data_2HYJ # _entry.id 2HYJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2HYJ RCSB RCSB038912 WWPDB D_1000038912 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC6243 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HYJ _pdbx_database_status.recvd_initial_deposition_date 2006-08-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, R.' 1 'Xu, X.' 2 'Zheng, H.' 3 'Savchenko, A.' 4 'Edwards, A.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'The crystal structure of a tetR-family transcriptional regulator from Streptomyces coelicolor' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhang, R.' 1 primary 'Xu, X.' 2 primary 'Zheng, H.' 3 primary 'Savchenko, A.' 4 primary 'Edwards, A.' 5 primary 'Joachimiak, A.' 6 # _cell.entry_id 2HYJ _cell.length_a 32.864 _cell.length_b 82.678 _cell.length_c 178.933 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HYJ _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative tetR-family transcriptional regulator' 21766.691 1 ? ? 'HTH DNA binding motif' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 127 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSPRRSAAEAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPAL AEPPGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFDVE QALFEIVAAGLALNAAMQLQHDRTAADRARRAIERALAQS ; _entity_poly.pdbx_seq_one_letter_code_can ;MSPRRSAAEAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPAL AEPPGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFDVE QALFEIVAAGLALNAAMQLQHDRTAADRARRAIERALAQS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC6243 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 PRO n 1 4 ARG n 1 5 ARG n 1 6 SER n 1 7 ALA n 1 8 ALA n 1 9 GLU n 1 10 ALA n 1 11 GLN n 1 12 ALA n 1 13 THR n 1 14 ARG n 1 15 GLY n 1 16 ARG n 1 17 ILE n 1 18 LEU n 1 19 GLY n 1 20 ARG n 1 21 ALA n 1 22 ALA n 1 23 GLU n 1 24 ILE n 1 25 ALA n 1 26 SER n 1 27 GLU n 1 28 GLU n 1 29 GLY n 1 30 LEU n 1 31 ASP n 1 32 GLY n 1 33 ILE n 1 34 THR n 1 35 ILE n 1 36 GLY n 1 37 ARG n 1 38 LEU n 1 39 ALA n 1 40 GLU n 1 41 GLU n 1 42 LEU n 1 43 GLU n 1 44 MET n 1 45 SER n 1 46 LYS n 1 47 SER n 1 48 GLY n 1 49 VAL n 1 50 HIS n 1 51 LYS n 1 52 HIS n 1 53 PHE n 1 54 GLY n 1 55 THR n 1 56 LYS n 1 57 GLU n 1 58 THR n 1 59 LEU n 1 60 GLN n 1 61 ILE n 1 62 SER n 1 63 THR n 1 64 LEU n 1 65 ASP n 1 66 LYS n 1 67 ALA n 1 68 PHE n 1 69 VAL n 1 70 ASP n 1 71 PHE n 1 72 TRP n 1 73 HIS n 1 74 ARG n 1 75 VAL n 1 76 VAL n 1 77 GLU n 1 78 PRO n 1 79 ALA n 1 80 LEU n 1 81 ALA n 1 82 GLU n 1 83 PRO n 1 84 PRO n 1 85 GLY n 1 86 LEU n 1 87 ARG n 1 88 ARG n 1 89 LEU n 1 90 ARG n 1 91 ALA n 1 92 VAL n 1 93 CYS n 1 94 ALA n 1 95 ASN n 1 96 SER n 1 97 VAL n 1 98 GLY n 1 99 TYR n 1 100 LEU n 1 101 GLU n 1 102 GLU n 1 103 PRO n 1 104 LEU n 1 105 LEU n 1 106 PRO n 1 107 GLY n 1 108 GLY n 1 109 CYS n 1 110 LEU n 1 111 LEU n 1 112 THR n 1 113 ALA n 1 114 ALA n 1 115 LEU n 1 116 SER n 1 117 GLU n 1 118 TYR n 1 119 ASP n 1 120 GLY n 1 121 ARG n 1 122 PRO n 1 123 GLY n 1 124 ARG n 1 125 VAL n 1 126 ARG n 1 127 ASP n 1 128 ALA n 1 129 VAL n 1 130 ALA n 1 131 GLU n 1 132 VAL n 1 133 TRP n 1 134 SER n 1 135 ARG n 1 136 TRP n 1 137 ARG n 1 138 GLU n 1 139 GLN n 1 140 LEU n 1 141 ARG n 1 142 ALA n 1 143 ASP n 1 144 LEU n 1 145 THR n 1 146 ALA n 1 147 ALA n 1 148 VAL n 1 149 ASP n 1 150 LYS n 1 151 GLY n 1 152 GLU n 1 153 LEU n 1 154 PRO n 1 155 ALA n 