HEADER HYDROLASE 31-JUL-06 2HVV TITLE CRYSTAL STRUCTURE OF DCMP DEAMINASE FROM STREPTOCOCCUS MUTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYCYTIDYLATE DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.4.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 GENE: COMEB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS 3-LAYER (ALPHA-BETA)-SANDWICH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.F.HOU,Z.Q.GAO,L.F.LI,Y.H.LIANG,X.D.SU,Y.H.DONG REVDAT 5 18-OCT-17 2HVV 1 REMARK REVDAT 4 13-JUL-11 2HVV 1 VERSN REVDAT 3 24-FEB-09 2HVV 1 VERSN REVDAT 2 11-MAR-08 2HVV 1 JRNL REVDAT 1 11-SEP-07 2HVV 0 JRNL AUTH H.F.HOU,Y.H.LIANG,L.F.LI,X.D.SU,Y.H.DONG JRNL TITL CRYSTAL STRUCTURES OF STREPTOCOCCUS MUTANS JRNL TITL 2 2'-DEOXYCYTIDYLATE DEAMINASE AND ITS COMPLEX WITH SUBSTRATE JRNL TITL 3 ANALOG AND ALLOSTERIC REGULATOR DCTP X MG2+. JRNL REF J.MOL.BIOL. V. 377 220 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18255096 JRNL DOI 10.1016/J.JMB.2007.12.064 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 9574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.481 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.944 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.175 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 51.91 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : SO4.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2829, 1.2835, 1.2000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9958 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.06, RESOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-CL, PH8.5, 15% GLYCEROL, REMARK 280 1.5M AMMONIUM SULFATE , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.61650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.61650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.61650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.61650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.61650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.61650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 56.61650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 56.61650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 56.61650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 56.61650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 56.61650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 56.61650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 56.61650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 56.61650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 56.61650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 56.61650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 56.61650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 56.61650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -635.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 518 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 MET B -33 REMARK 465 GLY B -32 REMARK 465 SER B -31 REMARK 465 SER B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 SER B -23 REMARK 465 SER B -22 REMARK 465 GLY B -21 REMARK 465 LEU B -20 REMARK 465 VAL B -19 REMARK 465 PRO B -18 REMARK 465 ARG B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 120 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG A 144 CD NE CZ NH1 NH2 REMARK 480 ILE B 85 CD1 REMARK 480 TYR B 120 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS B 146 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 37 19.38 57.18 REMARK 500 ASN A 45 91.09 -67.32 REMARK 500 ASP A 52 153.27 -49.31 REMARK 500 GLU A 62 100.81 44.27 REMARK 500 CYS A 66 94.98 -52.17 REMARK 500 TYR A 120 -117.81 -76.27 REMARK 500 LYS A 133 8.92 -68.87 REMARK 500 LYS A 146 -145.40 -66.79 REMARK 500 CYS B 54 -16.10 -42.50 REMARK 500 ASP B 63 58.56 38.79 REMARK 500 ILE B 67 2.83 -68.14 REMARK 500 TYR B 120 -86.57 -68.94 REMARK 500 HIS B 140 105.42 -164.77 REMARK 500 LYS B 146 -158.60 -53.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 102 SG REMARK 620 2 HIS A 71 ND1 105.8 REMARK 620 3 CYS A 99 SG 109.7 119.9 REMARK 620 4 HOH A 505 O 120.3 79.7 118.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 ND1 REMARK 620 2 CYS A 54 SG 93.1 REMARK 620 3 CYS A 66 SG 129.5 47.7 REMARK 620 4 CYS A 24 SG 149.7 108.2 80.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 59 ND1 REMARK 620 2 CYS B 66 SG 117.2 REMARK 620 3 CYS B 24 SG 140.8 101.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 99 SG REMARK 620 2 HIS B 71 ND1 101.7 REMARK 620 3 CYS B 102 SG 101.8 104.6 REMARK 620 4 HOH B 504 O 117.2 85.0 137.