HEADER TRANSFERASE 25-JUL-06 2HTF TITLE THE SOLUTION STRUCTURE OF THE BRCT DOMAIN FROM HUMAN POLYMERASE TITLE 2 REVEALS HOMOLOGY WITH THE TDT BRCT DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE MU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT DOMAIN; COMPND 5 SYNONYM: POL MU; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BRCT DOMAIN, ALPHA-BETA-ALPHA SANDWICH, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 11 MDLTYP MINIMIZED AVERAGE AUTHOR E.F.DEROSE,M.W.CLARKSON,S.A.GILMORE,D.A.RAMSDEN,G.A.MUELLER, AUTHOR 2 R.E.LONDON,A.L.LEE REVDAT 4 09-MAR-22 2HTF 1 REMARK SEQADV REVDAT 3 24-FEB-09 2HTF 1 VERSN REVDAT 2 04-NOV-08 2HTF 1 JRNL REVDAT 1 27-FEB-07 2HTF 0 JRNL AUTH E.F.DEROSE,M.W.CLARKSON,S.A.GILMORE,C.J.GALBAN,A.TRIPATHY, JRNL AUTH 2 J.M.HAVENER,G.A.MUELLER,D.A.RAMSDEN,R.E.LONDON,A.L.LEE JRNL TITL SOLUTION STRUCTURE OF POLYMERASE MU'S BRCT DOMAIN REVEALS AN JRNL TITL 2 ELEMENT ESSENTIAL FOR ITS ROLE IN NONHOMOLOGOUS END JOINING. JRNL REF BIOCHEMISTRY V. 46 12100 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17915942 JRNL DOI 10.1021/BI7007728 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 1.1C, VNMRJ 1.1C, ARIA 2.0A REMARK 3 AUTHORS : VARIAN (VNMR), HABECK, RIEPING, LINGE, AND NILGES REMARK 3 (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE INITIAL STRUCTURES WERE COMPUTED REMARK 3 USING THE AUTO NOEASSIGN FEATURE OF CYANA 2.1; 1503 NOE DISTANCE REMARK 3 RESTRAINTS WERE ASSIGNED, AND 147 DIHEDRAL ANGLE RESTRAINTS WERE REMARK 3 USED IN THE CALCULATION. THE 20 BEST CYANA STRUCTURES WERE REMARK 3 REFINED IN EXPLICIT SOLVENT USING ARIA 2.0A WITH THE 1506 NOE REMARK 3 DISTANCE RESTRAINTS, 147 DIHEDRAL ANGLE RESTRAINTS, 42 H-BOND REMARK 3 RESTRAINTS, AND 48 RESIDUAL DIPOLAR COUPLING RESTRAINTS. REMARK 4 REMARK 4 2HTF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038739. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.9 REMARK 210 IONIC STRENGTH : 50 MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM POLYMERASE MU BRCT DOMAIN, REMARK 210 25 MM D-TRIS, 50 MM KCL, 0.02% REMARK 210 NAN3, 5 MM DTT, PH 7.9, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2003, 2004, NMRVIEW REMARK 210 5.0.4, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS FOLLOWED REMARK 210 BY MOLECULAR DYNAMICS REFINEMENT REMARK 210 IN EXPLICIT WATER SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 24 86.93 -59.49 REMARK 500 1 ARG A 26 -82.23 61.89 REMARK 500 1 PRO A 28 -167.47 -71.24 REMARK 500 1 ALA A 61 166.37 62.96 REMARK 500 1 ALA A 76 -73.09 -60.64 REMARK 500 1 PRO A 92 106.27 -55.71 REMARK 500 1 PRO A 97 -179.50 -69.52 REMARK 500 1 