1 156 GLY n 1 157 PHE n 1 158 ASP n 1 159 VAL n 1 160 GLU n 1 161 GLN n 1 162 ALA n 1 163 LEU n 1 164 PHE n 1 165 GLU n 1 166 ILE n 1 167 VAL n 1 168 ALA n 1 169 ALA n 1 170 GLY n 1 171 LEU n 1 172 ALA n 1 173 LEU n 1 174 ASN n 1 175 ALA n 1 176 ALA n 1 177 MET n 1 178 GLN n 1 179 LEU n 1 180 GLN n 1 181 HIS n 1 182 ASP n 1 183 ARG n 1 184 THR n 1 185 ALA n 1 186 ALA n 1 187 ASP n 1 188 ARG n 1 189 ALA n 1 190 ARG n 1 191 ARG n 1 192 ALA n 1 193 ILE n 1 194 GLU n 1 195 ARG n 1 196 ALA n 1 197 LEU n 1 198 ALA n 1 199 GLN n 1 200 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptomyces _entity_src_gen.pdbx_gene_src_gene GI:32141251 _entity_src_gen.gene_src_species 'Streptomyces coelicolor' _entity_src_gen.gene_src_strain 'A3(2)' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces coelicolor' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 100226 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8CJS4_STRCO _struct_ref.pdbx_db_accession Q8CJS4 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HYJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 200 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8CJS4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 200 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 200 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HYJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_percent_sol 55.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M Na Hepes, 0.2M Calcium chloride, 28% PEG400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-08-04 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97980 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97980 # _reflns.entry_id 2HYJ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.19 _reflns.d_resolution_low 89.4 _reflns.number_all 12463 _reflns.number_obs 12388 _reflns.percent_possible_obs 99.43 _reflns.pdbx_Rmerge_I_obs 0.122 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.04 _reflns.B_iso_Wilson_estimate 38 _reflns.pdbx_redundancy 8.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.19 _reflns_shell.d_res_low 2.25 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.56 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 7.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 924 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2HYJ _refine.ls_number_reflns_obs 12388 _refine.ls_number_reflns_all 12463 _refine.pdbx_ls_sigma_I 2 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.7 _refine.ls_d_res_high 2.19 _refine.ls_percent_reflns_obs 99.43 _refine.ls_R_factor_obs 0.1939 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1913 _refine.ls_R_factor_R_free 0.2469 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 635 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.913 _refine.B_iso_mean 37.136 _refine.aniso_B[1][1] 1.18 _refine.aniso_B[2][2] -0.34 _refine.aniso_B[3][3] -0.84 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.222 _refine.pdbx_overall_ESU_R_Free 0.198 _refine.overall_SU_ML 0.129 _refine.overall_SU_B 9.673 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2HYJ _refine_analyze.Luzzati_coordinate_error_obs 0.035 _refine_analyze.Luzzati_sigma_a_obs 0.32 _refine_analyze.Luzzati_d_res_low_obs 6.0 _refine_analyze.Luzzati_coordinate_error_free 0.042 _refine_analyze.Luzzati_sigma_a_free 0.5 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1474 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1607 _refine_hist.d_res_high 2.19 _refine_hist.d_res_low 44.7 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1501 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.289 1.969 ? 