HEADER TRANSFERASE 31-JUL-06 2HW2 TITLE CRYSTAL STRUCTURE OF RIFAMPIN ADP-RIBOSYL TRANSFERASE IN COMPLEX WITH TITLE 2 RIFAMPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIFAMPIN ADP-RIBOSYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.30; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 GENE: ARR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROTEIN-ANTIBIOTIC COMPLEX, ADP-RIBOSYLATION, TRANSFERASE, RIFAMPIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BAYSAROWICH,G.D.WRIGHT,M.JUNOP REVDAT 6 14-FEB-24 2HW2 1 REMARK REVDAT 5 20-OCT-21 2HW2 1 REMARK SEQADV LINK REVDAT 4 11-APR-12 2HW2 1 REMARK VERSN REVDAT 3 24-FEB-09 2HW2 1 VERSN REVDAT 2 30-SEP-08 2HW2 1 JRNL REVDAT 1 31-JUL-07 2HW2 0 JRNL AUTH J.BAYSAROWICH,K.KOTEVA,D.W.HUGHES,L.EJIM,E.GRIFFITHS, JRNL AUTH 2 K.ZHANG,M.JUNOP,G.D.WRIGHT JRNL TITL RIFAMYCIN ANTIBIOTIC RESISTANCE BY ADP-RIBOSYLATION: JRNL TITL 2 STRUCTURE AND DIVERSITY OF ARR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 4886 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18349144 JRNL DOI 10.1073/PNAS.0711939105 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 25293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1342 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1430 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1215 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1663 ; 2.186 ; 2.024 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 148 ; 5.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;31.266 ;23.214 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 191 ;15.207 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.693 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 175 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 962 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 597 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 837 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 196 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.323 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 727 ; 2.478 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1145 ; 3.325 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 610 ; 4.492 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 514 ; 6.196 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 143 REMARK 3 RESIDUE RANGE : A 1200 A 1200 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4840 1.8680 -10.3100 REMARK 3 T TENSOR REMARK 3 T11: -0.0632 T22: -0.0540 REMARK 3 T33: -0.0613 T12: 0.0022 REMARK 3 T13: -0.0074 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.9202 L22: 1.5162 REMARK 3 L33: 1.0968 L12: 0.6414 REMARK 3 L13: -0.0037 L23: -0.3491 REMARK 3 S TENSOR REMARK 3 S11: -0.0858 S12: 0.0232 S13: -0.0014 REMARK 3 S21: -0.0551 S22: 0.0176 S23: -0.1142 REMARK 3 S31: -0.0568 S32: 0.1070 S33: 0.0682 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): -19.9080 2.9590 -13.8540 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.0590 REMARK 3 T33: 0.0626 T12: 0.0137 REMARK 3 T13: -0.0161 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 21.0775 L22: 14.0677 REMARK 3 L33: 5.1041 L12: 6.7980 REMARK 3 L13: -7.7013 L23: 2.7312 REMARK 3 S TENSOR REMARK 3 S11: -0.4366 S12: -0.7064 S13: -0.2625 REMARK 3 S21: -0.4734 S22: 0.3650 S23: 0.2567 REMARK 3 S31: -0.0167 S32: 0.4670 S33: 0.0716 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1201 A 1454 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0400 2.4370 -10.