HEADER LIGAND BINDING, TRANSPORT PROTEIN 09-AUG-06 2HZL TITLE CRYSTAL STRUCTURES OF A SODIUM-ALPHA-KETO ACID BINDING SUBUNIT FROM A TITLE 2 TRAP TRANSPORTER IN ITS CLOSED FORMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP-T FAMILY SORBITOL/MANNITOL TRANSPORTER, PERIPLASMIC COMPND 3 BINDING PROTEIN, SMOM; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: SKAP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES 2.4.1; SOURCE 3 ORGANISM_TAXID: 272943; SOURCE 4 STRAIN: ATCC 17023; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET101 KEYWDS TRAP TRANSPORTER, PERIPLASMIC SUBUNIT, LIGAND BINDING, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.GONIN,P.ARNOUX,B.PIERRU,B.ALONSO,M.SABATY,D.PIGNOL REVDAT 5 15-NOV-23 2HZL 1 LINK ATOM REVDAT 4 30-AUG-23 2HZL 1 REMARK LINK REVDAT 3 18-OCT-17 2HZL 1 REMARK REVDAT 2 24-FEB-09 2HZL 1 VERSN REVDAT 1 03-APR-07 2HZL 0 JRNL AUTH S.GONIN,P.ARNOUX,B.PIERRU,J.LAVERGNE,B.ALONSO,M.SABATY, JRNL AUTH 2 D.PIGNOL JRNL TITL CRYSTAL STRUCTURES OF AN EXTRACYTOPLASMIC SOLUTE RECEPTOR JRNL TITL 2 FROM A TRAP TRANSPORTER IN ITS OPEN AND CLOSED FORMS REVEAL JRNL TITL 3 A HELIX-SWAPPED DIMER REQUIRING A CATION FOR ALPHA-KETO ACID JRNL TITL 4 BINDING. JRNL REF BMC STRUCT.BIOL. V. 7 11 2007 JRNL REFN ESSN 1472-6807 JRNL PMID 17362499 JRNL DOI 10.1186/1472-6807-7-11 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 137316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6908 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9499 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 510 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5251 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5488 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7482 ; 1.143 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 689 ; 5.762 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 253 ;37.896 ;24.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 825 ;12.769 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;12.748 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 775 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4332 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2905 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3818 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 398 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.051 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.107 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3364 ; 0.537 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5386 ; 1.038 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2257 ; 1.701 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2090 ; 2.761 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97565 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 137318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2HZK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE 1.4M AMMONIUM REMARK 280 SULFATE 30MM PYRUVATE, PH 5.