HEADER SIGNALING PROTEIN 27-JUL-06 2HUP TITLE CRYSTAL STRUCTURE OF HUMAN RAB43 IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-43; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RAS-RELATED PROTEIN RAB-41; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE-3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,Y.SHEN,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2HUP 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2HUP 1 REMARK REVDAT 2 24-FEB-09 2HUP 1 VERSN REVDAT 1 08-AUG-06 2HUP 0 JRNL AUTH J.WANG,Y.SHEN,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF HUMAN RAB43 IN COMPLEX WITH GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.428 REMARK 3 FREE R VALUE TEST SET COUNT : 2019 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1552 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2455 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98400 REMARK 3 B22 (A**2) : 0.98400 REMARK 3 B33 (A**2) : -1.47700 REMARK 3 B12 (A**2) : 0.49200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2554 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1665 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3464 ; 1.410 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4049 ; 0.966 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.130 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;33.986 ;23.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;13.451 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.568 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2787 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 544 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 469 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1686 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1220 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1268 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 105 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1645 ; 2.402 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 651 ; 0.715 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2525 ; 3.291 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1103 ; 2.377 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 939 ; 3.087 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. MOLPROBITY HAS ALSO BEEN USED FOR REFINEMENT. REMARK 4 REMARK 4 2HUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.95500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2EW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG8000, 0.2M NACL, 0.1M TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.74400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.37200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.37200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 96.74400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 GLY A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 ASP A 10 REMARK 465 PRO A 11 REMARK 465 ASP A 12 REMARK 465 GLU A 13 REMARK 465 GLN A 14 REMARK 465 SER A 44 REMARK 465 GLU A 45 REMARK 465 ARG A 46 REMARK 465 GLN A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 THR A 50 REMARK 465 ILE A 51 REMARK 465 GLY A 52 REMARK 465 VAL A 53 REMARK 465 PRO A 187 REMARK 465 LEU A 188 REMARK 465 PHE A 189 REMARK 465 SER A 190 REMARK 465 MET B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 SER B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 3 REMARK 465 VAL B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 ASP B 10 REMARK 465 PRO B 11 REMARK 465 ASP B 12 REMARK 465 GLU B 13 REMARK 465 GLN B 14 REMARK 465 SER B 44 REMARK 465 GLU B 45 REMARK 465 ARG B 46 REMARK 465 GLN B 47 REMARK 465 GLY B 48 REMARK 465 SER B 49 REMARK 465 THR B 50 REMARK 465 ILE B 51 REMARK 465 GLY B 52 REMARK 465 VAL B 53 REMARK 465 GLN B 63 REMARK 465 GLY B 64 REMARK 465 LYS B 65 REMARK 465 GLY B 185 REMARK 465 GLY B 186 REMARK 465 PRO B 187 REMARK 465 LEU B 188 REMARK 465 PHE B 189 REMARK 465 SER B 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 36 CD OE1 NE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 68 CE NZ REMARK 470 ARG A 89 CD NE CZ NH1 NH2 REMARK 470 GLU A 114 CD OE1 OE2 REMARK 470 LYS A 118 CE NZ REMARK 470 GLU A 137 CD OE1 OE2 REMARK 470 GLU A 151 CD OE1 OE2 REMARK 470 ILE A 155 CG1 CD1 REMARK 470 GLU A 170 CD OE1 