data_2HXD # _entry.id 2HXD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HXD pdb_00002hxd 10.2210/pdb2hxd/pdb RCSB RCSB038871 ? ? WWPDB D_1000038871 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HXB 'Same protein and space group, wildtype with nothing bound.' unspecified PDB 2HXE 'Mutant enzyme variant E145Q DCD-DUT in complex with pyrophosphate and magnesium.' unspecified # _pdbx_database_status.entry_id 2HXD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2006-08-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bynck, J.H.' 1 'Johansson, E.' 2 # _citation.id primary _citation.title 'Structural evidence for a concerted Bifunctionality in dCTP deaminase-dUTPase from Methanocaldococcus jannaschii' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bynck, J.H.' 1 ? primary 'Willemoes, M.' 2 ? primary 'Larsen, S.' 3 ? primary 'Johansson, E.' 4 ? # _cell.length_a 171.513 _cell.length_b 171.513 _cell.length_c 171.513 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2HXD _cell.pdbx_unique_axis ? _cell.Z_PDB 48 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 4 3 2' _symmetry.entry_id 2HXD _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 211 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'dCTP deaminase, dUMP-forming' 23403.818 1 3.5.4.30 E145A ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; 467.157 1 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Bifunctional deaminase/diphosphatase, MjDCD-DUT, DCD/DUT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLAIVAFDKPVILYKNQR IGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHKKD ; _entity_poly.pdbx_seq_one_letter_code_can ;MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLAIVAFDKPVILYKNQR IGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHKKD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 LEU n 1 4 SER n 1 5 ASP n 1 6 LYS n 1 7 ASP n 1 8 ILE n 1 9 ILE n 1 10 ASP n 1 11 TYR n 1 12 VAL n 1 13 THR n 1 14 SER n 1 15 LYS n 1 16 ARG n 1 17 ILE n 1 18 ILE n 1 19 ILE n 1 20 LYS n 1 21 PRO n 1 22 PHE n 1 23 ASN n 1 24 LYS n 1 25 ASP n 1 26 PHE n 1 27 VAL n 1 28 GLY n 1 29 PRO n 1 30 CYS n 1 31 SER n 1 32 TYR n 1 33 ASP n 1 34 VAL n 1 35 THR n 1 36 LEU n 1 37 GLY n 1 38 ASP n 1 39 GLU n 1 40 PHE n 1 41 ILE n 1 42 ILE n 1 43 TYR n 1 44 ASP n 1 45 ASP n 1 46 GLU n 1 47 VAL n 1 48 TYR n 1 49 ASP n 1 50 LEU n 1 51 SER n 1 52 LYS n 1 53 GLU n 1 54 LEU n 1 55 ASN n 1 56 TYR n 1 57 LYS n 1 58 ARG n 1 59 ILE n 1 60 LYS n 1 61 ILE n 1 62 LYS n 1 63 ASN n 1 64 SER n 1 65 ILE n 1 66 LEU n 1 67 VAL n 1 68 CYS n 1 69 PRO n 1 70 LEU n 1 71 ASN n 1 72 TYR n 1 73 ASN n 1 74 LEU n 1 75 THR n 1 76 GLU n 1 77 GLU n 1 78 LYS n 1 79 ILE n 1 80 ASN n 1 81 TYR n 1 82 PHE n 1 83 LYS n 1 84 GLU n 1 85 LYS n 1 86 TYR n 1 87 ASN n 1 88 VAL n 1 89 ASP n 1 90 TYR n 1 91 VAL n 1 92 VAL n 1 93 GLU n 1 94 GLY n 1 95 GLY n 1 96 VAL n 1 97 LEU n 1 98 GLY n 1 99 THR n 1 100 THR n 1 101 ASN n 1 102 GLU n 1 103 TYR n 1 104 ILE n 1 105 GLU n 1 106 LEU n 1 107 PRO n 1 108 ASN n 1 109 ASP n 1 110 ILE n 1 111 SER n 1 112 ALA n 1 113 GLN n 1 114 TYR n 1 115 GLN n 1 116 GLY n 1 117 ARG n 1 118 SER n 1 119 SER n 1 120 LEU n 1 121 GLY n 1 122 ARG n 1 123 VAL n 1 124 PHE n 1 125 LEU n 1 126 THR n 1 127 SER n 1 128 HIS n 1 129 GLN n 1 130 THR n 1 131 ALA n 1 132 GLY n 1 133 TRP n 1 134 ILE n 1 135 ASP n 1 136 ALA n 1 137 GLY n 1 138 PHE n 1 139 LYS n 1 140 GLY n 1 141 LYS n 1 142 ILE n 1 143 THR n 1 144 LEU n 1 145 ALA n 1 146 ILE n 1 147 VAL n 1 148 ALA n 1 149 PHE n 1 150 ASP n 1 151 LYS n 1 152 PRO n 1 153 VAL n 1 154 ILE n 1 155 LEU n 1 156 TYR n 1 157 LYS n 1 158 ASN n 1 159 GLN n 1 160 ARG n 1 161 ILE n 1 162 GLY n 1 163 GLN n 1 164 LEU n 1 165 ILE n 1 166 PHE n 1 167 SER n 1 168 LYS n 1 169 LEU n 1 170 LEU n 1 171 SER n 1 172 PRO n 1 173 ALA n 1 174 ASP n 1 175 VAL n 1 176 GLY n 1 177 TYR n 1 178 SER n 1 179 GLU n 1 180 ARG n 1 181 LYS n 1 182 THR n 1 183 SER n 1 184 LYS n 