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.01050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.02850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.01050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.02850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 SER A 5 REMARK 465 PHE A 6 REMARK 465 ILE A 7 REMARK 465 THR A 8 REMARK 465 LYS A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 VAL A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 25 REMARK 465 ALA A 26 REMARK 465 GLN A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 LYS A 31 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ARG B 3 REMARK 465 ARG B 4 REMARK 465 SER B 5 REMARK 465 PHE B 6 REMARK 465 ILE B 7 REMARK 465 THR B 8 REMARK 465 LYS B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 VAL B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 SER B 18 REMARK 465 ALA B 19 REMARK 465 LEU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 PRO B 23 REMARK 465 ALA B 24 REMARK 465 LEU B 25 REMARK 465 ALA B 26 REMARK 465 GLN B 27 REMARK 465 SER B 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 199 O HOH A 823 2.14 REMARK 500 O HOH A 603 O HOH A 823 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 46 -80.24 -74.80 REMARK 500 ALA A 112 -77.49 -87.32 REMARK 500 SER A 117 -158.29 -103.35 REMARK 500 TRP A 215 -83.69 -130.08 REMARK 500 VAL A 216 -60.94 -141.60 REMARK 500 ILE A 347 -101.10 -91.65 REMARK 500 ILE A 347 -100.00 -92.81 REMARK 500 THR B 46 -78.27 -77.32 REMARK 500 ASP B 105 118.33 -166.68 REMARK 500 ALA B 112 -77.17 -92.37 REMARK 500 ALA B 113 145.97 -170.71 REMARK 500 SER B 117 -159.64 -101.45 REMARK 500 TRP B 215 -86.16 -132.76 REMARK 500 VAL B 216 -61.86 -139.71 REMARK 500 ILE B 347 -95.23 -93.48 REMARK 500 ILE B 347 -100.92 -90.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 156 OE1 REMARK 620 2 GLU A 214 OE1 87.8 REMARK 620 3 GLU A 214 OE2 129.9 48.8 REMARK 620 4 TRP A 215 O 82.6 80.6 108.3 REMARK 620 5 GLU A 240 OE2 80.7 107.0 89.0 161.3 REMARK 620 6 PYR A 601 O3 89.4 157.1 140.5 76.5 94.9 REMARK 620 7 PYR A 601 OXT 155.6 115.8 74.0 94.9 96.9 66.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 156 OE1 REMARK 620 2 GLU B 214 OE1 91.6 REMARK 620 3 TRP B 215 O 80.7 81.5 REMARK 620 4 GLU B 240 OE2 80.7 106.7 159.9 REMARK 620 5 PYR B 602 OXT 156.6 111.1 96.6 97.3 REMARK 620 6 PYR B 602 O3 90.2 158.5 77.7 94.7 66.