HEADER REPLICATION, HYDROLASE 02-AUG-06 2HWT TITLE NMR SOLUTION STRUCTURE OF THE MASTER-REP PROTEIN NUCLEASE DOMAIN (2- TITLE 2 95) FROM THE FABA BEAN NECROTIC YELLOWS VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REPLICASE-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEASE DOMAIN (RESIDUES 2-95); COMPND 5 EC: 3.1.21.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FABA BEAN NECROTIC YELLOWS VIRUS; SOURCE 3 ORGANISM_TAXID: 59817; SOURCE 4 GENE: C2 COMPONENT 2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ALPHA, BETA, REPLICATION, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 31 MDLTYP MINIMIZED AVERAGE AUTHOR S.VEGA-ROCHA,B.GRONENBORN,A.M.GRONENBORN,R.CAMPOS-OLIVAS REVDAT 4 14-JUN-23 2HWT 1 REMARK REVDAT 3 19-FEB-20 2HWT 1 REMARK REVDAT 2 24-FEB-09 2HWT 1 VERSN REVDAT 1 26-JUN-07 2HWT 0 JRNL AUTH S.VEGA-ROCHA,B.GRONENBORN,A.M.GRONENBORN,R.CAMPOS-OLIVAS JRNL TITL SOLUTION STRUCTURE OF THE ENDONUCLEASE DOMAIN FROM THE JRNL TITL 2 MASTER REPLICATION INITIATOR PROTEIN OF THE NANOVIRUS FABA JRNL TITL 3 BEAN NECROTIC YELLOWS VIRUS AND COMPARISON WITH THE JRNL TITL 4 CORRESPONDING GEMINIVIRUS AND CIRCOVIRUS STRUCTURES JRNL REF BIOCHEMISTRY V. 46 6201 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17472345 JRNL DOI 10.1021/BI700159Q REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT P. (CYANA), GUNTERT P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HWT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038851. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 1.264 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM M-REP_2-95_FBNYV U-10 % REMARK 210 13C; U-15N, 20 MM SODIUM REMARK 210 PHOSPHATE, 600 MM NACL, 1 MM DTT, REMARK 210 8 % D2O; 0.6 MM M-REP_2-95_ REMARK 210 FBNYV U-10 % 13C; U-15N, 20 MM REMARK 210 SODIUM PHOSPHATE, 600 MM NACL, 1 REMARK 210 MM DTT, 100 % D2O; 0.6 MM M-REP_ REMARK 210 2-95_FBNYV U-13C; U-15N, 20 MM REMARK 210 SODIUM PHOSPHATE, 600 MM NACL, 1 REMARK 210 MM DTT, 8 % D2O; 0.6 MM M-REP_2- REMARK 210 95_FBNYV U-13C; U-15N, 20 MM REMARK 210 SODIUM PHOSPHATE, 600 MM NACL, 1 REMARK 210 MM DTT, 100 % D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; REMARK 210 HNHB; 2D HNCOCG AROMATIC; 2D REMARK 210 HNCG AROMATIC; 4D_13C/15N- REMARK 210 SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; 1H/15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 97.027.12.56, NMRVIEW 5.0.20, REMARK 210 TALOS 2003.027.13.05 REMARK 210 METHOD USED : 30 CONFORMERS CALCULATED USING REMARK 210 SIMULATED ANNEALING IN TORSION REMARK 210 ANGLE SPACE WITH CYANA 2.1 REMARK 210 (MODELS 2-31) AND AVERAGE REMARK 210 STRUCTURE AFTER CYANA VARIABLE REMARK 210 TARGET FUNCTION MINIMISATION REMARK 210 (MODEL 1) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 31 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 36 84.51 37.82 REMARK 500 1 ALA A 37 172.26 64.60 REMARK 500 1 ASN A 39 172.51 -53.57 REMARK 500 1 LYS A 50 -74.46 179.25 REMARK 500 1 ARG A 51 48.61 -89.35 REMARK 500 1 THR A 72 30.45 -155.32 REMARK 500 1 GLN A 73 100.33 -56.09 REMARK 500 1 SER A 80 -88.43 61.69 REMARK 500 2 GLU A 36 84.76 37.85 REMARK 500 2 ALA A 37 172.77 64.83 REMARK 500 2 ASN A 39 172.85 -53.77 REMARK 500 2 LYS A 50 -74.29 -179.92 REMARK 500 2 ARG A 51 46.74 -90.08 REMARK 500 2 SER A 80 153.95 -45.67 REMARK 500 2 MET A 81 168.43 64.65 REMARK 500 2 LEU A 87 -60.32 -105.93 REMARK 500 3 SER A 