1 185 TYR n 1 186 ALA n 1 187 TYR n 1 188 GLN n 1 189 LYS n 1 190 SER n 1 191 VAL n 1 192 MET n 1 193 PRO n 1 194 SER n 1 195 LEU n 1 196 ILE n 1 197 HIS n 1 198 LEU n 1 199 ASP n 1 200 ASN n 1 201 HIS n 1 202 LYS n 1 203 LYS n 1 204 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Methanocaldococcus _entity_src_gen.pdbx_gene_src_gene dcd _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCD_METJA _struct_ref.pdbx_db_accession Q57872 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLEIVAFDKPVILYKNQR IGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHKKD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HXD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 204 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q57872 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 204 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 204 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2HXD _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 145 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q57872 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 145 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 145 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DUP non-polymer . ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; ? 'C9 H16 N3 O13 P3' 467.157 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2HXD _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.44 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9.2 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '20 % PEG3350, 0.2M di-potassium hydrogen phosphate, pH 9.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-07-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator Mirror _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.072300 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.072300 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 # _reflns.entry_id 2HXD _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 25 _reflns.number_all 18566 _reflns.number_obs 18566 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.36 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs 0.432 _reflns_shell.meanI_over_sigI_obs 3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.number_unique_all 2746 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2HXD _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 24.750 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 17636 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.18 _refine.ls_R_factor_R_work 0.178 _refine.ls_R_factor_R_free 0.221 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 924 _refine.B_iso_mean 27.131 _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.pdbx_overall_ESU_R 0.169 _refine.pdbx_overall_ESU_R_Free 0.163 _refine.overall_SU_ML 0.114 _refine.overall_SU_B 4.773 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 18560 _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 'PDB ENTRY 2HXB' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1606 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1756 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 24.750 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1668 0.022 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1504 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2261 1.844 1.997 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3520 0.942 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 198 7.496 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 73 34.888 24.795 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 301 17.328 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 20.960 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 252 0.101 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1794 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 326 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 287 0.195 