2031 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.972 5.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.138 22.676 ? 71 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.561 15.000 ? 251 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.117 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 227 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1148 'X-RAY DIFFRACTION' ? r_nbd_refined 0.216 0.200 ? 722 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.296 0.200 ? 1043 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.178 0.200 ? 107 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.020 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.171 0.200 ? 67 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.181 0.200 ? 26 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.479 0.200 ? 2 'X-RAY DIFFRACTION' ? r_mcbond_it 0.717 1.500 ? 986 'X-RAY DIFFRACTION' ? r_mcangle_it 1.219 2.000 ? 1509 'X-RAY DIFFRACTION' ? r_scbond_it 2.351 3.000 ? 578 'X-RAY DIFFRACTION' ? r_scangle_it 3.836 4.500 ? 522 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.19 _refine_ls_shell.d_res_low 2.25 _refine_ls_shell.number_reflns_R_work 824 _refine_ls_shell.R_factor_R_work 0.21 _refine_ls_shell.percent_reflns_obs 92.86 _refine_ls_shell.R_factor_R_free 0.325 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 858 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HYJ _struct.title 'The crystal structure of a tetR-family transcriptional regulator from Streptomyces coelicolor' _struct.pdbx_descriptor 'Putative tetR-family transcriptional regulator' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HYJ _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;tetR, HTH DNA binding motif, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;This protein exists as dimer. The second part of the biological assembly is generated by the two fold axis: 1-x, 1-y,z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 9 ? GLY A 29 ? GLU A 9 GLY A 29 1 ? 21 HELX_P HELX_P2 2 LEU A 30 ? ILE A 33 ? LEU A 30 ILE A 33 5 ? 4 HELX_P HELX_P3 3 THR A 34 ? GLU A 43 ? THR A 34 GLU A 43 1 ? 10 HELX_P HELX_P4 4 SER A 45 ? LYS A 51 ? SER A 45 LYS A 51 1 ? 7 HELX_P HELX_P5 5 THR A 55 ? VAL A 76 ? THR A 55 VAL A 76 1 ? 22 HELX_P HELX_P6 6 GLU A 77 ? GLU A 82 ? GLU A 77 GLU A 82 5 ? 6 HELX_P HELX_P7 7 GLY A 85 ? GLU A 102 ? GLY A 85 GLU A 102 1 ? 18 HELX_P HELX_P8 8 CYS A 109 ? ASP A 119 ? CYS A 109 ASP A 119 1 ? 11 HELX_P HELX_P9 9 GLY A 123 ? LYS A 150 ? GLY A 123 LYS A 150 1 ? 28 HELX_P HELX_P10 10 ASP A 158 ? HIS A 181 ? ASP A 158 HIS A 181 1 ? 24 HELX_P HELX_P11 11 THR A 184 ? SER A 200 ? THR A 184 SER A 200 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 116 O ? ? ? 1_555 C SO4 . O2 ? ? A SER 116 A SO4 202 1_555 ? ? ? ? ? ? ? 2.042 ? metalc1 metalc ? ? B CA . CA ? ? ? 1_555 A GLU 138 OE2 ? ? A CA 201 A GLU 138 1_555 ? ? ? ? ? ? ? 2.399 ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 220 1_455 ? ? ? ? ? ? ? 2.331 ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 260 8_455 ? ? ? ? ? ? ? 2.875 ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 306 1_455 ? ? ? ? ? ? ? 