719 REMARK 3 L13: -0.0610 L23: -0.4694 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0040 S13: 0.0630 REMARK 3 S21: 0.1605 S22: 0.0208 S23: 0.0542 REMARK 3 S31: -0.1461 S32: -0.0970 S33: -0.0124 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8334 23.8634 39.0704 REMARK 3 T TENSOR REMARK 3 T11: 0.0755 T22: -0.0001 REMARK 3 T33: 0.0967 T12: -0.0127 REMARK 3 T13: 0.0025 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 5.4415 L22: 1.2366 REMARK 3 L33: 1.4155 L12: -0.8379 REMARK 3 L13: 0.5996 L23: -0.0588 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: -0.0163 S13: 0.0036 REMARK 3 S21: 0.0088 S22: 0.0091 S23: 0.0060 REMARK 3 S31: -0.0731 S32: -0.0864 S33: 0.0400 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3020 19.3654 48.1396 REMARK 3 T TENSOR REMARK 3 T11: 0.0521 T22: 0.0475 REMARK 3 T33: 0.0536 T12: 0.0035 REMARK 3 T13: -0.0078 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.5769 L22: 3.1160 REMARK 3 L33: 4.1353 L12: -0.4023 REMARK 3 L13: -0.9095 L23: 1.8882 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: -0.2306 S13: -0.0391 REMARK 3 S21: 0.3506 S22: -0.0813 S23: 0.1398 REMARK 3 S31: 0.1640 S32: -0.3823 S33: 0.1239 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 18 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0932 42.1297 38.4851 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.0178 REMARK 3 T33: 0.1139 T12: 0.0264 REMARK 3 T13: -0.0024 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.1114 L22: 4.1765 REMARK 3 L33: 3.4908 L12: 0.1945 REMARK 3 L13: 0.0538 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: -0.0813 S12: -0.0136 S13: 0.1517 REMARK 3 S21: 0.0092 S22: 0.0803 S23: 0.1858 REMARK 3 S31: -0.1824 S32: -0.2650 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3588 29.4852 29.3960 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: 0.0128 REMARK 3 T33: 0.0385 T12: -0.0026 REMARK 3 T13: -0.0113 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.7028 L22: 1.2741 REMARK 3 L33: 2.5877 L12: 0.0255 REMARK 3 L13: -0.6639 L23: -0.4058 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: 0.2235 S13: -0.0727 REMARK 3 S21: -0.1556 S22: 0.0307 S23: -0.0740 REMARK 3 S31: -0.0048 S32: 0.0237 S33: 0.0007 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1217 35.2683 27.5009 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.0099 REMARK 3 T33: 0.1149 T12: -0.0084 REMARK 3 T13: -0.0239 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.6928 L22: 0.8069 REMARK 3 L33: 1.7345 L12: -0.0972 REMARK 3 L13: -0.4370 L23: -0.4388 REMARK 3 S TENSOR REMARK 3 S11: -0.0352 S12: 0.3017 S13: 0.0208 REMARK 3 S21: -0.0510 S22: -0.0503 S23: -0.0112 REMARK 3 S31: 0.0386 S32: -0.1587 S33: 0.0855 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 98 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6708 34.3961 23.