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1464 0.182 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 782 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 996 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 95 0.187 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 32 0.248 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 116 0.302 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 30 0.173 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1271 1.376 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 405 0.197 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1611 1.591 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 822 2.643 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 650 3.739 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.359 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1308 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.264 _refine_ls_shell.R_factor_R_free 0.353 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1386 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HXD _struct.title ;Bifunctional dCTP deaminase-dUTPase mutant enzyme variant E145A from Methanocaldococcus jannaschii in complex with alpha,beta-imido dUTP and magnesium ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HXD _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'beta barrel, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? SER A 14 ? SER A 4 SER A 14 1 ? 11 HELX_P HELX_P2 2 ASN A 23 ? VAL A 27 ? ASN A 23 VAL A 27 5 ? 5 HELX_P HELX_P3 3 THR A 75 ? ASN A 87 ? THR A 75 ASN A 87 1 ? 13 HELX_P HELX_P4 4 ARG A 117 ? ARG A 122 ? ARG A 117 ARG A 122 1 ? 6 HELX_P HELX_P5 5 GLY A 176 ? ARG A 180 ? GLY A 176 ARG A 180 5 ? 5 HELX_P HELX_P6 6 LEU A 195 ? ASP A 199 ? LEU A 195 ASP A 199 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B MG . MG ? ? ? 1_555 C DUP . O1G ? ? A MG 205 A DUP 206 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 C DUP . O1A ? ? A MG 205 A DUP 206 1_555 ? ? ? ? ? ? ? 2.174 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C DUP . O1B ? ? A MG 205 A DUP 206 1_555 ? ? ? ? ? ? ? 2.379 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 205 A HOH 260 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 205 A HOH 306 1_555 ? ? ? ? ? ? ? 2.224 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 20 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 20 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 21 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 21 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.46 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 18 ? LYS A 20 ? ILE A 18 LYS A 20 A 2 VAL A 96 ? GLU A 105 ? VAL A 96 GLU A 105 A 3 LYS A 139 ? ALA A 148 ? LYS A 139 ALA A 148 A 4 LEU A 125 ? THR A 126 ? LEU A 125 THR A 126 B 1 TYR A 32 ? THR A 35 ? TYR A 32 THR A 35 B 2 ARG A 160 ? LYS A 168 ? ARG A 160 LYS A 168 B 3 ILE A 110 ? GLY A 116 ? ILE A 110 GLY A 116 B 4 TRP A 133 ? ILE A 134 ? TRP A 133 ILE A 134 C 1 GLU A 39 ? TYR A 43 ? GLU A 39 TYR A 43 C 2 TYR A 56 ? LYS A 60 ? TYR A 56 LYS A 60 D 1 TYR A 90 ? GLU A 93 ? TYR A 90 GLU A 93 D 2 SER A 64 ? CYS A 68 ? SER A 64 CYS A 68 D 3 VAL A 153 ? TYR A 156 ? VAL A 153 TYR A 156 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 20 ? N LYS A 20 O TYR A 103 ? O TYR A 103 A 2 3 N ILE A 104 ? N ILE A 104 O GLY A 140 ? O GLY A 140 A 3 4 O VAL A 147 ? O VAL A 147 N THR A 126 ? N THR A 126 B 1 2 N TYR A 32 ? N TYR A 32 O LEU A 164 ? O LEU A 164 B 2 3 O GLN A 163 ? O GLN A 163 N GLN A 115 ? N GLN A 115 B 3 4 N ALA A 112 ? N ALA A 112 O ILE A 134 ? O ILE A 134 C 1 2 N ILE A 42 ? N ILE A 42 O LYS A 57 ? O LYS A 57 D 1 2 O VAL A 92 ? O VAL A 92 N CYS A 68 ? N CYS A 68 D 2 3 N VAL A 67 ? N VAL A 67 O VAL A 153 ? O VAL A 153 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 205 ? 3 'BINDING SITE FOR RESIDUE MG A 205' AC2 Software A DUP 206 ? 24 'BINDING SITE FOR RESIDUE DUP A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DUP C . ? DUP A 206 . ? 