OE2 REMARK 470 GLU A 171 CD OE1 OE2 REMARK 470 ARG A 175 NE CZ NH1 NH2 REMARK 470 LYS B 20 CE NZ REMARK 470 GLN B 36 CD OE1 NE2 REMARK 470 LYS B 58 CE NZ REMARK 470 LEU B 60 CD1 CD2 REMARK 470 GLU B 61 CD OE1 OE2 REMARK 470 ARG B 66 CD NE CZ NH1 NH2 REMARK 470 LYS B 68 CE NZ REMARK 470 GLN B 70 CD OE1 NE2 REMARK 470 GLU B 114 CD OE1 OE2 REMARK 470 ARG B 117 CD NE CZ NH1 NH2 REMARK 470 LYS B 118 CE NZ REMARK 470 SER B 136 OG REMARK 470 LYS B 164 NZ REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 132 34.47 71.19 REMARK 500 LEU A 135 58.36 -94.01 REMARK 500 LYS B 132 40.54 77.45 REMARK 500 LEU B 135 46.93 -92.90 REMARK 500 SER B 166 -3.66 74.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 121 SER B 122 144.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 32 OG1 REMARK 620 2 GDP A 201 O3B 95.5 REMARK 620 3 HOH A 301 O 89.0 91.4 REMARK 620 4 HOH A 302 O 169.9 94.4 92.7 REMARK 620 5 HOH A 303 O 93.5 97.2 170.7 83.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 32 OG1 REMARK 620 2 GDP B 201 O3B 93.4 REMARK 620 3 HOH B 305 O 87.2 84.8 REMARK 620 4 HOH B 306 O 177.7 85.1 94.5 REMARK 620 5 HOH B 307 O 93.5 90.0 174.8 84.7 REMARK 620 6 HOH B 308 O 89.8 173.6 89.8 91.9 95.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 403 DBREF 2HUP A 9 190 UNP Q86YS6 RAB43_HUMAN 7 190 DBREF 2HUP B 9 190 UNP Q86YS6 RAB43_HUMAN 7 190 SEQADV 2HUP MET A -10 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP GLY A -9 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER A -8 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER A -7 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS A -6 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS A -5 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS A -4 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS A -3 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS A -2 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS A -1 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER A 0 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER A 1 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP GLY A 2 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP LEU A 3 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP VAL A 4 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP PRO A 5 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP ARG A 6 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP GLY A 7 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER A 8 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP MET B -10 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP GLY B -9 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER B -8 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER B -7 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS B -6 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS B -5 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS B -4 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS B -3 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS B -2 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP HIS B -1 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER B 0 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER B 1 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP GLY B 2 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP LEU B 3 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP VAL B 4 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP PRO B 5 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP ARG B 6 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP GLY B 7 UNP Q86YS6 CLONING ARTIFACT SEQADV 2HUP SER B 8 UNP Q86YS6 CLONING ARTIFACT SEQRES 1 A 201 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 201 LEU VAL PRO ARG GLY SER GLY ASP PRO ASP GLU GLN TYR SEQRES 3 A 201 ASP PHE LEU PHE LYS LEU VAL LEU VAL GLY ASP ALA SER SEQRES 4 A 201 VAL GLY LYS THR CYS VAL VAL GLN ARG PHE LYS THR GLY SEQRES 5 A 201 ALA PHE SER GLU ARG GLN GLY SER THR ILE GLY VAL ASP SEQRES 6 A 201 PHE THR MET LYS THR LEU GLU ILE GLN GLY LYS ARG VAL SEQRES 7 A 201 LYS LEU GLN ILE TRP ASP THR ALA GLY GLN GLU ARG PHE SEQRES 8 A 201 ARG THR ILE THR GLN SER TYR TYR ARG SER ALA ASN GLY SEQRES 9 A 201 ALA ILE LEU ALA TYR ASP ILE THR LYS ARG SER SER PHE SEQRES 10 