data_2I35 # _entry.id 2I35 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2I35 pdb_00002i35 10.2210/pdb2i35/pdb RCSB RCSB039077 ? ? WWPDB D_1000039077 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2I36 '2I36 is the crystal structure of trigonal form of ground-state rhodopsin determined at 4.10 angstrom resolution' unspecified PDB 2I37 '2I37 is the crystal structure of photoactivated rhodopsin determined at 4.15 angstrom resolution' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2I35 _pdbx_database_status.recvd_initial_deposition_date 2006-08-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stenkamp, R.E.' 1 'Le Trong, I.' 2 'Lodowski, D.T.' 3 'Salom, D.' 4 'Palczewski, K.' 5 # _citation.id primary _citation.title 'Crystal structure of a photoactivated deprotonated intermediate of rhodopsin.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 103 _citation.page_first 16123 _citation.page_last 16128 _citation.year 2006 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17060607 _citation.pdbx_database_id_DOI 10.1073/pnas.0608022103 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Salom, D.' 1 ? primary 'Lodowski, D.T.' 2 ? primary 'Stenkamp, R.E.' 3 ? primary 'Trong, I.L.' 4 ? primary 'Golczak, M.' 5 ? primary 'Jastrzebska, B.' 6 ? primary 'Harris, T.' 7 ? primary 'Ballesteros, J.A.' 8 ? primary 'Palczewski, K.' 9 ? # _cell.entry_id 2I35 _cell.length_a 277.534 _cell.length_b 277.534 _cell.length_c 66.321 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2I35 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Rhodopsin 39057.492 1 ? ? ? ? 2 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 4 non-polymer syn RETINAL 284.436 1 ? ? ? ? 5 non-polymer syn 'PALMITIC ACID' 256.424 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(ACE)MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYI LLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM GVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN CMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA ; _entity_poly.pdbx_seq_one_letter_code_can ;XMNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNL AVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF TWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT TLCCGKNPLGDDEASTTVSKTETSQVAPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 MET n 1 3 ASN n 1 4 GLY n 1 5 THR n 1 6 GLU n 1 7 GLY n 1 8 PRO n 1 9 ASN n 1 10 PHE n 1 11 TYR n 1 12 VAL n 1 13 PRO n 1 14 PHE n 1 15 SER n 1 16 ASN n 1 17 LYS n 1 18 THR n 1 19 GLY n 1 20 VAL n 1 21 VAL n 1 22 ARG n 1 23 SER n 1 24 PRO n 1 25 PHE n 1 26 GLU n 1 27 ALA n 1 28 PRO n 1 29 GLN n 1 30 TYR n 1 31 TYR n 1 32 LEU n 1 33 ALA n 1 34 GLU n 1 35 PRO n 1 36 TRP n 1 37 GLN n 1 38 PHE n 1 39 SER n 1 40 MET n 1 41 LEU n 1 42 ALA n 1 43 ALA n 1 44 TYR n 1 45 MET n 1 46 PHE n 1 47 LEU n 1 48 LEU n 1 49 ILE n 1 50 MET n 1 51 LEU n 1 52 GLY n 1 53 PHE n 1 54 PRO n 1 55 ILE n 1 56 ASN n 1 57 PHE n 1 58 LEU n 1 59 THR n 1 60 LEU n 1 61 TYR n 1 62 VAL n 1 63 THR n 1 64 VAL n 1 65 GLN n 1 66 HIS n 1 67 LYS n 1 68 LYS n 1 69 LEU n 1 70 ARG n 1 71 THR n 1 72 PRO n 1 73 LEU n 1 74 ASN n 1 75 TYR n 1 76 ILE n 1 77 LEU n 1 78 LEU n 1 79 ASN n 1 80 LEU n 1 81 ALA n 1 82 VAL n 1 83 ALA n 1 84 ASP n 1 85 LEU n 1 86 PHE n 1 87 MET n 1 88 VAL n 1 89 PHE n 1 90 GLY n 1 91 GLY n 1 92 PHE n 1 93 THR n 1 94 THR n 1 95 THR n 1 96 LEU n 1 97 TYR n 1 98 THR n 1 99 SER n 1 100 LEU n 1 101 HIS n 1 102 GLY n 1 