HEADER UNKNOWN FUNCTION 26-JUL-06 2HUH TITLE CRYSTAL STRUCTURE OF A DUF2027 FAMILY PROTEIN (BT_2179) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON AT 1.54 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DNA MISMATCH REPAIR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: NP_811092.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PUTATIVE DNA MISMATCH REPAIR PROTEIN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 18-OCT-17 2HUH 1 REMARK REVDAT 5 13-JUL-11 2HUH 1 VERSN REVDAT 4 23-MAR-11 2HUH 1 HEADER TITLE KEYWDS REVDAT 3 24-FEB-09 2HUH 1 VERSN REVDAT 2 03-OCT-06 2HUH 1 TITLE REVDAT 1 29-AUG-06 2HUH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE DNA MISMATCH REPAIR PROTEIN JRNL TITL 2 (NP_811092.1) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT JRNL TITL 3 1.54 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 23764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1506 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1254 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1121 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1727 ; 1.493 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2620 ; 0.742 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 7.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;38.188 ;25.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 203 ;11.378 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 4.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 196 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1421 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 253 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 200 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1100 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 618 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 790 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 126 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 816 ; 1.966 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 303 ; 0.429 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1255 ; 2.548 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 542 ; 4.366 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 462 ; 6.096 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2570 10.6040 53.8780 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0311 REMARK 3 T33: 0.0245 T12: 0.0101 REMARK 3 T13: -0.0133 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6646 L22: 0.8039 REMARK 3 L33: 1.2147 L12: 0.3927 REMARK 3 L13: 0.5166 L23: 0.4366 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: -0.0482 S13: 0.0458 REMARK 3 S21: 0.0318 S22: 0.0210 S23: -0.0130 REMARK 3 S31: -0.1017 S32: -0.0553 S33: 0.0276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION REMARK 3 DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE REMARK 3 MSE REMARK 3 RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING REMARK 3 POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. MODEL REPRESENTS A PROTEOLYTIC FRAGMENT OF THE FULL-LENGTH REMARK 3 PROTEIN, THOUGH THE EXACT BOUNDRIES ARE UNKOWN. RESIDUES 81-227 REMARK 3 ARE MODELED BASED ON DENSITY. REMARK 3 5. UNKNOWN DENSITY NEAR ASP 89 WAS NOT MODELED. REMARK 4 REMARK 4 2HUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97922,0.97905 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23849 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.002 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.76700 REMARK 200 R SYM FOR SHELL (I) : 0.76700 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.0% PEG-3000, 0.2M NACL, 0.1M HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.64750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.52150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.52150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.47125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.52150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.52150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.82375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.52150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.52150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.47125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.52150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.52150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.82375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.64750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.64750 