A 201 LEU SER VAL PRO HIS TRP ILE GLU ASP VAL ARG LYS TYR SEQRES 11 A 201 ALA GLY SER ASN ILE VAL GLN LEU LEU ILE GLY ASN LYS SEQRES 12 A 201 SER ASP LEU SER GLU LEU ARG GLU VAL SER LEU ALA GLU SEQRES 13 A 201 ALA GLN SER LEU ALA GLU HIS TYR ASP ILE LEU CYS ALA SEQRES 14 A 201 ILE GLU THR SER ALA LYS ASP SER SER ASN VAL GLU GLU SEQRES 15 A 201 ALA PHE LEU ARG VAL ALA THR GLU LEU ILE MET ARG HIS SEQRES 16 A 201 GLY GLY PRO LEU PHE SER SEQRES 1 B 201 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 201 LEU VAL PRO ARG GLY SER GLY ASP PRO ASP GLU GLN TYR SEQRES 3 B 201 ASP PHE LEU PHE LYS LEU VAL LEU VAL GLY ASP ALA SER SEQRES 4 B 201 VAL GLY LYS THR CYS VAL VAL GLN ARG PHE LYS THR GLY SEQRES 5 B 201 ALA PHE SER GLU ARG GLN GLY SER THR ILE GLY VAL ASP SEQRES 6 B 201 PHE THR MET LYS THR LEU GLU ILE GLN GLY LYS ARG VAL SEQRES 7 B 201 LYS LEU GLN ILE TRP ASP THR ALA GLY GLN GLU ARG PHE SEQRES 8 B 201 ARG THR ILE THR GLN SER TYR TYR ARG SER ALA ASN GLY SEQRES 9 B 201 ALA ILE LEU ALA TYR ASP ILE THR LYS ARG SER SER PHE SEQRES 10 B 201 LEU SER VAL PRO HIS TRP ILE GLU ASP VAL ARG LYS TYR SEQRES 11 B 201 ALA GLY SER ASN ILE VAL GLN LEU LEU ILE GLY ASN LYS SEQRES 12 B 201 SER ASP LEU SER GLU LEU ARG GLU VAL SER LEU ALA GLU SEQRES 13 B 201 ALA GLN SER LEU ALA GLU HIS TYR ASP ILE LEU CYS ALA SEQRES 14 B 201 ILE GLU THR SER ALA LYS ASP SER SER ASN VAL GLU GLU SEQRES 15 B 201 ALA PHE LEU ARG VAL ALA THR GLU LEU ILE MET ARG HIS SEQRES 16 B 201 GLY GLY PRO LEU PHE SER HET MG A 202 1 HET GDP A 201 28 HET UNX A 401 1 HET UNX A 402 1 HET MG B 202 1 HET GDP B 201 28 HET UNX B 403 1 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 UNX 3(X) FORMUL 10 HOH *76(H2 O) HELIX 1 1 GLY A 30 GLY A 41 1 12 HELIX 2 2 GLN A 77 ARG A 79 5 3 HELIX 3 3 PHE A 80 ARG A 89 1 10 HELIX 4 4 LYS A 102 SER A 108 1 7 HELIX 5 5 SER A 108 ALA A 120 1 13 HELIX 6 6 LEU A 135 ARG A 139 5 5 HELIX 7 7 SER A 142 TYR A 153 1 12 HELIX 8 8 ASN A 168 HIS A 184 1 17 HELIX 9 9 GLY B 30 GLY B 41 1 12 HELIX 10 10 GLN B 77 ARG B 79 5 3 HELIX 11 11 PHE B 80 ARG B 89 1 10 HELIX 12 12 LYS B 102 ALA B 120 1 19 HELIX 13 13 LYS B 132 ARG B 139 5 8 HELIX 14 14 SER B 142 TYR B 153 1 12 HELIX 15 15 ASN B 168 HIS B 184 1 17 SHEET 1 A 6 PHE A 55 ILE A 62 0 SHEET 2 A 6 LYS A 65 TRP A 72 -1 O VAL A 67 N LEU A 60 SHEET 3 A 6 PHE A 17 GLY A 25 1 N LEU A 21 O GLN A 70 SHEET 4 A 6 GLY A 93 ASP A 99 1 O ILE A 95 N VAL A 22 SHEET 5 A 6 VAL A 125 ASN A 131 1 O ASN A 131 N TYR A 98 SHEET 6 A 6 CYS A 157 GLU A 160 1 O CYS A 157 N LEU A 128 SHEET 1 B 6 PHE B 55 LEU B 60 0 SHEET 2 B 6 VAL B 67 TRP B 72 -1 O LEU B 69 N LYS B 58 SHEET 3 B 6 PHE B 17 GLY B 25 1 N LEU B 21 O GLN B 70 SHEET 4 B 6 GLY B 93 ASP B 99 1 O ALA B 97 N VAL B 24 SHEET 5 B 6 VAL B 125 ASN B 131 1 O ASN B 131 N TYR B 98 SHEET 6 B 6 ALA B 158 GLU B 160 1 O ILE B 159 N LEU B 128 LINK OG1 THR A 32 MG MG A 202 1555 1555 2.01 LINK O3B GDP A 201 MG MG A 202 1555 1555 2.03 LINK MG MG A 202 O HOH A 301 1555 1555 2.25 LINK MG MG A 202 O HOH A 302 1555 1555 2.28 LINK MG MG A 202 O HOH A 303 1555 1555 2.17 LINK OG1 THR B 32 MG MG B 202 1555 1555 2.09 LINK O3B GDP B 201 MG MG B 202 1555 1555 2.20 LINK MG MG B 202 O HOH B 305 1555 1555 2.28 LINK MG MG B 202 O HOH B 306 1555 1555 2.26 LINK MG MG B 202 O HOH B 307 1555 1555 2.01 LINK MG MG B 202 O HOH B 308 1555 1555 2.20 SITE 1 AC1 5 THR A 32 GDP A 201 HOH A 301 HOH A 302 SITE 2 AC1 5 HOH A 303 SITE 1 AC2 6 THR B 32 GDP B 201 HOH B 305 HOH B 306 SITE 2 AC2 6 HOH B 307 HOH B 308 SITE 1 AC3 17 SER A 28 VAL A 29 GLY A 30 LYS A 31 SITE 2 AC3 17 THR A 32 CYS A 33 PHE A 43 ASN A 131 SITE 3 AC3 17 LYS A 132 ASP A 134 LEU A 135 SER A 162 SITE 4 AC3 17 ALA A 163 LYS A 164 MG A 202 HOH A 301 SITE 5 AC3 17 HOH A 302 SITE 1 AC4 18 SER B 28 VAL B 29 GLY B 30 LYS B 31 SITE 2 AC4 18 THR B 32 CYS B 33 PHE B 43 ASN B 131 SITE 3 AC4 18 LYS B 132 ASP B 134 LEU B 135 SER B 162 SITE 4 AC4 18 ALA B 163 LYS B 164 MG B 202 HOH B 305 SITE 5 AC4 18 HOH B 306 HOH B 307 SITE 1 AC5 2 GLU A 137 LEU A 138 SITE 1 AC6 3 GLU A 145 SER A 148 LEU A 149 SITE 1 AC7 4 CYS B 33 ARG B 37 ALA B 42 PHE B 43 CRYST1 66.447 66.447 145.116 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015050 0.008690 0.000000 0.00000 SCALE2 0.000000 0.017370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006890 0.00000