103 TYR n 1 104 PHE n 1 105 VAL n 1 106 PHE n 1 107 GLY n 1 108 PRO n 1 109 THR n 1 110 GLY n 1 111 CYS n 1 112 ASN n 1 113 LEU n 1 114 GLU n 1 115 GLY n 1 116 PHE n 1 117 PHE n 1 118 ALA n 1 119 THR n 1 120 LEU n 1 121 GLY n 1 122 GLY n 1 123 GLU n 1 124 ILE n 1 125 ALA n 1 126 LEU n 1 127 TRP n 1 128 SER n 1 129 LEU n 1 130 VAL n 1 131 VAL n 1 132 LEU n 1 133 ALA n 1 134 ILE n 1 135 GLU n 1 136 ARG n 1 137 TYR n 1 138 VAL n 1 139 VAL n 1 140 VAL n 1 141 CYS n 1 142 LYS n 1 143 PRO n 1 144 MET n 1 145 SER n 1 146 ASN n 1 147 PHE n 1 148 ARG n 1 149 PHE n 1 150 GLY n 1 151 GLU n 1 152 ASN n 1 153 HIS n 1 154 ALA n 1 155 ILE n 1 156 MET n 1 157 GLY n 1 158 VAL n 1 159 ALA n 1 160 PHE n 1 161 THR n 1 162 TRP n 1 163 VAL n 1 164 MET n 1 165 ALA n 1 166 LEU n 1 167 ALA n 1 168 CYS n 1 169 ALA n 1 170 ALA n 1 171 PRO n 1 172 PRO n 1 173 LEU n 1 174 VAL n 1 175 GLY n 1 176 TRP n 1 177 SER n 1 178 ARG n 1 179 TYR n 1 180 ILE n 1 181 PRO n 1 182 GLU n 1 183 GLY n 1 184 MET n 1 185 GLN n 1 186 CYS n 1 187 SER n 1 188 CYS n 1 189 GLY n 1 190 ILE n 1 191 ASP n 1 192 TYR n 1 193 TYR n 1 194 THR n 1 195 PRO n 1 196 HIS n 1 197 GLU n 1 198 GLU n 1 199 THR n 1 200 ASN n 1 201 ASN n 1 202 GLU n 1 203 SER n 1 204 PHE n 1 205 VAL n 1 206 ILE n 1 207 TYR n 1 208 MET n 1 209 PHE n 1 210 VAL n 1 211 VAL n 1 212 HIS n 1 213 PHE n 1 214 ILE n 1 215 ILE n 1 216 PRO n 1 217 LEU n 1 218 ILE n 1 219 VAL n 1 220 ILE n 1 221 PHE n 1 222 PHE n 1 223 CYS n 1 224 TYR n 1 225 GLY n 1 226 GLN n 1 227 LEU n 1 228 VAL n 1 229 PHE n 1 230 THR n 1 231 VAL n 1 232 LYS n 1 233 GLU n 1 234 ALA n 1 235 ALA n 1 236 ALA n 1 237 GLN n 1 238 GLN n 1 239 GLN n 1 240 GLU n 1 241 SER n 1 242 ALA n 1 243 THR n 1 244 THR n 1 245 GLN n 1 246 LYS n 1 247 ALA n 1 248 GLU n 1 249 LYS n 1 250 GLU n 1 251 VAL n 1 252 THR n 1 253 ARG n 1 254 MET n 1 255 VAL n 1 256 ILE n 1 257 ILE n 1 258 MET n 1 259 VAL n 1 260 ILE n 1 261 ALA n 1 262 PHE n 1 263 LEU n 1 264 ILE n 1 265 CYS n 1 266 TRP n 1 267 LEU n 1 268 PRO n 1 269 TYR n 1 270 ALA n 1 271 GLY n 1 272 VAL n 1 273 ALA n 1 274 PHE n 1 275 TYR n 1 276 ILE n 1 277 PHE n 1 278 THR n 1 279 HIS n 1 280 GLN n 1 281 GLY n 1 282 SER n 1 283 ASP n 1 284 PHE n 1 285 GLY n 1 286 PRO n 1 287 ILE n 1 288 PHE n 1 289 MET n 1 290 THR n 1 291 ILE n 1 292 PRO n 1 293 ALA n 1 294 PHE n 1 295 PHE n 1 296 ALA n 1 297 LYS n 1 298 THR n 1 299 SER n 1 300 ALA n 1 301 VAL n 1 302 TYR n 1 303 ASN n 1 304 PRO n 1 305 VAL n 1 306 ILE n 1 307 TYR n 1 308 ILE n 1 309 MET n 1 310 MET n 1 311 ASN n 1 312 LYS n 1 313 GLN n 1 314 PHE n 1 315 ARG n 1 316 ASN n 1 317 CYS n 1 318 MET n 1 319 VAL n 1 320 THR n 1 321 THR n 1 322 LEU n 1 323 CYS n 1 324 CYS n 1 325 GLY n 1 326 LYS n 1 327 ASN n 1 328 PRO n 1 329 LEU n 1 330 GLY n 1 331 ASP n 1 332 ASP n 1 333 GLU n 1 334 ALA n 1 335 SER n 1 336 THR n 1 337 THR n 1 338 VAL n 1 339 SER n 1 340 LYS n 1 341 THR n 1 342 GLU n 1 343 THR n 1 344 SER n 1 345 GLN n 1 346 VAL n 1 347 ALA n 1 348 PRO n 1 349 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OPSD_BOVIN _struct_ref.pdbx_db_accession P02699 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2I35 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 349 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02699 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 348 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 348 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PLM non-polymer . 