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HZK RELATED DB: PDB REMARK 900 OPEN UNLIGANDED FORM DBREF 2HZL A 1 365 UNP Q3J1R2 Q3J1R2_RHOS4 1 365 DBREF 2HZL B 1 365 UNP Q3J1R2 Q3J1R2_RHOS4 1 365 SEQRES 1 A 365 MET ASP ARG ARG SER PHE ILE THR LYS ALA ALA VAL GLY SEQRES 2 A 365 GLY ALA ALA ALA SER ALA LEU ALA ALA PRO ALA LEU ALA SEQRES 3 A 365 GLN SER ALA PRO LYS VAL THR TRP ARG LEU ALA SER SER SEQRES 4 A 365 PHE PRO LYS SER LEU ASP THR ILE PHE GLY GLY ALA GLU SEQRES 5 A 365 VAL LEU SER LYS MET LEU SER GLU ALA THR ASP GLY ASN SEQRES 6 A 365 PHE GLN ILE GLN VAL PHE SER ALA GLY GLU LEU VAL PRO SEQRES 7 A 365 GLY LEU GLN ALA ALA ASP ALA VAL THR GLU GLY THR VAL SEQRES 8 A 365 GLU CYS CYS HIS THR VAL GLY TYR TYR TYR TRP GLY LYS SEQRES 9 A 365 ASP PRO THR PHE ALA LEU ALA ALA ALA VAL PRO PHE SER SEQRES 10 A 365 LEU SER ALA ARG GLY ILE ASN ALA TRP HIS TYR HIS GLY SEQRES 11 A 365 GLY GLY ILE ASP LEU TYR ASN GLU PHE LEU SER GLN HIS SEQRES 12 A 365 ASN ILE VAL ALA PHE PRO GLY GLY ASN THR GLY VAL GLN SEQRES 13 A 365 MET GLY GLY TRP PHE ARG ARG GLU ILE ASN THR VAL ALA SEQRES 14 A 365 ASP MET GLN GLY LEU LYS MET ARG VAL GLY GLY PHE ALA SEQRES 15 A 365 GLY LYS VAL MET GLU ARG LEU GLY VAL VAL PRO GLN GLN SEQRES 16 A 365 ILE ALA GLY GLY ASP ILE TYR PRO ALA LEU GLU LYS GLY SEQRES 17 A 365 THR ILE ASP ALA THR GLU TRP VAL GLY PRO TYR ASP ASP SEQRES 18 A 365 GLU LYS LEU GLY PHE PHE LYS VAL ALA PRO TYR TYR TYR SEQRES 19 A 365 TYR PRO GLY TRP TRP GLU GLY GLY PRO THR VAL HIS PHE SEQRES 20 A 365 MET PHE ASN LYS SER ALA TYR GLU GLY LEU THR PRO THR SEQRES 21 A 365 TYR GLN SER LEU LEU ARG THR ALA CYS HIS ALA ALA ASP SEQRES 22 A 365 ALA ASN MET LEU GLN LEU TYR ASP TRP LYS ASN PRO THR SEQRES 23 A 365 ALA ILE LYS SER LEU VAL ALA GLN GLY THR GLN LEU ARG SEQRES 24 A 365 PRO PHE SER PRO GLU ILE LEU GLN ALA CYS PHE GLU ALA SEQRES 25 A 365 ALA ASN GLU VAL TYR ALA GLU MET GLU ALA SER ASN PRO SEQRES 26 A 365 ALA PHE LYS LYS ILE TRP ASP SER ILE LYS ALA PHE ARG SEQRES 27 A 365 SER GLU HIS TYR THR TRP ALA GLN ILE ALA GLU TYR ASN SEQRES 28 A 365 TYR ASP THR PHE MET MET VAL GLN GLN ASN ALA GLY LYS SEQRES 29 A 365 LEU SEQRES 1 B 365 MET ASP ARG ARG SER PHE ILE THR LYS ALA ALA VAL GLY SEQRES 2 B 365 GLY ALA ALA ALA SER ALA LEU ALA ALA PRO ALA LEU ALA SEQRES 3 B 365 GLN SER ALA PRO LYS VAL THR TRP ARG LEU ALA SER SER SEQRES 4 B 365 PHE PRO LYS SER LEU ASP THR ILE PHE GLY GLY ALA GLU SEQRES 5 B 365 VAL LEU SER LYS MET LEU SER GLU ALA THR ASP GLY ASN SEQRES 6 B 365 PHE GLN ILE GLN VAL PHE SER ALA GLY GLU LEU VAL PRO SEQRES 7 B 365 GLY LEU GLN ALA ALA ASP ALA VAL THR GLU GLY THR VAL SEQRES 8 B 365 GLU CYS CYS HIS THR VAL GLY TYR TYR TYR TRP GLY