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0575 REMARK 3 T33: 0.0567 T12: -0.0230 REMARK 3 T13: -0.0168 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 3.8546 L22: 1.2916 REMARK 3 L33: 3.5524 L12: -1.4810 REMARK 3 L13: -1.7205 L23: 0.5661 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.3304 S13: 0.0513 REMARK 3 S21: -0.0482 S22: -0.0835 S23: 0.0090 REMARK 3 S31: -0.0254 S32: 0.1127 S33: 0.0955 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: (1) HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. (2) A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.7 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. (3). SULFATE IONS ARE PRESENT IN REMARK 3 THE CRYSTALLIZATION SOLUTION. (4) ATOM RECORD CONTAINS REMARK 3 RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2HTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97929,0.97911 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29681 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.595 REMARK 200 RESOLUTION RANGE LOW (A) : 39.253 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.98700 REMARK 200 R SYM FOR SHELL (I) : 0.98700 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M (NH4)2SO4, 0.1M CITRATE PH 4.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.56150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CD CE NZ REMARK 470 LYS A 3 NZ REMARK 470 GLU A 12 CD OE1 OE2 REMARK 470 LYS A 99 CE NZ REMARK 470 LYS A 103 CD CE NZ REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 GLN B -1 CG CD OE1 NE2 REMARK 470 LYS B 2 CD CE NZ REMARK 470 LYS B 3 NZ REMARK 470 LYS B 8 CE NZ REMARK 470 VAL B 76 CG1 REMARK 470 LYS B 99 CE NZ REMARK 470 LYS B 103 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 183 O HOH B 196 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 93 40.81 -152.64 REMARK 500 ASP B 93 36.75 -147.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 126 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 367187 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. REMARK 999 A SUITABLE DATABASE REFERENCE WAS NOT AVAILABLE AT REMARK 999 THE TIME OF PROCESSING. DBREF 2HTD A 1 121 UNP Q1GBW8 Q1GBW8_LACDE 1 121 DBREF 2HTD B 1 121 UNP Q1GBW8 Q1GBW8_LACDE 1 121 SEQRES 1 A 140 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 140 ASN LEU TYR PHE GLN GLY MSE LYS LYS LEU ASN THR ASN SEQRES 3 A 140 LYS LEU THR GLU GLU GLN VAL ASN LEU PHE LYS ASN ASN SEQRES 4 A 140 LEU VAL TYR LEU ALA THR VAL ASP ALA ASP GLY ASN PRO SEQRES 5 A 140 GLN VAL GLY PRO LYS GLY SER MSE THR VAL LEU ASP PRO SEQRES 6 A 140 SER HIS LEU GLN TYR LEU GLU LYS THR LYS GLY GLU ALA SEQRES 7 A 140 TYR GLU ASN ILE LYS ARG GLY SER LYS VAL ALA LEU VAL SEQRES 8 A 140 ALA ALA ASP VAL PRO SER HIS THR ALA VAL ARG VAL LEU SEQRES 9 A 140 ALA THR ALA GLU VAL HIS GLU ASP ASP ASP TYR ALA LYS SEQRES 10 A 140 LYS VAL LEU ALA LYS THR GLU PHE PRO ASN ALA PHE VAL SEQRES 11 A 140 VAL ASN LEU ASN ILE GLU GLU VAL PHE ALA SEQRES 1 B 140 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 140 ASN LEU TYR PHE GLN GLY MSE LYS LYS LEU ASN THR ASN SEQRES 3 B 140 LYS LEU THR GLU GLU GLN VAL ASN LEU PHE LYS ASN ASN SEQRES 4 B 140 LEU VAL TYR LEU ALA THR VAL ASP ALA ASP GLY ASN PRO SEQRES 5 B 140 GLN VAL GLY PRO LYS GLY SER MSE THR VAL LEU ASP PRO SEQRES 6 B 140 SER HIS LEU GLN TYR