17 160.52 179.94 REMARK 500 3 GLU A 36 -158.16 42.86 REMARK 500 3 ALA A 37 -169.48 -58.23 REMARK 500 3 LYS A 50 -73.90 -180.00 REMARK 500 3 ARG A 51 48.00 -89.51 REMARK 500 3 THR A 72 30.52 -155.03 REMARK 500 3 GLN A 73 101.46 -54.76 REMARK 500 3 SER A 80 -87.13 62.21 REMARK 500 4 ARG A 3 165.05 62.40 REMARK 500 4 GLU A 36 84.26 37.77 REMARK 500 4 ALA A 37 173.90 64.29 REMARK 500 4 ASN A 39 170.25 -52.34 REMARK 500 4 LYS A 50 -73.91 178.70 REMARK 500 4 ARG A 51 45.77 -90.80 REMARK 500 4 ARG A 70 76.02 67.93 REMARK 500 4 THR A 72 20.54 -155.76 REMARK 500 4 SER A 80 -166.69 63.33 REMARK 500 4 MET A 81 -169.47 -72.43 REMARK 500 5 LYS A 50 -74.56 179.81 REMARK 500 5 ARG A 51 49.41 -89.01 REMARK 500 5 THR A 72 30.68 -161.29 REMARK 500 5 GLN A 73 100.49 -55.89 REMARK 500 5 SER A 80 -89.61 61.24 REMARK 500 6 LYS A 50 -72.99 -179.77 REMARK 500 6 ARG A 51 49.41 -88.22 REMARK 500 6 THR A 72 36.16 -155.10 REMARK 500 6 GLN A 73 100.60 -55.00 REMARK 500 6 SER A 80 -93.24 49.18 REMARK 500 6 LEU A 87 -60.86 -105.98 REMARK 500 7 GLU A 36 -158.74 43.03 REMARK 500 7 ALA A 37 -168.77 -58.61 REMARK 500 7 LYS A 50 -72.73 179.07 REMARK 500 7 ARG A 51 47.44 -89.52 REMARK 500 7 ILE A 61 78.38 -112.70 REMARK 500 REMARK 500 THIS ENTRY HAS 257 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7112 RELATED DB: BMRB REMARK 900 RESONANCE ASSIGNMENT DBREF 2HWT A 2 95 UNP O39828 O39828_9VIRU 2 95 SEQRES 1 A 94 ALA ARG GLN VAL ILE CYS TRP CYS PHE THR LEU ASN ASN SEQRES 2 A 94 PRO LEU SER PRO LEU SER LEU HIS ASP SER MET LYS TYR SEQRES 3 A 94 LEU VAL TYR GLN THR GLU GLN GLY GLU ALA GLY ASN ILE SEQRES 4 A 94 HIS PHE GLN GLY TYR ILE GLU MET LYS LYS ARG THR SER SEQRES 5 A 94 LEU ALA GLY MET LYS LYS LEU ILE PRO GLY ALA HIS PHE SEQRES 6 A 94 GLU LYS ARG ARG GLY THR GLN GLY GLU ALA ARG ALA TYR SEQRES 7 A 94 SER MET LYS GLU ASP THR ARG LEU GLU GLY PRO TRP GLU SEQRES 8 A 94 TYR GLY GLU HELIX 1 1 SER A 53 ILE A 61 1 9 HELIX 2 2 GLY A 74 ALA A 78 5 5 HELIX 3 3 LYS A 82 ARG A 86 5 5 SHEET 1 A 5 HIS A 65 GLU A 67 0 SHEET 2 A 5 TRP A 8 ASN A 13 -1 N THR A 11 O HIS A 65 SHEET 3 A 5 ILE A 40 GLU A 47 -1 O PHE A 42 N LEU A 12 SHEET 4 A 5 TYR A 27 GLN A 34 -1 N GLN A 31 O GLN A 43 SHEET 5 A 5 TRP A 91 GLY A 94 -1 O TYR A 93 N LEU A 28 CISPEP 1 GLY A 89 PRO A 90 1 0.01 CISPEP 2 GLY A 89 PRO A 90 2 0.05 CISPEP 3 GLY A 89 PRO A 90 3 0.03 CISPEP 4 GLY A 89 PRO A 90 4 -0.02 CISPEP 5 GLY A 89 PRO A 90 5 0.00 CISPEP 6 GLY A 89 PRO A 90 6 -0.01 CISPEP 7 GLY A 89 PRO A 90 7 0.04 CISPEP 8 GLY A 89 PRO A 90 8 0.06 CISPEP 9 GLY A 89 PRO A 90 9 0.08 CISPEP 10 GLY A 89 PRO A 90 10 -0.02 CISPEP 11 GLY A 89 PRO A 90 11 0.02 CISPEP 12 GLY A 89 PRO A 90 12 -0.05 CISPEP 13 GLY A 89 PRO A 90 13 0.03 CISPEP 14 GLY A 89 PRO A 90 14 0.05 CISPEP 15 GLY A 89 PRO A 90 15 -0.06 CISPEP 16 GLY A 89 PRO A 90 16 -0.01 CISPEP 17 GLY A 89 PRO A 90 17 0.02 CISPEP 18 GLY A 89 PRO A 90 18 0.05 CISPEP 19 GLY A 89 PRO A 90 19 0.04 CISPEP 20 GLY A 89 PRO A 90 20 0.03 CISPEP 21 GLY A 89 PRO A 90 21 0.03 CISPEP 22 GLY A 89 PRO A 90 22 0.06 CISPEP 23 GLY A 89 PRO A 90 23 -0.02 CISPEP 24 GLY A 89 PRO A 90 24 -0.02 CISPEP 25 GLY A 89 PRO A 90 25 0.03 CISPEP 26 GLY A 89 PRO A 90 26 0.05 CISPEP 27 GLY A 89 PRO A 90 27 0.06 CISPEP 28 GLY A 89 PRO A 90 28 0.05 CISPEP 29 GLY A 89 PRO A 90 29 0.07 CISPEP 30 GLY A 89 PRO A 90 30 0.07 CISPEP 31 GLY A 89 PRO A 90 31 0.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1