3.204 ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 211 8_455 ? ? ? ? ? ? ? 1.752 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CA A 201' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 138 ? GLU A 138 . ? 1_555 ? 2 AC1 4 HOH D . ? HOH A 211 . ? 8_455 ? 3 AC1 4 HOH D . ? HOH A 220 . ? 1_455 ? 4 AC1 4 HOH D . ? HOH A 260 . ? 8_455 ? 5 AC2 8 SER A 26 ? SER A 26 . ? 2_665 ? 6 AC2 8 GLY A 107 ? GLY A 107 . ? 2_665 ? 7 AC2 8 ALA A 113 ? ALA A 113 . ? 2_665 ? 8 AC2 8 SER A 116 ? SER A 116 . ? 1_555 ? 9 AC2 8 GLU A 117 ? GLU A 117 . ? 1_555 ? 10 AC2 8 ASP A 119 ? ASP A 119 . ? 1_555 ? 11 AC2 8 GLY A 120 ? GLY A 120 . ? 1_555 ? 12 AC2 8 HOH D . ? HOH A 270 . ? 2_665 ? # _database_PDB_matrix.entry_id 2HYJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HYJ _atom_sites.fract_transf_matrix[1][1] 0.030428 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012095 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005589 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 ARG 4 4 ? ? ? A . n A 1 5 ARG 5 5 ? ? ? A . n A 1 6 SER 6 6 ? ? ? A . n A 1 7 ALA 7 7 ? ? ? A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 CYS 93 93 93 CYS CYS A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 CYS 109 109 109 CYS CYS A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 TRP 133 133 133 TRP TRP A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 TRP 136 136 136 TRP TRP A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 ASP 149 149 149 ASP ASP A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 PRO 154 154 154 PRO PRO A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 PHE 157 157 157 PHE PHE A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 GLU 160 160 160 GLU GLU A . n A 1 161 GLN 161 161 161 GLN GLN A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 ASN 174 174 174 ASN ASN A . n A 1 175 ALA 175 175 175 ALA ALA A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 MET 177 177 177 MET MET A . n A 1 178 GLN 178 178 178 GLN GLN A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 GLN 180 180 180 GLN GLN A . n A 1 181 HIS 181 181 181 HIS HIS A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 ARG 183 183 183 ARG ARG A . n A 1 184 THR 184 184 184 THR THR A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 ARG 188 188 188 ARG ARG A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 ALA 196 196 196 ALA ALA A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 GLN 199 199 199 GLN GLN A . n A 1 200 SER 200 200 200 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3810 ? 1 MORE -63 ? 1 'SSA (A^2)' 16590 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 32.8640000000 0.0000000000 -1.0000000000 0.0000000000 82.6780000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 203 ? D HOH . 2 1 A HOH 214 ? D HOH . 3 1 A HOH 313 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 138 ? A GLU 138 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 220 ? 1_455 133.7 ? 2 OE2 ? A GLU 138 ? A GLU 138 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 260 ? 8_455 146.1 ? 3 O ? D HOH . ? A HOH 220 ? 1_455 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 260 ? 8_455 62.4 ? 4 OE2 ? A GLU 138 ? A GLU 138 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_455 86.6 ? 5 O ? D HOH . ? A HOH 220 ? 1_455 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_455 98.6 ? 