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 81 NE CZ NH1 NH2 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 132 CD CE NZ REMARK 470 LYS A 217 CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLN A 224 CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MSE A 106 CA CB CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 154 OD1 ASP A 156 2.09 REMARK 500 O HOH A 297 O HOH A 374 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 106 SE MSE A 106 CE -0.463 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 219 -2.78 72.25 REMARK 500 ALA A 222 44.54 -84.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 203 O REMARK 620 2 HOH A 275 O 91.2 REMARK 620 3 HOH A 358 O 172.1 90.9 REMARK 620 4 HOH A 322 O 88.0 94.9 84.3 REMARK 620 5 HOH A 279 O 92.1 172.9 86.7 91.5 REMARK 620 6 PHE A 206 O 88.1 79.5 99.8 173.1 94.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 359113 RELATED DB: TARGETDB DBREF 2HUH A 81 227 UNP Q8A5Q9 Q8A5Q9_BACTN 81 227 SEQADV 2HUH MSE A 105 UNP Q8A5Q9 MET 105 MODIFIED RESIDUE SEQADV 2HUH MSE A 106 UNP Q8A5Q9 MET 106 MODIFIED RESIDUE SEQADV 2HUH MSE A 161 UNP Q8A5Q9 MET 161 MODIFIED RESIDUE SEQRES 1 A 147 ARG GLN PRO GLU VAL ARG GLY GLY ASP THR LEU ASN VAL SEQRES 2 A 147 PHE LEU ALA TYR VAL PRO GLU ASP ALA LYS ALA MSE MSE SEQRES 3 A 147 THR THR PRO PHE GLU ALA TYR LEU VAL ASN ASP SER ASN SEQRES 4 A 147 TYR TYR LEU TYR TYR THR TYR LEU SER ALA GLU GLY LYS SEQRES 5 A 147 ALA TRP ASN ASN ARG SER HIS GLY LEU VAL GLU PRO ASN SEQRES 6 A 147 THR LYS LEU LEU LEU GLU GLU PHE THR LYS ASP VAL LEU SEQRES 7 A 147 ASN GLU MSE GLU ARG VAL ALA VAL GLN LEU ILE ALA PHE SEQRES 8 A 147 LYS ASP GLY LYS PRO ALA ALA ILE LYS PRO ALA VAL SER SEQRES 9 A 147 VAL GLU LEU ARG ILE ASP THR VAL LYS PHE TYR LYS LEU SEQRES 10 A 147 HIS THR PHE SER ALA SER ASP PHE PHE GLU GLU PRO ALA SEQRES 11 A 147 LEU ILE TYR ASP ILE VAL LYS ASP ASP VAL PRO ALA LYS SEQRES 12 A 147 GLN VAL TYR VAL MODRES 2HUH MSE A 105 MET SELENOMETHIONINE MODRES 2HUH MSE A 106 MET SELENOMETHIONINE MODRES 2HUH MSE A 161 MET SELENOMETHIONINE HET MSE A 105 8 HET MSE A 106 13 HET MSE A 161 8 HET MG A 1 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 HOH *163(H2 O) HELIX 1 1 THR A 154 MSE A 161 5 8 HELIX 2 2 ASP A 190 PHE A 200 5 11 SHEET 1 A 5 THR A 146 PHE A 153 0 SHEET 2 A 5 PHE A 110 ASN A 116 -1 N ALA A 112 O LEU A 150 SHEET 3 A 5 VAL A 93 PRO A 99 -1 N PHE A 94 O VAL A 115 SHEET 4 A 5 PHE A 206 LYS A 217 -1 O TYR A 213 N LEU A 95 SHEET 5 A 5 SER A 201 SER A 203 -1 N SER A 201 O ALA A 210 SHEET 1 B 5 THR A 146 PHE A 153 0 SHEET 2 B 5 PHE A 110 ASN A 116 -1 N ALA A 112 O LEU A 150 SHEET 3 B 5 VAL A 93 PRO A 99 -1 N PHE A 94 O VAL A 115 SHEET 4 B 5 PHE A 206 LYS A 217 -1 O TYR A 213 N LEU A 95 SHEET 5 B 5 VAL A 220 PRO A 221 -1 O VAL A 220 N LYS A 217 SHEET 1 C 4 ALA A 133 VAL A 142 0 SHEET 2 C 4 TYR A 121 GLU A 130 -1 N SER A 128 O ASN A 135 SHEET 3 C 4 ARG A 163 PHE A 171 -1 O PHE A 171 N TYR A 121 SHEET 4 C 4 VAL A 183 ARG A 188 -1 O VAL A 183 N LEU A 168 LINK MG MG A 1 O SER A 203 1555 1555 2.21 LINK MG MG A 1 O HOH A 275 1555 1555 2.21 LINK MG MG A 1 O HOH A 358 1555 1555 2.87 LINK MG MG A 1 O HOH A 322 1555 1555 2.27 LINK MG MG A 1 O HOH A 279 1555 1555 2.37 LINK MG MG A 1 O PHE A 206 1555 1555 2.37 LINK C ALA A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N MSE A 106 1555 1555 1.35 LINK C MSE A 106 N THR A 107 1555 1555 1.34 LINK C GLU A 160 N MSE A 161 1555 1555 1.33 LINK C MSE A 161 N GLU A 162 1555 1555 1.33 SITE 1 AC1 6 SER A 203 PHE A 206 HOH A 275 HOH A 279 SITE 2 AC1 6 HOH A 322 HOH A 358 CRYST1 43.043 43.043 167.295 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023230 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005980 0.00000