'PALMITIC ACID' ? 'C16 H32 O2' 256.424 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2I35 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 6.6 _exptl_crystal.density_percent_sol 81.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 278 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details ;80 mM MES, pH 6.3, 110 mM N-nonyl-beta-D-glucoside, 200 mM zinc acetate, 16 mM beta-mercaptoethanol, 0.4% Merpol DA, 0.1% sodium azide, equilibrated against 3.0 M ammonium sulfate, VAPOR DIFFUSION, temperature 278K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2004-06-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00000 # _reflns.entry_id 2I35 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 3.8 _reflns.number_obs 8204 _reflns.number_all 8204 _reflns.percent_possible_obs 84.5 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.3 _reflns.B_iso_Wilson_estimate 227 _reflns.pdbx_redundancy 15.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.80 _reflns_shell.d_res_low 3.94 _reflns_shell.percent_possible_all 59.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.pdbx_redundancy 9.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 565 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2I35 _refine.ls_number_reflns_obs 8168 _refine.ls_number_reflns_all 8168 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 3.80 _refine.ls_percent_reflns_obs 84.53 _refine.ls_R_factor_obs 0.37542 _refine.ls_R_factor_all 0.37542 _refine.ls_R_factor_R_work 0.37333 _refine.ls_R_factor_R_free 0.41841 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 401 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.873 _refine.correlation_coeff_Fo_to_Fc_free 0.799 _refine.B_iso_mean 225.817 _refine.aniso_B[1][1] -22.65 _refine.aniso_B[2][2] -22.65 _refine.aniso_B[3][3] 33.98 _refine.aniso_B[1][2] -11.33 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1HZX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 1.013 _refine.overall_SU_ML 1.444 _refine.overall_SU_B 107.468 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2606 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 121 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2727 _refine_hist.d_res_high 3.80 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 2812 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.437 1.986 ? 3823 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.009 5.000 ? 326 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.196 23.333 ? 111 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.123 15.000 ? 411 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.560 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.126 0.200 ? 431 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 2078 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.244 0.200 ? 1648 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.316 0.200 ? 1952 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.185 0.200 ? 108 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.313 0.200 ? 49 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.194 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.800 _refine_ls_shell.d_res_low 3.897 _refine_ls_shell.number_reflns_R_work 372 _refine_ls_shell.R_factor_R_work 0.604 _refine_ls_shell.percent_reflns_obs 56.81 _refine_ls_shell.R_factor_R_free 0.393 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 372 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2I35 _struct.title 'Crystal structure of rhombohedral crystal form of ground-state rhodopsin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2I35 _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'trans-membrane protein, MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 28 ? ALA A 33 ? PRO A 27 ALA A 32 5 ? 