6 O ? D HOH . ? A HOH 260 ? 8_455 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 306 ? 1_455 123.7 ? 7 OE2 ? A GLU 138 ? A GLU 138 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 211 ? 8_455 133.1 ? 8 O ? D HOH . ? A HOH 220 ? 1_455 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 211 ? 8_455 92.3 ? 9 O ? D HOH . ? A HOH 260 ? 8_455 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 211 ? 8_455 54.7 ? 10 O ? D HOH . ? A HOH 306 ? 1_455 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 211 ? 8_455 75.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-05 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 13.0430 _pdbx_refine_tls.origin_y 29.7060 _pdbx_refine_tls.origin_z 30.0020 _pdbx_refine_tls.T[1][1] -0.1146 _pdbx_refine_tls.T[2][2] -0.0966 _pdbx_refine_tls.T[3][3] -0.1208 _pdbx_refine_tls.T[1][2] -0.0102 _pdbx_refine_tls.T[1][3] 0.0107 _pdbx_refine_tls.T[2][3] 0.0107 _pdbx_refine_tls.L[1][1] 0.6923 _pdbx_refine_tls.L[2][2] 1.8241 _pdbx_refine_tls.L[3][3] 2.7763 _pdbx_refine_tls.L[1][2] 0.0857 _pdbx_refine_tls.L[1][3] -0.0582 _pdbx_refine_tls.L[2][3] 0.1885 _pdbx_refine_tls.S[1][1] 0.0523 _pdbx_refine_tls.S[1][2] 0.1832 _pdbx_refine_tls.S[1][3] 0.0588 _pdbx_refine_tls.S[2][1] 0.1456 _pdbx_refine_tls.S[2][2] -0.0702 _pdbx_refine_tls.S[2][3] 0.0001 _pdbx_refine_tls.S[3][1] 0.3080 _pdbx_refine_tls.S[3][2] -0.0421 _pdbx_refine_tls.S[3][3] 0.0179 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 9 A 9 A 50 A 50 ? 'X-RAY DIFFRACTION' ? 2 1 A 51 A 51 A 100 A 100 ? 'X-RAY DIFFRACTION' ? 3 1 A 101 A 101 A 150 A 150 ? 'X-RAY DIFFRACTION' ? 4 1 A 151 A 151 A 200 A 200 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 SHELXE 'model building' . ? 6 SOLVE phasing . ? 7 RESOLVE phasing . ? 8 ARP/wARP 'model building' . ? 9 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 205 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 311 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 243 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 249 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_555 _pdbx_validate_symm_contact.dist 2.09 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 38 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 38 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 38 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.98 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation -15.32 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 199 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -152.33 _pdbx_validate_torsion.psi 0.08 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A ARG 4 ? A ARG 4 5 1 Y 1 A ARG 5 ? A ARG 5 6 1 Y 1 A SER 6 ? A SER 6 7 1 Y 1 A ALA 7 ? A ALA 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'SULFATE ION' SO4 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 201 1 CA CA A . C 3 SO4 1 202 1 SO4 SO4 A . D 4 HOH 1 203 1 HOH HOH A . D 4 HOH 2 204 2 HOH HOH A . D 4 HOH 3 205 3 HOH HOH A . D 4 HOH 4 206 4 HOH HOH A . D 4 HOH 5 207 5 HOH HOH A . D 4 HOH 6 208 6 HOH HOH A . D 4 HOH 7 209 7 HOH HOH A . D 4 HOH 8 210 8 HOH HOH A . D 4 HOH 9 211 9 HOH HOH A . D 4 HOH 10 212 10 HOH HOH A . D 4 HOH 11 213 11 HOH HOH A . D 4 HOH 12 214 12 HOH HOH A . D 4 HOH 13 215 13 HOH HOH A . D 4 HOH 14 216 14 HOH HOH A . D 4 HOH 15 217 15 HOH HOH A . D 4 HOH 16 218 16 HOH HOH A . D 4 HOH 