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HVW RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH LIGANDS IN DIFFERENT SPACE GROUP AT REMARK 900 1.67 A RESOLUTION DBREF 2HVV A 1 150 UNP Q8DSE5 Q8DSE5_STRMU 1 150 DBREF 2HVV B 1 150 UNP Q8DSE5 Q8DSE5_STRMU 1 150 SEQADV 2HVV MET A -33 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY A -32 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER A -31 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER A -30 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS A -29 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS A -28 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS A -27 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS A -26 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS A -25 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS A -24 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER A -23 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER A -22 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY A -21 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV LEU A -20 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV VAL A -19 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV PRO A -18 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV ARG A -17 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY A -16 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER A -15 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS A -14 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV MET A -13 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV ALA A -12 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER A -11 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV MET A -10 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV THR A -9 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY A -8 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY A -7 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLN A -6 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLN A -5 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV MET A -4 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY A -3 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV ARG A -2 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY A -1 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER A 0 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV MET B -33 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY B -32 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER B -31 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER B -30 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS B -29 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS B -28 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS B -27 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS B -26 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS B -25 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS B -24 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER B -23 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER B -22 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY B -21 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV LEU B -20 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV VAL B -19 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV PRO B -18 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV ARG B -17 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY B -16 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER B -15 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV HIS B -14 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV MET B -13 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV ALA B -12 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER B -11 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV MET B -10 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV THR B -9 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY B -8 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY B -7 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLN B -6 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLN B -5 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV MET B -4 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY B -3 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV ARG B -2 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV GLY B -1 UNP Q8DSE5 EXPRESSION TAG SEQADV 2HVV SER B 0 UNP Q8DSE5 EXPRESSION TAG SEQRES 1 A 184 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 