LYS SEQRES 9 B 365 ASP PRO THR PHE ALA LEU ALA ALA ALA VAL PRO PHE SER SEQRES 10 B 365 LEU SER ALA ARG GLY ILE ASN ALA TRP HIS TYR HIS GLY SEQRES 11 B 365 GLY GLY ILE ASP LEU TYR ASN GLU PHE LEU SER GLN HIS SEQRES 12 B 365 ASN ILE VAL ALA PHE PRO GLY GLY ASN THR GLY VAL GLN SEQRES 13 B 365 MET GLY GLY TRP PHE ARG ARG GLU ILE ASN THR VAL ALA SEQRES 14 B 365 ASP MET GLN GLY LEU LYS MET ARG VAL GLY GLY PHE ALA SEQRES 15 B 365 GLY LYS VAL MET GLU ARG LEU GLY VAL VAL PRO GLN GLN SEQRES 16 B 365 ILE ALA GLY GLY ASP ILE TYR PRO ALA LEU GLU LYS GLY SEQRES 17 B 365 THR ILE ASP ALA THR GLU TRP VAL GLY PRO TYR ASP ASP SEQRES 18 B 365 GLU LYS LEU GLY PHE PHE LYS VAL ALA PRO TYR TYR TYR SEQRES 19 B 365 TYR PRO GLY TRP TRP GLU GLY GLY PRO THR VAL HIS PHE SEQRES 20 B 365 MET PHE ASN LYS SER ALA TYR GLU GLY LEU THR PRO THR SEQRES 21 B 365 TYR GLN SER LEU LEU ARG THR ALA CYS HIS ALA ALA ASP SEQRES 22 B 365 ALA ASN MET LEU GLN LEU TYR ASP TRP LYS ASN PRO THR SEQRES 23 B 365 ALA ILE LYS SER LEU VAL ALA GLN GLY THR GLN LEU ARG SEQRES 24 B 365 PRO PHE SER PRO GLU ILE LEU GLN ALA CYS PHE GLU ALA SEQRES 25 B 365 ALA ASN GLU VAL TYR ALA GLU MET GLU ALA SER ASN PRO SEQRES 26 B 365 ALA PHE LYS LYS ILE TRP ASP SER ILE LYS ALA PHE ARG SEQRES 27 B 365 SER GLU HIS TYR THR TRP ALA GLN ILE ALA GLU TYR ASN SEQRES 28 B 365 TYR ASP THR PHE MET MET VAL GLN GLN ASN ALA GLY LYS SEQRES 29 B 365 LEU HET NA A 500 1 HET PYR A 601 6 HET NA B 501 1 HET PYR B 602 6 HET PYR B 603 6 HETNAM NA SODIUM ION HETNAM PYR PYRUVIC ACID FORMUL 3 NA 2(NA 1+) FORMUL 4 PYR 3(C3 H4 O3) FORMUL 8 HOH *471(H2 O) HELIX 1 1 PHE A 48 THR A 62 1 15 HELIX 2 2 PRO A 78 LEU A 80 5 3 HELIX 3 3 GLN A 81 GLU A 88 1 8 HELIX 4 4 VAL A 97 TRP A 102 5 6 HELIX 5 5 ASP A 105 LEU A 110 5 6 HELIX 6 6 SER A 119 GLY A 130 1 12 HELIX 7 7 GLY A 131 SER A 141 1 11 HELIX 8 8 VAL A 168 GLN A 172 5 5 HELIX 9 9 PHE A 181 ARG A 188 1 8 HELIX 10 10 ASP A 200 LYS A 207 1 8 HELIX 11 11 GLY A 217 GLY A 225 1 9 HELIX 12 12 PHE A 226 VAL A 229 5 4 HELIX 13 13 LYS A 251 LEU A 257 1 7 HELIX 14 14 THR A 258 GLN A 294 1 37 HELIX 15 15 SER A 302 ASN A 324 1 23 HELIX 16 16 ASN A 324 ALA A 345 1 22 HELIX 17 17 ILE A 347 ALA A 362 1 16 HELIX 18 18 PHE B 48 THR B 62 1 15 HELIX 19 19 PRO B 78 LEU B 80 5 3 HELIX 20 20 GLN B 81 GLU B 88 1 8 HELIX 21 21 VAL B 97 TRP B 102 5 6 HELIX 22 22 ASP B 105 LEU B 110 5 6 HELIX 23 23 SER B 119 GLY B 130 1 12 HELIX 24 24 GLY B 131 SER B 141 1 11 HELIX 25 25 THR B 167 GLN B 172 5 6 HELIX 26 26 PHE B 181 LEU B 189 1 9 HELIX 27 27 ALA B 197 GLY B 199 5 3 HELIX 28 28 ASP B 200 LYS B 207 1 8 HELIX 29 29 GLY B 217 GLY B 225 1 9 HELIX 30 30 PHE B 226 VAL B 229 5 4 HELIX 31 31 LYS B 251 GLY B 256 