HEADER RNA 26-JUL-06 2HUA TITLE SOLUTION STRUCTURE OF CSFV IRES DOMAIN IIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSFV IRES DOMAIN IIA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 70-84 AND 111-127; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: PREPARED BY IN VITRO TRANSCRIPTION USING T7 RNA SOURCE 4 POLYMERASE KEYWDS RNA HAIRPIN, RNA EXPDTA SOLUTION NMR NUMMDL 11 AUTHOR N.LOCKER,L.E.EASTON,P.J.LUKAVSKY REVDAT 4 29-MAY-24 2HUA 1 REMARK REVDAT 3 09-MAR-22 2HUA 1 REMARK REVDAT 2 24-FEB-09 2HUA 1 VERSN REVDAT 1 17-APR-07 2HUA 0 JRNL AUTH N.LOCKER,L.E.EASTON,P.J.LUKAVSKY JRNL TITL HCV AND CSFV IRES DOMAIN II MEDIATE EIF2 RELEASE DURING 80S JRNL TITL 2 RIBOSOME ASSEMBLY. JRNL REF EMBO J. V. 26 795 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17255934 JRNL DOI 10.1038/SJ.EMBOJ.7601549 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR XPLOR-NIH, PALES 1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE (X-PLOR), REMARK 3 ZWECKSTETTER, BAX (PALES) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HUA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038769. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 288; 278 REMARK 210 PH : 6.0; 6.0; 6.0 REMARK 210 IONIC STRENGTH : 50MM SODIUM CHLORIDE; 50MM REMARK 210 SODIUM CHLORIDE; 50MM SODIUM REMARK 210 CHLORIDE REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM CSFV IRES DOMAIN IIA RNA U REMARK 210 -15N,13C, 10MM PHOSPHATE BUFFER, REMARK 210 50MM SODIUM CHLORIDE, 100% D2O; REMARK 210 1.5MM CSFV IRES DOMAIN IIA RNA, REMARK 210 10MM PHOSPHATE BUFFER, 50MM REMARK 210 SODIUM CHLORIDE, 96% H2O, 4% D2O; REMARK 210 1.5MM CSFV IRES DOMAIN IIA RNA, REMARK 210 10MM PHOSPHATE BUFFER, 50MM REMARK 210 SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D HMQC REMARK 210 TOCSY; 3D HCP; 2D HP-COSY; 2D REMARK 210 DQF-COSY; 2D NOESY; 2D S-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, SPARKY 3 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESTRAINT VIOLATION AND REMARK 210 TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS SOLVED USING TRIPLE RESONANCE, REMARK 210 MULTIDIMENSIONAL NMR SPECTROSCOPY AND TROSY-TYPE EXPERIMENTS TO REMARK 210 MEASURE RESIDUAL DIPOLAR COUPLINGS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 G A 1 H41 C A 40 1.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 2HUA A 1 40 PDB 2HUA 2HUA 1 40 SEQRES 1 A 40 G G C C U C C A G C G A C SEQRES 2 A 40 G G C C U U C G G G A C U SEQRES 3 A 40 A G C A A A C G G A G G C SEQRES 4 A 40 C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1