LEU GLU LYS THR LYS GLY GLU ALA SEQRES 7 B 140 TYR GLU ASN ILE LYS ARG GLY SER LYS VAL ALA LEU VAL SEQRES 8 B 140 ALA ALA ASP VAL PRO SER HIS THR ALA VAL ARG VAL LEU SEQRES 9 B 140 ALA THR ALA GLU VAL HIS GLU ASP ASP ASP TYR ALA LYS SEQRES 10 B 140 LYS VAL LEU ALA LYS THR GLU PHE PRO ASN ALA PHE VAL SEQRES 11 B 140 VAL ASN LEU ASN ILE GLU GLU VAL PHE ALA MODRES 2HTD MSE A 1 MET SELENOMETHIONINE MODRES 2HTD MSE A 41 MET SELENOMETHIONINE MODRES 2HTD MSE B 1 MET SELENOMETHIONINE MODRES 2HTD MSE B 41 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 41 8 HET MSE B 1 13 HET MSE B 41 8 HET SO4 A 122 5 HET SO4 A 123 5 HET SO4 A 124 5 HET SO4 A 125 5 HET SO4 A 126 5 HET CL B 122 1 HET SO4 B 123 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 6(O4 S 2-) FORMUL 8 CL CL 1- FORMUL 10 HOH *205(H2 O) HELIX 1 1 THR A 10 ASN A 20 1 11 HELIX 2 2 GLY A 57 ARG A 65 1 9 HELIX 3 3 ASP A 94 ALA A 102 1 9 HELIX 4 4 THR B 10 ASN B 20 1 11 HELIX 5 5 GLY B 57 ARG B 65 1 9 HELIX 6 6 ASP B 94 ALA B 102 1 9 SHEET 1 A 6 LYS A 2 LYS A 3 0 SHEET 2 A 6 PHE A 110 ALA A 121 -1 O ALA A 121 N LYS A 2 SHEET 3 A 6 THR A 80 HIS A 91 -1 N LEU A 85 O GLU A 117 SHEET 4 A 6 VAL A 69 ASP A 75 -1 N VAL A 69 O ALA A 86 SHEET 5 A 6 VAL A 22 VAL A 27 -1 N ALA A 25 O ALA A 70 SHEET 6 A 6 PRO A 33 LYS A 38 -1 O GLY A 36 N LEU A 24 SHEET 1 B 4 LYS A 2 LYS A 3 0 SHEET 2 B 4 PHE A 110 ALA A 121 -1 O ALA A 121 N LYS A 2 SHEET 3 B 4 HIS A 48 GLU A 53 -1 N GLU A 53 O PHE A 110 SHEET 4 B 4 THR A 42 ASP A 45 -1 N LEU A 44 O HIS A 48 SHEET 1 C 6 LYS B 2 LYS B 3 0 SHEET 2 C 6 PHE B 110 ALA B 121 -1 O ALA B 121 N LYS B 2 SHEET 3 C 6 THR B 80 HIS B 91 -1 N LEU B 85 O GLU B 117 SHEET 4 C 6 VAL B 69 ASP B 75 -1 N VAL B 69 O ALA B 86 SHEET 5 C 6 VAL B 22 VAL B 27 -1 N ALA B 25 O ALA B 70 SHEET 6 C 6 PRO B 33 LYS B 38 -1 O LYS B 38 N VAL B 22 SHEET 1 D 4 LYS B 2 LYS B 3 0 SHEET 2 D 4 PHE B 110 ALA B 121 -1 O ALA B 121 N LYS B 2 SHEET 3 D 4 HIS B 48 GLU B 53 -1 N GLU B 53 O PHE B 110 SHEET 4 D 4 THR B 42 ASP B 45 -1 N LEU B 44 O HIS B 48 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C SER A 40 N MSE A 41 1555 1555 1.34 LINK C MSE A 41 N THR A 42 1555 1555 1.35 LINK C GLY B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N LYS B 2 1555 1555 1.32 LINK C SER B 40 N MSE B 41 1555 1555 1.33 LINK C MSE B 41 N THR B 42 1555 1555 1.33 SITE 1 AC1 1 GLU B 11 SITE 1 AC2 7 HOH A 189 HOH A 206 GLY B 39 SER B 40 SITE 2 AC2 7 LYS B 54 HOH B 178 HOH B 182 SITE 1 AC3 6 MSE A 1 ARG A 83 THR B 55 GLY B 57 SITE 2 AC3 6 GLU B 58 ALA B 59 SITE 1 AC4 4 THR A 6 ASN A 7 LYS A 8 HOH A 167 SITE 1 AC5 9 GLN A 34 GLU A 58 ALA A 59 HOH A 143 SITE 2 AC5 9 HOH A 164 HOH A 186 GLY B 0 MSE B 1 SITE 3 AC5 9 ARG B 83 SITE 1 AC6 7 LYS A 38 GLY A 39 SER A 40 LYS A 54 SITE 2 AC6 7 HOH A 175 HOH A 205 HOH B 188 SITE 1 AC7 5 LEU A 44 TYR A 96 HOH A 180 HOH A 238 SITE 2 AC7 5 HOH A 239 CRYST1 34.104 71.123 47.031 90.00 90.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029320 0.000000 0.000440 0.00000 SCALE2 0.000000 0.014060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021270 0.00000