HEADER TRANSFERASE 01-AUG-06 2HWN TITLE CRYSTAL STRUCTURE OF RII ALPHA DIMERIZATION/DOCKING DOMAIN OF PKA TITLE 2 BOUND TO THE D-AKAP2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY COMPND 3 SUBUNIT; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: DIMERIZATION/DOCKING DOMAIN, RESIDUES 0-44; COMPND 6 EC: 2.7.11.11; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: A KINASE BINDING PEPTIDE; COMPND 10 CHAIN: E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PRKAR2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PKA, AKAP, DIMERIZATION/DOCKING, D/D, REGULATORY SUBUNIT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.KINDERMAN,C.KIM REVDAT 4 14-FEB-24 2HWN 1 REMARK REVDAT 3 13-JUL-11 2HWN 1 VERSN REVDAT 2 24-FEB-09 2HWN 1 VERSN REVDAT 1 21-NOV-06 2HWN 0 JRNL AUTH F.S.KINDERMAN,C.KIM,S.VON DAAKE,Y.MA,B.Q.PHAM,G.SPRAGGON, JRNL AUTH 2 N.H.XUONG,P.A.JENNINGS,S.S.TAYLOR JRNL TITL A DYNAMIC MECHANISM FOR AKAP BINDING TO RII ISOFORMS OF JRNL TITL 2 CAMP-DEPENDENT PROTEIN KINASE. JRNL REF MOL.CELL V. 24 397 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 17081990 JRNL DOI 10.1016/J.MOLCEL.2006.09.015 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 29191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2461 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1631 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.014 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1673 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2279 ; 1.320 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 200 ; 4.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;36.747 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;15.121 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.137 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1270 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 852 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1181 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.259 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1068 ; 0.897 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1680 ; 1.366 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 684 ; 2.037 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 599 ; 3.025 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8420 -23.6880 3.7640 REMARK 3 T TENSOR REMARK 3 T11: -0.3354 T22: -0.2551 REMARK 3 T33: -0.2750 T12: -0.0030 REMARK 3 T13: -0.0037 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 2.9634 L22: 2.1701 REMARK 3 L33: 2.1871 L12: 1.5826 REMARK 3 L13: 0.4146 L23: -0.9236 REMARK 3 S TENSOR REMARK 3 S11: 0.1168 S12: -0.1278 S13: 0.0928 REMARK 3 S21: 0.1984 S22: -0.0692 S23: 0.2428 REMARK 3 S31: -0.0026 S32: -0.1905 S33: -0.0477 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7810 -31.0050 0.2430 REMARK 3 T TENSOR REMARK 3 T11: -0.2749 T22: -0.2189 REMARK 3 T33: -0.1853 T12: -0.0247 REMARK 3 T13: -0.0190 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 5.9597 L22: 1.5114 REMARK 3 L33: 0.8676 L12: 2.7481 REMARK 3 L13: -1.8923 L23: -1.1278 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: 0.2158 S13: -0.2594 REMARK 3 S21: -0.1054 S22: 0.0270 S23: 0.0299 REMARK 3 S31: 0.1117 S32: -0.0295 S33: 0.0523 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 43 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9590 -19.2260 24.1900 REMARK 3 T TENSOR REMARK 3 T11: -0.2282 T22: -0.2109 REMARK 3 T33: -0.3122 T12: -0.0285 REMARK 3 T13: 0.0093 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.3767 L22: 3.2054 REMARK 3 L33: 3.2583 L12: 0.4180 REMARK 3 L13: -0.0394 L23: 1.9213 REMARK 3 S TENSOR REMARK 3 S11: 0.0884 S12: -0.2149 S13: 0.1249 REMARK 3 S21: 0.3446 S22: -0.1600 S23: 0.3230 REMARK 3 S31: 0.0624 S32: -0.2638 S33: 0.0716 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 43 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1200 -12.1620 24.6310 REMARK 3 T TENSOR REMARK 3 T11: -0.2208 T22: -0.2544 REMARK 3 T33: -0.3118 T12: -0.0218 REMARK 3 T13: -0.0035 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.4849 L22: 2.9091 REMARK 3 L33: 5.2434 L12: -0.1453 REMARK 3 L13: -0.0298 L23: 3.2871 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.0222 S13: 0.0388 REMARK 3 S21: 0.1184 S22: -0.0264 S23: 0.0804 REMARK 3 S31: -0.2030 S32: 0.0223 S33: 0.0203 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 20 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9710 -20.4460 -9.4140 REMARK 3 T TENSOR REMARK 3 T11: -0.3180 T22: -0.1303 REMARK 3 T33: -0.2505 T12: 0.0185 REMARK 3 T13: -0.0357 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 11.2844 L22: 11.4368 REMARK 3 L33: 8.5128 L12: 6.7255 REMARK 3 L13: 2.2497 L23: 3.5653 REMARK 3 S TENSOR REMARK 3 S11: -0.2194 S12: 0.6949 S13: 0.1521 REMARK 3 S21: -0.4347 S22: 0.2406 S23: 0.4257 REMARK 3 S31: 0.0216 S32: -0.3409 S33: -0.0212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.04500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 36.