17 219 17 HOH HOH A . D 4 HOH 18 220 4 HOH HOH A . D 4 HOH 19 221 19 HOH HOH A . D 4 HOH 20 222 20 HOH HOH A . D 4 HOH 21 223 21 HOH HOH A . D 4 HOH 22 224 22 HOH HOH A . D 4 HOH 23 225 23 HOH HOH A . D 4 HOH 24 226 24 HOH HOH A . D 4 HOH 25 227 25 HOH HOH A . D 4 HOH 26 228 26 HOH HOH A . D 4 HOH 27 229 27 HOH HOH A . D 4 HOH 28 230 28 HOH HOH A . D 4 HOH 29 231 29 HOH HOH A . D 4 HOH 30 232 30 HOH HOH A . D 4 HOH 31 233 31 HOH HOH A . D 4 HOH 32 234 32 HOH HOH A . D 4 HOH 33 235 33 HOH HOH A . D 4 HOH 34 236 34 HOH HOH A . D 4 HOH 35 237 5 HOH HOH A . D 4 HOH 36 238 36 HOH HOH A . D 4 HOH 37 239 37 HOH HOH A . D 4 HOH 38 240 38 HOH HOH A . D 4 HOH 39 241 39 HOH HOH A . D 4 HOH 40 242 40 HOH HOH A . D 4 HOH 41 243 6 HOH HOH A . D 4 HOH 42 244 42 HOH HOH A . D 4 HOH 43 245 43 HOH HOH A . D 4 HOH 44 246 44 HOH HOH A . D 4 HOH 45 247 45 HOH HOH A . D 4 HOH 46 248 7 HOH HOH A . D 4 HOH 47 249 47 HOH HOH A . D 4 HOH 48 250 48 HOH HOH A . D 4 HOH 49 251 49 HOH HOH A . D 4 HOH 50 252 9 HOH HOH A . D 4 HOH 51 253 51 HOH HOH A . D 4 HOH 52 254 52 HOH HOH A . D 4 HOH 53 255 53 HOH HOH A . D 4 HOH 54 256 54 HOH HOH A . D 4 HOH 55 257 55 HOH HOH A . D 4 HOH 56 258 56 HOH HOH A . D 4 HOH 57 259 57 HOH HOH A . D 4 HOH 58 260 58 HOH HOH A . D 4 HOH 59 261 59 HOH HOH A . D 4 HOH 60 262 60 HOH HOH A . D 4 HOH 61 263 11 HOH HOH A . D 4 HOH 62 264 62 HOH HOH A . D 4 HOH 63 265 63 HOH HOH A . D 4 HOH 64 266 64 HOH HOH A . D 4 HOH 65 267 65 HOH HOH A . D 4 HOH 66 268 66 HOH HOH A . D 4 HOH 67 269 67 HOH HOH A . D 4 HOH 68 270 68 HOH HOH A . D 4 HOH 69 271 69 HOH HOH A . D 4 HOH 70 272 70 HOH HOH A . D 4 HOH 71 273 71 HOH HOH A . D 4 HOH 72 274 72 HOH HOH A . D 4 HOH 73 275 73 HOH HOH A . D 4 HOH 74 276 74 HOH HOH A . D 4 HOH 75 277 75 HOH HOH A . D 4 HOH 76 278 76 HOH HOH A . D 4 HOH 77 279 77 HOH HOH A . D 4 HOH 78 280 78 HOH HOH A . D 4 HOH 79 281 79 HOH HOH A . D 4 HOH 80 282 80 HOH HOH A . D 4 HOH 81 283 12 HOH HOH A . D 4 HOH 82 284 82 HOH HOH A . D 4 HOH 83 285 83 HOH HOH A . D 4 HOH 84 286 84 HOH HOH A . D 4 HOH 85 287 85 HOH HOH A . D 4 HOH 86 288 86 HOH HOH A . D 4 HOH 87 289 87 HOH HOH A . D 4 HOH 88 290 88 HOH HOH A . D 4 HOH 89 291 89 HOH HOH A . D 4 HOH 90 292 90 HOH HOH A . D 4 HOH 91 293 91 HOH HOH A . D 4 HOH 92 294 92 HOH HOH A . D 4 HOH 93 295 13 HOH HOH A . D 4 HOH 94 296 14 HOH HOH A . D 4 HOH 95 297 95 HOH HOH A . D 4 HOH 96 298 96 HOH HOH A . D 4 HOH 97 299 97 HOH HOH A . D 4 HOH 98 300 98 HOH HOH A . D 4 HOH 99 301 99 HOH HOH A . D 4 HOH 100 302 100 HOH HOH A . D 4 HOH 101 303 101 HOH HOH A . D 4 HOH 102 304 102 HOH HOH A . D 4 HOH 103 305 103 HOH HOH A . D 4 HOH 104 306 104 HOH HOH A . D 4 HOH 105 307 105 HOH HOH A . D 4 HOH 106 308 106 HOH HOH A . D 4 HOH 107 309 107 HOH HOH A . D 4 HOH 108 310 16 HOH HOH A . D 4 HOH 109 311 109 HOH HOH A . D 4 HOH 110 312 17 HOH HOH A . D 4 HOH 111 313 111 HOH HOH A . D 4 HOH 112 314 112 HOH HOH A . D 4 HOH 113 315 20 HOH HOH A . D 4 HOH 114 316 114 HOH HOH A . D 4 HOH 115 317 115 HOH HOH A . D 4 HOH 116 318 116 HOH HOH A . D 4 HOH 117 319 117 HOH HOH A . D 4 HOH 118 320 21 HOH HOH A . D 4 HOH 119 321 119 HOH HOH A . D 4 HOH 120 322 22 HOH HOH A . D 4 HOH 121 323 121 HOH HOH A . D 4 HOH 122 324 23 HOH HOH A . D 4 HOH 123 325 24 HOH HOH A . D 4 HOH 124 326 25 HOH HOH A . D 4 HOH 125 327 27 HOH HOH A . D 4 HOH 126 328 28 HOH HOH A . D 4 HOH 127 329 32 HOH HOH A . #