1_555 ? 2 AC1 3 HOH D . ? HOH A 260 . ? 1_555 ? 3 AC1 3 HOH D . ? HOH A 306 . ? 1_555 ? 4 AC2 24 ARG A 117 ? ARG A 117 . ? 11_566 ? 5 AC2 24 SER A 118 ? SER A 118 . ? 11_566 ? 6 AC2 24 SER A 119 ? SER A 119 . ? 11_566 ? 7 AC2 24 ARG A 122 ? ARG A 122 . ? 11_566 ? 8 AC2 24 ALA A 131 ? ALA A 131 . ? 1_555 ? 9 AC2 24 GLY A 132 ? GLY A 132 . ? 1_555 ? 10 AC2 24 TRP A 133 ? TRP A 133 . ? 1_555 ? 11 AC2 24 ASP A 135 ? ASP A 135 . ? 1_555 ? 12 AC2 24 PHE A 138 ? PHE A 138 . ? 1_555 ? 13 AC2 24 ILE A 142 ? ILE A 142 . ? 1_555 ? 14 AC2 24 THR A 143 ? THR A 143 . ? 1_555 ? 15 AC2 24 GLN A 163 ? GLN A 163 . ? 11_566 ? 16 AC2 24 TYR A 177 ? TYR A 177 . ? 1_555 ? 17 AC2 24 LYS A 184 ? LYS A 184 . ? 1_555 ? 18 AC2 24 TYR A 185 ? TYR A 185 . ? 1_555 ? 19 AC2 24 GLN A 188 ? GLN A 188 . ? 1_555 ? 20 AC2 24 MG B . ? MG A 205 . ? 1_555 ? 21 AC2 24 HOH D . ? HOH A 218 . ? 1_555 ? 22 AC2 24 HOH D . ? HOH A 219 . ? 1_555 ? 23 AC2 24 HOH D . ? HOH A 239 . ? 1_555 ? 24 AC2 24 HOH D . ? HOH A 265 . ? 1_555 ? 25 AC2 24 HOH D . ? HOH A 274 . ? 1_555 ? 26 AC2 24 HOH D . ? HOH A 292 . ? 1_555 ? 27 AC2 24 HOH D . ? HOH A 306 . ? 1_555 ? # _atom_sites.entry_id 2HXD _atom_sites.fract_transf_matrix[1][1] 0.005830 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005830 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005830 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 PHE 124 124 124 PHE PHE A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 TRP 133 133 133 TRP TRP A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 THR 143 143 143 THR THR A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 TYR 156 156 156 TYR TYR A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 ASN 158 158 158 ASN ASN A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 ARG 160 160 160 ARG ARG A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ILE 165 165 165 ILE ILE A . n A 1 166 PHE 166 166 166 PHE PHE A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 LYS 168 168 168 LYS LYS A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 PRO 172 172 172 PRO PRO A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 SER 178 178 178 SER SER A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 LYS 184 184 184 LYS LYS A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 TYR 187 187 187 TYR TYR A . n A 1 188 GLN 188 188 188 GLN GLN A . n A 1 189 LYS 189 189 189 LYS LYS A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 MET 192 192 192 MET MET A . n A 1 193 PRO 193 193 193 PRO PRO A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 HIS 197 197 197 HIS HIS A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 ASN 200 200 ? ? ? A . n A 1 201 HIS 201 201 ? ? ? A . n A 1 202 LYS 202 202 ? ? ? A . n A 1 203 LYS 203 203 ? ? ? A . n A 1 204 ASP 204 204 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 205 201 MG MG A . C 3 DUP 1 206 200 DUP DUP A . D 4 HOH 1 207 1 HOH HOH A . D 4 HOH 2 208 2 HOH HOH A . D 4 HOH 3 209 3 HOH HOH A . D 4 HOH 4 210 4 HOH HOH A . D 4 HOH 5 211 5 HOH HOH A . D 4 HOH 6 212 6 HOH HOH A . D 4 HOH 7 213 7 HOH HOH A . D 4 HOH 8 214 8 HOH HOH A . D 4 HOH 9 215 9 HOH HOH A . D 4 HOH 10 216 10 HOH HOH A . D 4 HOH 11 217 11 HOH HOH A . D 4 HOH 12 218 12 HOH HOH A . D 4 HOH 13 219 13 HOH HOH A . D 4 HOH 14 220 14 HOH HOH A . D 4 HOH 15 221 15 HOH HOH A . D 4 HOH 16 222 16 HOH HOH A . D 4 HOH 17 223 17 HOH HOH A . D 4 HOH 18 224 18 HOH HOH A . D 4 HOH 19 225 19 HOH HOH A . D 4 HOH 20 226 20 HOH HOH A . D 4 HOH 21 227 21 HOH HOH A . D 4 HOH 22 228 22 HOH HOH A . D 4 HOH 23 229 23 HOH HOH A . D 4 HOH 24 230 24 HOH HOH A . D 4 HOH 25 231 25 HOH HOH A . D 4 HOH 26 232 26 HOH HOH A . D 4 HOH 27 233 27 HOH HOH A . D 4 HOH 28 234 28 HOH HOH A . D 4 HOH 29 235 29 HOH HOH A . D 4 HOH 30 236 30 HOH HOH A . D 4 HOH 31 237 31 HOH HOH A . D 4 HOH 32 238 32 HOH HOH A . D 4 HOH 33 239 33 HOH HOH A . D 4 HOH 34 