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.0532 T22: 0.0631 REMARK 3 T33: 0.0532 T12: 0.0059 REMARK 3 T13: -0.0050 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.5093 L22: 0.5817 REMARK 3 L33: 0.7514 L12: 0.4492 REMARK 3 L13: -0.2786 L23: -0.1827 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.0001 S13: -0.0202 REMARK 3 S21: -0.0457 S22: 0.0275 S23: -0.0369 REMARK 3 S31: -0.0151 S32: 0.0586 S33: 0.0188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26649 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 5% PEG 8000, 0.005M MAGESIUM REMARK 280 CHLORIDE, 0.001M RIFAMPIN, 0.03M GLYCYLGLYCINE, 0.05M TRIS, PH REMARK 280 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.83150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.52050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.83150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.52050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1275 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 90 -94.88 -111.26 REMARK 500 ASP A 114 71.60 -102.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RFP A 1200 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DIFFERENCE IN SEQUENCE IS DUE TO A DIFFERENT STRAIN OF REMARK 999 MYCOBACTERIUM SMEGMATIS MC2-155 USED FOR CRYSTALLIZATION REMARK 999 (ALEXANDER, D., JONES, J., AND LIU, J. (2003) ANTIMICROBIAL REMARK 999 AGENTS AND CHEMOTHERAPY, 47, 3208-3213) DBREF 2HW2 A 1 143 UNP O67972 O67972_MYCSM 1 143 SEQADV 2HW2 GLU A 24 UNP O67972 ASP 24 SEE REMARK 999 SEQADV 2HW2 ASN A 46 UNP O67972 LYS 46 SEE REMARK 999 SEQADV 2HW2 ILE A 48 UNP O67972 VAL 48 SEE REMARK 999 SEQADV 2HW2 ALA A 65 UNP O67972 VAL 65 SEE REMARK 999 SEQADV 2HW2 PHE A 73 UNP O67972 TYR 73 ENGINEERED MUTATION SEQADV 2HW2 ALA A 80 UNP O67972 GLU 80 SEE REMARK 999 SEQADV 2HW2 TRP A 107 UNP O67972 ARG 107 SEE REMARK 999 SEQADV 2HW2 VAL A 116 UNP O67972 GLU 116 SEE REMARK 999 SEQADV 2HW2 PRO A 119 UNP O67972 SER 119 SEE REMARK 999 SEQADV 2HW2 LEU A 123 UNP O67972 ILE 123 SEE REMARK 999 SEQADV 2HW2 GLN A 128 UNP O67972 GLU 128 SEE REMARK 999 SEQADV 2HW2 GLU A 132 UNP O67972 ASP 132 SEE REMARK 999 SEQRES 1 A 143 MET VAL ALA ASN PRO PRO LYS PRO PHE GLU VAL HIS GLU SEQRES 2 A 143 SER GLY ALA TYR LEU HIS GLY THR LYS ALA GLU LEU LYS SEQRES 3 A 143 VAL GLY ASP ARG LEU VAL PRO GLY ARG GLU SER ASN PHE SEQRES 4 A 143 GLU ALA GLY ARG ILE MET ASN HIS ILE TYR ILE THR GLN SEQRES 5 A 143 THR LEU ASP ALA ALA VAL TRP GLY ALA GLU LEU ALA ALA SEQRES 6 A 143 GLY GLU GLY ARG GLY ARG ILE PHE ILE VAL GLU PRO GLU SEQRES 7 A 143 GLY ALA ILE GLU ASP ASP PRO ASN VAL THR ASP LYS LYS SEQRES 8 A 143 LEU PRO GLY ASN PRO THR ARG SER TYR ARG THR ARG GLU SEQRES 9 A 143 PRO VAL TRP ILE VAL GLY GLU LEU THR ASP TRP VAL GLY SEQRES 10 A 143 HIS PRO PRO GLU GLN LEU ALA ALA MET ARG GLN GLY LEU SEQRES 11 A 143 GLU GLU LEU ARG ARG LYS GLY LEU ALA VAL ILE TYR ASP HET GLY A 144 4 HET GLY A 145 5 HET RFP A1200 59 HETNAM GLY GLYCINE HETNAM RFP RIFAMPICIN FORMUL 2 GLY 2(C2 H5 N O2) FORMUL 4 RFP C43 H58 N4 O12 FORMUL 5 HOH *254(H2 O) HELIX 1 1 THR A 53 ALA A 64 1 12 HELIX 2 2 PRO A 85 THR A 88 5 4 HELIX 3 3 PRO A 119 LYS A 136 1 18 SHEET 1 A 4 TYR A 17 THR A 21 0 SHEET 2 A 4 ARG A 71 PRO A 77 -1 O PHE A 73 N HIS A 19 SHEET 3 A 4 VAL A 106 LEU A 112 -1 O LEU A 112 N ILE A 72 SHEET 4 A 4 ARG A 30 LEU A 31 -1 N LEU A 31 O VAL A 106 SHEET 1 B 3 ILE A 48 THR A 51 0 SHEET 2 B 3 SER A 99 THR A 102 -1 O TYR A 100 N ILE A 50 SHEET 3 B 3 GLU A 82 ASP A 83 -1 N GLU A 82 O ARG A 101 LINK C GLY A 144 N GLY A 145 1555 1555 1.32 SITE 1 AC1 5 TYR A 49 ASP A 84 GLY A 145 RFP A1200 SITE 2 AC1 5 HOH A1346 SITE 1 AC2 7 SER A 37 ASN A 38 GLY A 144 HOH A1210 SITE 2 AC2 7 HOH A1213 HOH A1214 HOH A1341 SITE 1 AC3 20 PHE A 39 ALA A 56 TRP A 59 GLY A 60 SITE 2 AC3 20 ASN A 86 VAL A 87 LYS A 90 LYS A 91 SITE 3 AC3 20 MET A 126 GLY A 129 LEU A 130 LEU A 133 SITE 4 AC3 20 VAL A 140 GLY A 144 HOH A1226 HOH A1230 SITE 5 AC3 20 HOH A1271 HOH A1299 HOH A1371 HOH A1400 CRYST1 55.663 61.041 45.567 90.00 91.81 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017965 0.000000 0.000568 0.00000 SCALE2 0.000000 0.016382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021957 0.00000