184 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 184 GLY GLN GLN MET GLY ARG GLY SER MET THR ASN ARG LEU SEQRES 4 A 184 SER TRP GLN ASP TYR PHE MET ALA ASN ALA GLU LEU ILE SEQRES 5 A 184 SER LYS ARG SER THR CYS ASN ARG ALA TYR VAL GLY ALA SEQRES 6 A 184 VAL LEU VAL LYS ASN ASN ARG ILE ILE ALA THR GLY TYR SEQRES 7 A 184 ASN GLY GLY VAL ALA ASP THR ASP ASN CYS ASP ASP VAL SEQRES 8 A 184 GLY HIS GLU MET GLU ASP GLY HIS CYS ILE ARG THR VAL SEQRES 9 A 184 HIS ALA GLU MET ASN ALA LEU ILE GLN CYS ALA LYS GLU SEQRES 10 A 184 GLY ILE SER ALA ASN ASN THR GLU ILE TYR VAL THR HIS SEQRES 11 A 184 PHE PRO CYS ILE ASN CYS THR LYS ALA LEU LEU GLN ALA SEQRES 12 A 184 GLY VAL LYS LYS ILE THR TYR ASN THR ALA TYR ARG ILE SEQRES 13 A 184 HIS PRO PHE ALA ILE GLU LEU MET THR GLN LYS GLU VAL SEQRES 14 A 184 GLU TYR VAL GLN HIS ASP VAL PRO ARG VAL LYS LEU GLY SEQRES 15 A 184 GLU LYS SEQRES 1 B 184 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 184 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 184 GLY GLN GLN MET GLY ARG GLY SER MET THR ASN ARG LEU SEQRES 4 B 184 SER TRP GLN ASP TYR PHE MET ALA ASN ALA GLU LEU ILE SEQRES 5 B 184 SER LYS ARG SER THR CYS ASN ARG ALA TYR VAL GLY ALA SEQRES 6 B 184 VAL LEU VAL LYS ASN ASN ARG ILE ILE ALA THR GLY TYR SEQRES 7 B 184 ASN GLY GLY VAL ALA ASP THR ASP ASN CYS ASP ASP VAL SEQRES 8 B 184 GLY HIS GLU MET GLU ASP GLY HIS CYS ILE ARG THR VAL SEQRES 9 B 184 HIS ALA GLU MET ASN ALA LEU ILE GLN CYS ALA LYS GLU SEQRES 10 B 184 GLY ILE SER ALA ASN ASN THR GLU ILE TYR VAL THR HIS SEQRES 11 B 184 PHE PRO CYS ILE ASN CYS THR LYS ALA LEU LEU GLN ALA SEQRES 12 B 184 GLY VAL LYS LYS ILE THR TYR ASN THR ALA TYR ARG ILE SEQRES 13 B 184 HIS PRO PHE ALA ILE GLU LEU MET THR GLN LYS GLU VAL SEQRES 14 B 184 GLU TYR VAL GLN HIS ASP VAL PRO ARG VAL LYS LEU GLY SEQRES 15 B 184 GLU LYS HET SO4 A 151 5 HET SO4 A 152 5 HET SO4 A 153 5 HET SO4 A 154 5 HET ZN A 501 1 HET ZN A 504 1 HET SO4 B 151 5 HET SO4 B 152 5 HET SO4 B 153 5 HET SO4 B 154 5 HET ZN B 502 1 HET ZN B 503 1 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 3 SO4 8(O4 S 2-) FORMUL 7 ZN 4(ZN 2+) FORMUL 15 HOH *34(H2 O) HELIX 1 1 SER A 6 SER A 19 1 14 HELIX 2 2 LYS A 20 SER A 22 5 3 HELIX 3 3 ASN A 53 GLY A 58 1 6 HELIX 4 4 HIS A 71 GLU A 83 1 13 HELIX 5 5 CYS A 99 GLY A 110 1 12 HELIX 6 6 HIS A 123 LYS A 133 1 11 HELIX 7 7 SER B 6 LYS B 20 1 15 HELIX 8 8 HIS B 71 GLY B 84 1 14 HELIX 9 9 CYS B 99 GLY B 110 1 12 HELIX 10 10 HIS B 123 LYS B 133 1 11 SHEET 1 A 5 ARG A 38 TYR A 44 0 SHEET 2 A 5 GLY A 30 LYS A 35 -1 N LEU A 33 O ALA A 41 SHEET 3 A 5 GLU A 91 HIS A 96 -1 O GLU A 91 N VAL A 34 SHEET 4 A 5 LYS A 113 THR A 118 1 O THR A 115 N ILE A 92 SHEET 5 A 5 GLU A 136 GLN A 139 1 O GLU A 136 N ILE A 114 SHEET 1 B 5 ARG B 38 TYR B 44 0 SHEET 2 B 5 GLY B 30 LYS B 35 -1 N ALA B 31 O GLY B 43 SHEET 3 B 5 THR B 90 HIS B 96 -1 O TYR B 93 N VAL B 32 SHEET 4 B 5 VAL B 111 THR B 118 1 O LYS B 112 N THR B 90 SHEET 5 B 5 GLU B 136 GLN B 139 1 O VAL B 138 N ILE B 114 SSBOND 1 CYS A 54 CYS A 66 1555 1555 2.06 SSBOND 2 CYS B 54 CYS B 66 1555 1555 2.06 LINK ZN ZN A 501 SG CYS A 102 1555 1555 2.52 LINK ZN ZN A 501 ND1 HIS A 71 1555 1555 2.05 LINK ZN ZN A 501 SG CYS A 99 1555 1555 2.55 LINK ZN ZN A 501 O HOH A 505 1555 1555 2.36 LINK ZN ZN A 504 ND1 HIS A 59 1555 1555 2.52 LINK ZN ZN A 504 SG CYS A 54 1555 1555 2.72 LINK ZN ZN A 504 SG CYS A 66 1555 1555 2.26 LINK ZN ZN A 504 SG CYS A 24 1555 1555 2.40 LINK ZN ZN B 502 ND1 HIS B 59 1555 1555 2.35 LINK ZN ZN B 502 SG CYS B 66 1555 1555 2.36 LINK ZN ZN B 502 SG CYS B 24 1555 1555 2.49 LINK ZN ZN B 503 SG CYS B 99 1555 1555 2.70 LINK ZN ZN B 503 ND1 HIS B 71 1555 1555 2.20 LINK ZN ZN B 503 SG CYS B 102 1555 1555 2.45 LINK ZN ZN B 503 O HOH B 504 1555 1555 2.48 SITE 1 AC1 4 TYR A 44 GLY A 47 ASN A 75 GLN B 108 SITE 1 AC2 2 LYS A 82 ASN B 88 SITE 1 AC3 4 CYS A 99 ILE A 100 HIS A 123 HOH A 515 SITE 1 AC4 3 SER A 6 TRP A 7 ARG B 21 SITE 1 AC5 5 HIS A 71 GLU A 73 CYS A 99 CYS A 102 SITE 2 AC5 5 HOH A 505 SITE 1 AC6 4 CYS A 24 CYS A 54 HIS A 59 CYS A 66 SITE 1 AC7 4 THR A 69 HIS A 71 ASN B 101 LYS B 104 SITE 1 AC8 4 ASN A 101 ILE B 67 THR B 69 HIS B 71 SITE 1 AC9 5 GLN A 108 TYR B 44 GLY B 46 GLY B 47 SITE 2 AC9 5 ASN B 75 SITE 1 BC1 3 ARG A 21 SER B 6 TRP B 7 SITE 1 BC2 4 CYS B 24 CYS B 54 HIS B 59 CYS B 66 SITE 1 BC3 5 HIS B 71 GLU B 73 CYS B 99 CYS B 102 SITE 2 BC3 5 HOH B 504 CRYST1 113.233 113.233 113.233 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008831 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008831 0.00000