240 34 HOH HOH A . D 4 HOH 35 241 35 HOH HOH A . D 4 HOH 36 242 36 HOH HOH A . D 4 HOH 37 243 37 HOH HOH A . D 4 HOH 38 244 38 HOH HOH A . D 4 HOH 39 245 39 HOH HOH A . D 4 HOH 40 246 40 HOH HOH A . D 4 HOH 41 247 41 HOH HOH A . D 4 HOH 42 248 42 HOH HOH A . D 4 HOH 43 249 43 HOH HOH A . D 4 HOH 44 250 45 HOH HOH A . D 4 HOH 45 251 46 HOH HOH A . D 4 HOH 46 252 47 HOH HOH A . D 4 HOH 47 253 48 HOH HOH A . D 4 HOH 48 254 49 HOH HOH A . D 4 HOH 49 255 50 HOH HOH A . D 4 HOH 50 256 51 HOH HOH A . D 4 HOH 51 257 52 HOH HOH A . D 4 HOH 52 258 53 HOH HOH A . D 4 HOH 53 259 54 HOH HOH A . D 4 HOH 54 260 55 HOH HOH A . D 4 HOH 55 261 56 HOH HOH A . D 4 HOH 56 262 57 HOH HOH A . D 4 HOH 57 263 58 HOH HOH A . D 4 HOH 58 264 59 HOH HOH A . D 4 HOH 59 265 60 HOH HOH A . D 4 HOH 60 266 61 HOH HOH A . D 4 HOH 61 267 62 HOH HOH A . D 4 HOH 62 268 63 HOH HOH A . D 4 HOH 63 269 64 HOH HOH A . D 4 HOH 64 270 65 HOH HOH A . D 4 HOH 65 271 66 HOH HOH A . D 4 HOH 66 272 67 HOH HOH A . D 4 HOH 67 273 68 HOH HOH A . D 4 HOH 68 274 69 HOH HOH A . D 4 HOH 69 275 70 HOH HOH A . D 4 HOH 70 276 71 HOH HOH A . D 4 HOH 71 277 72 HOH HOH A . D 4 HOH 72 278 73 HOH HOH A . D 4 HOH 73 279 74 HOH HOH A . D 4 HOH 74 280 75 HOH HOH A . D 4 HOH 75 281 76 HOH HOH A . D 4 HOH 76 282 77 HOH HOH A . D 4 HOH 77 283 78 HOH HOH A . D 4 HOH 78 284 79 HOH HOH A . D 4 HOH 79 285 80 HOH HOH A . D 4 HOH 80 286 81 HOH HOH A . D 4 HOH 81 287 82 HOH HOH A . D 4 HOH 82 288 83 HOH HOH A . D 4 HOH 83 289 84 HOH HOH A . D 4 HOH 84 290 85 HOH HOH A . D 4 HOH 85 291 86 HOH HOH A . D 4 HOH 86 292 87 HOH HOH A . D 4 HOH 87 293 88 HOH HOH A . D 4 HOH 88 294 89 HOH HOH A . D 4 HOH 89 295 90 HOH HOH A . D 4 HOH 90 296 91 HOH HOH A . D 4 HOH 91 297 92 HOH HOH A . D 4 HOH 92 298 93 HOH HOH A . D 4 HOH 93 299 94 HOH HOH A . D 4 HOH 94 300 95 HOH HOH A . D 4 HOH 95 301 96 HOH HOH A . D 4 HOH 96 302 97 HOH HOH A . D 4 HOH 97 303 98 HOH HOH A . D 4 HOH 98 304 99 HOH HOH A . D 4 HOH 99 305 102 HOH HOH A . D 4 HOH 100 306 103 HOH HOH A . D 4 HOH 101 307 104 HOH HOH A . D 4 HOH 102 308 105 HOH HOH A . D 4 HOH 103 309 106 HOH HOH A . D 4 HOH 104 310 108 HOH HOH A . D 4 HOH 105 311 109 HOH HOH A . D 4 HOH 106 312 110 HOH HOH A . D 4 HOH 107 313 111 HOH HOH A . D 4 HOH 108 314 114 HOH HOH A . D 4 HOH 109 315 116 HOH HOH A . D 4 HOH 110 316 117 HOH HOH A . D 4 HOH 111 317 119 HOH HOH A . D 4 HOH 112 318 120 HOH HOH A . D 4 HOH 113 319 122 HOH HOH A . D 4 HOH 114 320 123 HOH HOH A . D 4 HOH 115 321 124 HOH HOH A . D 4 HOH 116 322 125 HOH HOH A . D 4 HOH 117 323 127 HOH HOH A . D 4 HOH 118 324 128 HOH HOH A . D 4 HOH 119 325 130 HOH HOH A . D 4 HOH 120 326 131 HOH HOH A . D 4 HOH 121 327 133 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 software_defined_assembly PISA hexameric 6 3 software_defined_assembly PQS 24-meric 24 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,B,C,D 2 1,2,3,4,5,6 A,B,C,D 3 1,7,8,9,10,11,12,2,13,14,3,15,16,17,18,19,20,21,22,23,24,25,26,27 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 14600 ? 1 MORE -89 ? 1 'SSA (A^2)' 21370 ? 2 'ABSA (A^2)' 32370 ? 2 MORE -184 ? 2 'SSA (A^2)' 39580 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 3 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 4 'crystal symmetry operation' 38_556 -y+1/2,-x+1/2,-z+3/2 0.0000000000 -1.0000000000 0.0000000000 85.7565000000 -1.0000000000 0.0000000000 0.0000000000 85.7565000000 0.0000000000 0.0000000000 -1.0000000000 257.2695000000 5 'crystal symmetry operation' 42_545 -x+1/2,z-1/2,y+1/2 -1.0000000000 0.0000000000 0.0000000000 85.7565000000 0.0000000000 0.0000000000 1.0000000000 -85.7565000000 0.0000000000 1.0000000000 0.0000000000 85.7565000000 6 'crystal symmetry operation' 46_455 z-1/2,-y+1/2,x+1/2 0.0000000000 0.0000000000 1.0000000000 -85.7565000000 0.0000000000 -1.0000000000 0.0000000000 85.7565000000 1.0000000000 0.0000000000 0.0000000000 85.7565000000 7 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 