PRO A 114 93.53 -63.74 REMARK 500 1 LEU A 123 22.93 -72.24 REMARK 500 2 PRO A 23 87.71 -53.49 REMARK 500 2 PRO A 28 49.95 -77.25 REMARK 500 2 PRO A 37 9.13 -68.93 REMARK 500 2 ARG A 38 36.27 -149.38 REMARK 500 2 LYS A 54 -60.76 -93.29 REMARK 500 2 HIS A 68 100.57 169.77 REMARK 500 2 PRO A 97 -167.70 -77.44 REMARK 500 2 LEU A 123 -25.39 48.79 REMARK 500 3 PRO A 23 66.45 -67.50 REMARK 500 3 THR A 25 -120.81 -122.41 REMARK 500 3 ARG A 26 -69.10 -178.82 REMARK 500 3 PRO A 37 46.68 -71.58 REMARK 500 3 ARG A 38 -45.88 -174.09 REMARK 500 3 MET A 39 -71.48 -83.15 REMARK 500 3 ASP A 60 -161.84 -109.76 REMARK 500 3 ILE A 102 -1.17 -58.27 REMARK 500 3 PRO A 114 95.13 -68.10 REMARK 500 3 ARG A 122 33.26 -86.67 REMARK 500 3 LEU A 123 6.67 -56.44 REMARK 500 4 PRO A 23 102.29 -40.07 REMARK 500 4 ARG A 26 -55.34 77.22 REMARK 500 4 PRO A 28 -159.09 -84.02 REMARK 500 4 MET A 39 128.60 -171.17 REMARK 500 4 LYS A 54 -62.16 -96.60 REMARK 500 4 ASP A 60 39.23 -86.31 REMARK 500 4 PRO A 97 -166.23 -64.98 REMARK 500 4 LEU A 100 155.71 170.98 REMARK 500 4 ARG A 122 31.87 -79.05 REMARK 500 4 LEU A 123 15.93 -62.37 REMARK 500 5 PRO A 23 63.28 -69.55 REMARK 500 5 ARG A 26 -78.59 -115.01 REMARK 500 5 ARG A 38 43.75 -141.18 REMARK 500 5 CYS A 62 -36.97 75.70 REMARK 500 5 HIS A 68 105.87 -161.59 REMARK 500 5 LEU A 100 -175.02 -172.80 REMARK 500 5 PRO A 114 95.31 -66.82 REMARK 500 6 PRO A 37 49.15 -74.47 REMARK 500 6 ARG A 38 -40.90 -175.13 REMARK 500 6 HIS A 68 91.55 157.22 REMARK 500 6 LEU A 100 -167.42 -172.26 REMARK 500 6 ASP A 101 -165.04 -119.15 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2HTF A 21 124 UNP Q9NP87 DPOLM_HUMAN 21 124 SEQADV 2HTF GLY A 20 UNP Q9NP87 CLONING ARTIFACT SEQRES 1 A 105 GLY THR PRO PRO SER THR ARG PHE PRO GLY VAL ALA ILE SEQRES 2 A 105 TYR LEU VAL GLU PRO ARG MET GLY ARG SER ARG ARG ALA SEQRES 3 A 105 PHE LEU THR GLY LEU ALA ARG SER LYS GLY PHE ARG VAL SEQRES 4 A 105 LEU ASP ALA CYS SER SER GLU ALA THR HIS VAL VAL MET SEQRES 5 A 105 GLU GLU THR SER ALA GLU GLU ALA VAL SER TRP GLN GLU SEQRES 6 A 105 ARG ARG MET ALA ALA ALA PRO PRO GLY CYS THR PRO PRO SEQRES 7 A 105 ALA LEU LEU ASP ILE SER TRP LEU THR GLU SER LEU GLY SEQRES 8 A 105 ALA GLY GLN PRO VAL PRO VAL GLU CYS ARG HIS ARG LEU SEQRES 9 A 105 GLU HELIX 1 1 GLU A 36 MET A 39 5 4 HELIX 2 2 GLY A 40 GLY A 55 1 16 HELIX 3 3 SER A 75 ALA A 90 1 16 HELIX 4 4 ILE A 102 GLY A 112 1 11 SHEET 1 A 4 ARG A 57 LEU A 59 0 SHEET 2 A 4 ALA A 31 LEU A 34 1 N ILE A 32 O ARG A 57 SHEET 3 A 4 HIS A 68 MET A 71 1 O HIS A 68 N TYR A 33 SHEET 4 A 4 ALA A 98 ASP A 101 1 O LEU A 100 N VAL A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1