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : 0.39600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 20% PEG 8000, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.77550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.28050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.77550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.28050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS ONE OF THE TWO DIMERS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 ILE A 3 REMARK 465 GLN A 4 REMARK 465 ARG A 44 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 HIS C 2 REMARK 465 ILE C 3 REMARK 465 ARG C 44 REMARK 465 MET D 0 REMARK 465 ARG D 44 REMARK 465 GLN E 1 REMARK 465 LYS E 21 REMARK 465 LYS E 22 REMARK 465 GLN F 1 REMARK 465 LYS F 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 MET B 0 CG SD CE REMARK 470 SER B 1 OG REMARK 470 ARG B 44 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 4 CG CD OE1 NE2 REMARK 470 ARG D 22 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 2 O CG CD OE1 OE2 REMARK 470 LYS E 7 CG CD CE NZ REMARK 470 GLN E 18 CG CD OE1 NE2 REMARK 470 GLU F 2 O CG CD OE1 OE2 REMARK 470 LYS F 7 CG CD CE NZ REMARK 470 GLN F 18 CG CD OE1 NE2 REMARK 470 GLN F 19 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET B 0 CB REMARK 480 GLN D 14 OE1 NE2 REMARK 480 ASP F 15 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 0 CA MET B 0 CB 0.178 REMARK 500 ILE D 3 C GLN D 4 N 0.157 REMARK 500 GLN D 14 CD GLN D 14 OE1 0.249 REMARK 500 GLN D 14 CD GLN D 14 NE2 0.193 REMARK 500 GLU E 3 C LEU E 4 N 0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN D 14 OE1 - CD - NE2 ANGL. DEV. = -16.6 DEGREES REMARK 500 GLN D 14 CG - CD - NE2 ANGL. DEV. = 19.6 DEGREES REMARK 500 GLU E 3 N - CA - CB ANGL. DEV. = 17.6 DEGREES REMARK 500 GLU E 3 CA - CB - CG ANGL. DEV. = 23.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 1 30.20 84.33 REMARK 500 GLU E 3 -101.51 43.05 REMARK 500 GLU F 3 -80.55 -4.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R2A RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS FOR PROTEIN KINASE A ANCHORING REVEALED BY REMARK 900 SOLUTION NMR DBREF 2HWN A 0 44 UNP P12368 KAP2_RAT 0 44 DBREF 2HWN B 0 44 UNP P12368 KAP2_RAT 0 44 DBREF 2HWN C 0 44 UNP P12368 KAP2_RAT 0 44 DBREF 2HWN D 0 44 UNP P12368 KAP2_RAT 0 44 DBREF 2HWN E 1 22 PDB 2HWN 2HWN 1 22 DBREF 2HWN F 1 22 PDB 2HWN 2HWN 1 22 SEQRES 1 A 45 MET SER HIS ILE GLN ILE PRO PRO GLY LEU THR GLU LEU SEQRES 2 A 45 LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN PRO SEQRES 3 A 45 PRO ASP LEU VAL ASP PHE ALA VAL GLU TYR PHE THR ARG SEQRES 4 A 45 LEU ARG GLU ALA ARG ARG SEQRES 1 B 45 MET SER HIS ILE GLN ILE PRO PRO GLY LEU THR GLU LEU SEQRES 2 B 45 LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN PRO SEQRES 3 B 45 PRO ASP LEU VAL ASP PHE ALA VAL GLU TYR PHE THR ARG SEQRES 4 B 45 LEU ARG GLU ALA ARG ARG SEQRES 1 C 45 MET SER HIS ILE GLN ILE PRO PRO GLY LEU THR GLU LEU SEQRES 2 C 45 LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN PRO SEQRES 3 C 45 PRO ASP LEU VAL ASP PHE ALA VAL GLU TYR PHE THR ARG SEQRES 4 C 45 LEU ARG GLU ALA ARG ARG SEQRES 1 D 45 MET SER HIS ILE GLN ILE PRO PRO GLY LEU THR GLU LEU SEQRES 2 D 45 LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN PRO SEQRES 3 D 45 PRO ASP LEU VAL ASP PHE ALA VAL GLU TYR PHE THR ARG SEQRES 4 D 45 LEU ARG GLU ALA ARG ARG SEQRES 1 E 22 GLN GLU GLU LEU ALA TRP LYS ILE ALA LYS MET ILE VAL SEQRES 2 E 22 SER ASP VAL MET GLN GLN CYS LYS LYS SEQRES 1 F 22 GLN GLU GLU LEU ALA TRP LYS ILE ALA LYS MET ILE VAL SEQRES 2 F 22 SER ASP VAL MET GLN GLN CYS LYS LYS HET GOL B 302 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *211(H2 O) HELIX 1 1 GLY A 8 GLN A 24 1 17 HELIX 2 2 ASP A 27 ALA A 42 1 16 HELIX 3 3 GLY B 8 GLN B 24 1 17 HELIX 4 4 ASP B 27 ARG B 43 1 17 HELIX 5 5 GLY C 8 GLN C 24 1 17 HELIX 6 6 ASP C 27 ARG C 43 1 17 HELIX 7 7 GLY D 8 LEU D 21 1 14 HELIX 8 8 ASP D 27 ARG D 43 1 17 HELIX 9 9 ILE E 8 MET E 17 1 10 HELIX 10 10 ILE F 8 MET F 17 1 10 SITE 1 AC1 10 THR A 10 GLU A 11 GLN A 14 GLN B 23 SITE 2 AC1 10 PHE B 31 ARG B 38 HOH B 337 HOH B 346 SITE 3 AC1 10 LYS E 10 HOH E 26 CRYST1 99.551 44.561 72.802 90.00 124.07 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010045 0.000000 0.006793 0.00000 SCALE2 0.000000 0.022441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016582 0.00000