171.5130000000 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 9 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 10 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 11 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 12 'crystal symmetry operation' 7_665 -z+1,-x+1,y 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 13 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 14 'crystal symmetry operation' 10_656 -y+1,z,-x+1 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 15 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 16 'crystal symmetry operation' 13_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 17 'crystal symmetry operation' 14_666 -y+1,-x+1,-z+1 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 18 'crystal symmetry operation' 15_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 19 'crystal symmetry operation' 16_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 20 'crystal symmetry operation' 17_556 x,z,-y+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 21 'crystal symmetry operation' 18_655 -x+1,z,y -1.0000000000 0.0000000000 0.0000000000 171.5130000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 22 'crystal symmetry operation' 19_666 -x+1,-z+1,-y+1 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 23 'crystal symmetry operation' 20_565 x,-z+1,y 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 24 'crystal symmetry operation' 21_556 z,y,-x+1 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 25 'crystal symmetry operation' 22_565 z,-y+1,x 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 26 'crystal symmetry operation' 23_655 -z+1,y,x 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 27 'crystal symmetry operation' 24_666 -z+1,-y+1,-x+1 0.0000000000 0.0000000000 -1.0000000000 171.5130000000 0.0000000000 -1.0000000000 0.0000000000 171.5130000000 -1.0000000000 0.0000000000 0.0000000000 171.5130000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 289 ? D HOH . 2 1 A HOH 291 ? D HOH . 3 1 A HOH 293 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1G ? C DUP . ? A DUP 206 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O1A ? C DUP . ? A DUP 206 ? 1_555 81.6 ? 2 O1G ? C DUP . ? A DUP 206 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O1B ? C DUP . ? A DUP 206 ? 1_555 78.2 ? 3 O1A ? C DUP . ? A DUP 206 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O1B ? C DUP . ? A DUP 206 ? 1_555 80.4 ? 4 O1G ? C DUP . ? A DUP 206 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O ? D HOH . ? A HOH 260 ? 1_555 92.7 ? 5 O1A ? C DUP . ? A DUP 206 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O ? D HOH . ? A HOH 260 ? 1_555 90.8 ? 6 O1B ? C DUP . ? A DUP 206 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O ? D HOH . ? A HOH 260 ? 1_555 168.1 ? 7 O1G ? C DUP . ? A DUP 206 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_555 85.3 ? 8 O1A ? C DUP . ? A DUP 206 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_555 164.4 ? 9 O1B ? C DUP . ? A DUP 206 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_555 88.6 ? 10 O ? D HOH . ? A HOH 260 ? 1_555 MG ? B MG . ? A MG 205 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_555 98.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 1 4 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 4 'Structure model' '_struct_ref_seq_dif.details' 21 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 DNA . ? ? ? ? 'data collection' ? ? ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 218 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 292 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 122 ? ? CZ A ARG 122 ? ? NH1 A ARG 122 ? ? 123.47 120.30 3.17 0.50 N 2 1 NE A ARG 122 ? ? CZ A ARG 122 ? ? NH2 A ARG 122 ? ? 116.88 120.30 -3.42 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 30 ? ? -142.39 33.54 2 1 ASN A 63 ? ? -133.52 -42.72 3 1 ASN A 73 ? ? 