1 6 HELIX 32 32 THR B 258 GLN B 294 1 37 HELIX 33 33 SER B 302 ASN B 324 1 23 HELIX 34 34 ASN B 324 ALA B 345 1 22 HELIX 35 35 ILE B 347 ALA B 362 1 16 SHEET 1 A 5 GLN A 67 PHE A 71 0 SHEET 2 A 5 THR A 33 SER A 38 1 N TRP A 34 O GLN A 69 SHEET 3 A 5 CYS A 93 THR A 96 1 O CYS A 93 N ALA A 37 SHEET 4 A 5 THR A 244 ASN A 250 -1 O HIS A 246 N THR A 96 SHEET 5 A 5 ILE A 145 ASN A 152 -1 N VAL A 146 O PHE A 249 SHEET 1 B 3 TRP A 160 PHE A 161 0 SHEET 2 B 3 TYR A 232 TYR A 235 -1 O TYR A 232 N PHE A 161 SHEET 3 B 3 GLN A 297 PRO A 300 1 O GLN A 297 N TYR A 233 SHEET 1 C 3 VAL A 192 GLN A 194 0 SHEET 2 C 3 LYS A 175 ARG A 177 1 N MET A 176 O VAL A 192 SHEET 3 C 3 ALA A 212 THR A 213 1 O ALA A 212 N ARG A 177 SHEET 1 D 5 PHE B 66 PHE B 71 0 SHEET 2 D 5 VAL B 32 SER B 38 1 N VAL B 32 O GLN B 67 SHEET 3 D 5 CYS B 93 THR B 96 1 O CYS B 93 N ALA B 37 SHEET 4 D 5 THR B 244 ASN B 250 -1 O MET B 248 N CYS B 94 SHEET 5 D 5 ILE B 145 ASN B 152 -1 N VAL B 146 O PHE B 249 SHEET 1 E 3 TRP B 160 PHE B 161 0 SHEET 2 E 3 TYR B 232 TYR B 235 -1 O TYR B 232 N PHE B 161 SHEET 3 E 3 GLN B 297 PRO B 300 1 O GLN B 297 N TYR B 233 SHEET 1 F 3 VAL B 192 GLN B 194 0 SHEET 2 F 3 LYS B 175 ARG B 177 1 N MET B 176 O GLN B 194 SHEET 3 F 3 ALA B 212 THR B 213 1 O ALA B 212 N ARG B 177 LINK OE1 GLN A 156 NA NA A 500 1555 1555 2.37 LINK OE1 GLU A 214 NA NA A 500 1555 1555 2.37 LINK OE2 GLU A 214 NA NA A 500 1555 1555 2.81 LINK O TRP A 215 NA NA A 500 1555 1555 2.35 LINK OE2 GLU A 240 NA NA A 500 1555 1555 2.44 LINK NA NA A 500 O3 PYR A 601 1555 1555 2.49 LINK NA NA A 500 OXT PYR A 601 1555 1555 2.38 LINK OE1 GLN B 156 NA NA B 501 1555 1555 2.39 LINK OE1 GLU B 214 NA NA B 501 1555 1555 2.33 LINK O TRP B 215 NA NA B 501 1555 1555 2.33 LINK OE2 GLU B 240 NA NA B 501 1555 1555 2.41 LINK NA NA B 501 OXT PYR B 602 1555 1555 2.41 LINK NA NA B 501 O3 PYR B 602 1555 1555 2.49 CISPEP 1 TYR A 235 PRO A 236 0 -6.53 CISPEP 2 TYR B 235 PRO B 236 0 -6.27 SITE 1 AC1 5 GLN A 156 GLU A 214 TRP A 215 GLU A 240 SITE 2 AC1 5 PYR A 601 SITE 1 AC2 5 GLN B 156 GLU B 214 TRP B 215 GLU B 240 SITE 2 AC2 5 PYR B 602 SITE 1 AC3 10 ILE A 47 TYR A 99 TYR A 100 GLN A 156 SITE 2 AC3 10 ARG A 177 GLU A 214 TRP A 215 VAL A 216 SITE 3 AC3 10 GLU A 240 NA A 500 SITE 1 AC4 9 TYR B 99 TYR B 100 GLN B 156 ARG B 177 SITE 2 AC4 9 GLU B 214 TRP B 215 VAL B 216 GLU B 240 SITE 3 AC4 9 NA B 501 SITE 1 AC5 7 PHE B 116 PHE B 310 ALA B 313 ASN B 314 SITE 2 AC5 7 TYR B 317 ARG B 338 HOH B 689 CRYST1 118.021 78.057 95.139 90.00 124.98 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008473 0.000000 0.005928 0.00000 SCALE2 0.000000 0.012811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012828 0.00000