65.59 73.80 4 1 ASN A 108 ? ? -66.52 3.92 5 1 THR A 130 ? ? 26.94 64.04 6 1 ALA A 131 ? ? -145.77 -120.59 7 1 ASP A 150 ? ? -126.12 -63.36 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 200 ? A ASN 200 2 1 Y 1 A HIS 201 ? A HIS 201 3 1 Y 1 A LYS 202 ? A LYS 202 4 1 Y 1 A LYS 203 ? A LYS 203 5 1 Y 1 A ASP 204 ? A ASP 204 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DUP O4 O N N 88 DUP C4 C Y N 89 DUP C5 C Y N 90 DUP C6 C Y N 91 DUP N3 N Y N 92 DUP C2 C Y N 93 DUP O2 O N N 94 DUP N1 N Y N 95 DUP "C1'" C N R 96 DUP "C2'" C N N 97 DUP "C3'" C N S 98 DUP "O3'" O N N 99 DUP "O4'" O N N 100 DUP "C4'" C N R 101 DUP "C5'" C N N 102 DUP "O5'" O N N 103 DUP PA P N S 104 DUP O1A O N N 105 DUP O2A O N N 106 DUP N3A N N N 107 DUP PB P N R 108 DUP O1B O N N 109 DUP O2B O N N 110 DUP O3B O N N 111 DUP PG P N N 112 DUP O2G O N N 113 DUP O1G O N N 114 DUP O3G O N N 115 DUP H5 H N N 116 DUP H6 H N N 117 DUP HN3 H N N 118 DUP "H1'" H N N 119 DUP "H2'1" H N N 120 DUP "H2'2" H N N 121 DUP H1 H N N 122 DUP "H3'" H N N 123 DUP "H4'" H N N 124 DUP "H5'1" H N N 125 DUP "H5'2" H N N 126 DUP H2A H N N 127 DUP H3A H N N 128 DUP H2B H N N 129 DUP H1G H N N 130 DUP H3G H N N 131 GLN N N N N 132 GLN CA C N S 133 GLN C C N N 134 GLN O O N N 135 GLN CB C N N 136 GLN CG C N N 137 GLN CD C N N 138 GLN OE1 O N N 139 GLN NE2 N N N 140 GLN OXT O N N 141 GLN H H N N 142 GLN H2 H N N 143 GLN HA H N N 144 GLN HB2 H N N 145 GLN HB3 H N N 146 GLN HG2 H N N 147 GLN HG3 H N N 148 GLN HE21 H N N 149 GLN HE22 H N N 150 GLN HXT H N N 151 GLU N N N N 152 GLU CA C N S 153 GLU C C N N 154 GLU O O N N 155 GLU CB C N N 156 GLU CG C N N 157 GLU CD C N N 158 GLU OE1 O N N 159 GLU OE2 O N N 160 GLU OXT O N N 161 GLU H H N N 162 GLU H2 H N N 163 GLU HA H N N 164 GLU HB2 H N N 165 GLU HB3 H N N 166 GLU HG2 H N N 167 GLU HG3 H N N 168 GLU HE2 H N N 169 GLU HXT H N N 170 GLY N N N N 171 GLY CA C N N 172 GLY C C N N 173 GLY O O N N 174 GLY OXT O N N 175 GLY H H N N 176 GLY H2 H N N 177 GLY HA2 H N N 178 GLY HA3 H N N 179 GLY HXT H N N 180 HIS N N N N 181 HIS CA C N S 182 HIS C C N N 183 HIS O O N N 184 HIS CB C N N 185 HIS CG C Y N 186 HIS ND1 N Y N 187 HIS CD2 C Y N 188 HIS CE1 C Y N 189 HIS NE2 N Y N 190 HIS OXT O N N 191 HIS H H N N 192 HIS H2 H N N 193 HIS HA H N N 194 HIS HB2 H N N 195 HIS HB3 H N N 196 HIS HD1 H N N 197 HIS HD2 H N N 198 HIS HE1 H N N 199 HIS HE2 H N N 200 HIS HXT H N N 201 HOH O O N N 202 HOH H1 H N N 203 HOH H2 H N N 204 ILE N N N N 205 ILE CA C N S 206 ILE C C N N 207 ILE O O N N 208 ILE CB C N S 209 ILE CG1 C N N 210 ILE CG2 C N N 211 ILE CD1 C N N 212 ILE OXT O N N 213 ILE H H N N 214 ILE H2 H N N 215 ILE HA H N N 216 ILE HB H N N 217 ILE HG12 H N N 218 ILE HG13 H N N 219 ILE HG21 H N N 220 ILE HG22 H N N 221 ILE HG23 H N N 222 ILE HD11 H N N 223 ILE HD12 H N N 224 ILE HD13 H N N 225 ILE HXT H N N 226 LEU N N N N 227 LEU CA C N S 228 LEU C C N N 229 LEU O O N N 230 LEU CB C N N 231 LEU CG C N N 232 LEU CD1 C N N 233 LEU CD2 C N N 234 LEU OXT O N N 235 LEU H H N N 236 LEU H2 H N N 237 LEU HA H N N 238 LEU HB2 H N N 239 LEU HB3 H N N 240 LEU HG H N N 241 LEU HD11 H N N 242 LEU HD12 H N N 243 LEU HD13 H N N 244 LEU HD21 H N N 245 LEU HD22 H N N 246 LEU HD23 H N N 247 LEU HXT H N N 248 LYS N N N N 249 LYS CA C N S 250 LYS C C N N 251 LYS O O N N 252 LYS CB C N N 253 LYS CG C N N 254 LYS CD C N N 255 LYS CE C N N 256 LYS NZ N N N 257 LYS OXT O N N 258 LYS H H N N 259 LYS H2 H N N 260 LYS HA H N N 261 LYS HB2 H N N 262 LYS HB3 H N N 263 LYS HG2 H N N 264 LYS HG3 H N N 265 LYS HD2 H N N 266 LYS HD3 H N N 267 LYS HE2 H N N 268 LYS HE3 H N N 269 LYS HZ1 H N N 270 LYS HZ2 H N N 271 LYS HZ3 H N N 272 LYS HXT H N N 273 MET N N N N 274 MET CA C N S 275 MET C C N N 276 MET O O N N 277 MET CB C N N 278 MET CG C N N 279 MET SD S N N 280 MET CE C N N 281 MET OXT O N N 282 MET H H N N 283 MET H2 H N N 284 MET HA H N N 285 MET HB2 H N N 286 MET HB3 H N N 287 MET HG2 H N N 288 MET HG3 H N N 289 MET HE1 H N N 290 MET HE2 H N N 291 MET HE3 H N N 292 MET HXT H N N 293 MG MG MG N N 294 PHE N N N N 295 PHE CA C N S 296 PHE C C N N 297 PHE O O N N 298 PHE CB C N N 299 PHE CG C Y N 300 PHE CD1 C Y N 301 PHE CD2 C Y N 302 PHE CE1 C Y N 303 PHE CE2 C Y N 304 PHE CZ C Y N 305 PHE OXT O N N 306 PHE H H N N 307 PHE H2 H N N 308 PHE HA H N N 309 PHE HB2 H N N 310 PHE HB3 H N N 311 PHE HD1 H N N 312 PHE HD2 H N N 313 PHE HE1 H N N 314 PHE HE2 H N N 315 PHE HZ H N N 316 PHE HXT H N N 317 PRO N N N N 318 PRO CA C N S 319 PRO C C N N 320 PRO O O N N 321 PRO CB C N N 322 PRO CG C N N 323 PRO CD C N N 324 PRO OXT O N N 325 PRO H H N N 326 PRO HA H N N 327 PRO HB2 H N N 328 PRO HB3 H N N 329 PRO HG2 H N N 330 PRO HG3 H N N 331 PRO HD2 H N N 332 PRO HD3 H N N 333 PRO HXT H N N 334 SER N N N N 335 SER CA C N S 336 SER C C N N 337 SER O O N N 338 SER CB C N N 339 SER OG O N N 340 SER OXT O N N 341 SER H H N N 342 SER H2 H N N 343 SER HA H N N 344 SER HB2 H N N 345 SER HB3 H N N 346 SER HG H N N 347 SER HXT H N N 348 THR N N N N 349 THR CA C N S 350 THR C C N N 351 THR O O N N 352 THR CB C N R 353 THR OG1 O N N 354 THR CG2 C N N 355 THR OXT O N N 356 THR H H N N 357 THR H2 H N N 358 THR HA H N N 359 THR HB H N N 360 THR HG1 H N N 361 THR HG21 H N N 362 THR HG22 H N N 363 THR HG23 H N N 364 THR HXT H N N 365 TRP N N N N 366 TRP CA C N S 367 TRP C C N N 368 TRP O O N N 369 TRP CB C N N 370 TRP CG C Y N 371 TRP CD1 C Y N 372 TRP CD2 C Y N 373 TRP NE1 N Y N 374 TRP CE2 C Y N 375 TRP CE3 C Y N 376 TRP CZ2 C Y N 377 TRP CZ3 C Y N 378 TRP CH2 C Y N 379 TRP OXT O N N 380 TRP H H N N 381 TRP H2 H N N 382 TRP HA H N N 383 TRP HB2 H N N 384 TRP HB3 H N N 385 TRP HD1 H N N 386 TRP HE1 H N N 387 TRP HE3 H N N 388 TRP HZ2 H N N 389 TRP HZ3 H N N 390 TRP HH2 H N N 391 TRP HXT H N N 392 TYR N N N N 393 TYR CA C N S 394 TYR C C N N 395 TYR O O N N 396 TYR CB C N N 397 TYR CG C Y N 398 TYR CD1 C Y N 399 TYR CD2 C Y N 400 TYR CE1 C Y N 401 TYR CE2 C Y N 402 TYR CZ C Y N 403 TYR OH O N N 404 TYR OXT O N N 405 TYR H H N N 406 TYR H2 H N N 407 TYR HA H N N 408 TYR HB2 H N N 409 TYR HB3 H N N 410 TYR HD1 H N N 411 TYR HD2 H N N 412 TYR HE1 H N N 413 TYR HE2 H N N 414 TYR HH H N N 415 TYR HXT H N N 416 VAL N N N N 417 VAL CA C N S 418 VAL C C N N 419 VAL O O N N 420 VAL CB C N N 421 VAL CG1 C N N 422 VAL CG2 C N N 423 VAL OXT O N N 424 VAL H H N N 425 VAL H2 H N N 426 VAL HA H N N 427 VAL HB H N N 428 VAL HG11 H N N 429 VAL HG12 H N N 430 VAL HG13 H N N 431 VAL HG21 H N N 432 VAL HG22 H N N 433 VAL HG23 H N N 434 VAL HXT H N N 435 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DUP O4 C4 doub N N 83 DUP C4 C5 sing Y N 84 DUP C4 N3 sing Y N 85 DUP C5 C6 doub Y N 86 DUP C5 H5 sing N N 87 DUP C6 N1 sing Y N 88 DUP C6 H6 sing N N 89 DUP N3 C2 sing Y N 90 DUP N3 HN3 sing N N 91 DUP C2 O2 doub N N 92 DUP C2 N1 sing Y N 93 DUP N1 "C1'" sing N N 94 DUP "C1'" "C2'" sing N N 95 DUP "C1'" "O4'" sing N N 96 DUP "C1'" "H1'" sing N N 97 DUP "C2'" "C3'" sing N N 98 DUP "C2'" "H2'1" sing N N 99 DUP "C2'" "H2'2" sing N N 100 DUP "C3'" "O3'" sing N N 101 DUP "C3'" "C4'" sing N N 102 DUP "C3'" H1 sing N N 103 DUP "O3'" "H3'" sing N N 104 DUP "O4'" "C4'" sing N N 105 DUP "C4'" "C5'" sing N N 106 DUP "C4'" "H4'" sing N N 107 DUP "C5'" "O5'" sing N N 108 DUP "C5'" "H5'1" sing N N 109 DUP "C5'" "H5'2" sing N N 110 DUP "O5'" PA sing N N 111 DUP PA O1A doub N N 112 DUP PA O2A sing N N 113 DUP PA N3A sing N N 114 DUP O2A H2A sing N N 115 DUP N3A PB sing N N 116 DUP N3A H3A sing N N 117 DUP PB O1B doub N N 118 DUP PB O2B sing N N 119 DUP PB O3B sing N N 120 DUP O2B H2B sing N N 121 DUP O3B PG sing N N 122 DUP PG O2G doub N N 123 DUP PG O1G sing N N 124 DUP PG O3G sing N N 125 DUP O1G H1G sing N N 126 DUP O3G H3G sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; DUP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HXB _pdbx_initial_refinement_model.details 'PDB ENTRY 2HXB' #