6 HELX_P HELX_P2 2 GLU A 34 ? HIS A 66 ? GLU A 33 HIS A 65 1 ? 33 HELX_P HELX_P3 3 THR A 71 ? GLY A 90 ? THR A 70 GLY A 89 1 ? 20 HELX_P HELX_P4 4 GLY A 90 ? LEU A 100 ? GLY A 89 LEU A 99 1 ? 11 HELX_P HELX_P5 5 PHE A 106 ? CYS A 141 ? PHE A 105 CYS A 140 1 ? 36 HELX_P HELX_P6 6 ASN A 152 ? ALA A 170 ? ASN A 151 ALA A 169 1 ? 19 HELX_P HELX_P7 7 ALA A 170 ? GLY A 175 ? ALA A 169 GLY A 174 1 ? 6 HELX_P HELX_P8 8 ASN A 200 ? PHE A 213 ? ASN A 199 PHE A 212 1 ? 14 HELX_P HELX_P9 9 PHE A 213 ? ALA A 234 ? PHE A 212 ALA A 233 1 ? 22 HELX_P HELX_P10 10 SER A 241 ? HIS A 279 ? SER A 240 HIS A 278 1 ? 39 HELX_P HELX_P11 11 PRO A 286 ? LYS A 297 ? PRO A 285 LYS A 296 1 ? 12 HELX_P HELX_P12 12 THR A 298 ? ALA A 300 ? THR A 297 ALA A 299 5 ? 3 HELX_P HELX_P13 13 VAL A 301 ? ASN A 311 ? VAL A 300 ASN A 310 1 ? 11 HELX_P HELX_P14 14 ASN A 311 ? CYS A 324 ? ASN A 310 CYS A 323 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 111 SG ? ? ? 1_555 A CYS 188 SG ? ? A CYS 110 A CYS 187 1_555 ? ? ? ? ? ? ? 2.040 ? ? covale1 covale both ? A ACE 1 C ? ? ? 1_555 A MET 2 N ? ? A ACE 0 A MET 1 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale one ? A ASN 3 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 2 C NAG 1 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale3 covale one ? A ASN 16 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 15 B NAG 1 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation covale4 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.455 ? ? covale5 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.461 ? ? covale6 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.453 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 179 ? GLU A 182 ? TYR A 178 GLU A 181 A 2 SER A 187 ? ILE A 190 ? SER A 186 ILE A 189 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 182 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 181 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id SER _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 187 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id SER _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 186 # _database_PDB_matrix.entry_id 2I35 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2I35 _atom_sites.fract_transf_matrix[1][1] 0.003603 _atom_sites.fract_transf_matrix[1][2] 0.002080 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004161 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015078 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 ASN 3 2 2 ASN ASN A . n A 1 4 GLY 4 3 3 GLY GLY A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 ASN 9 8 8 ASN ASN A . n A 1 10 PHE 10 9 9 PHE PHE A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 PRO 13 12 12 PRO PRO A . n A 1 14 PHE 14 13 13 PHE PHE A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 ASN 16 15 15 ASN ASN A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 PRO 24 23 23 PRO PRO A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 GLU 26 25 25 GLU GLU A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 PRO 28 27 27 PRO PRO A . n A 1 29 GLN 29 28 28 GLN GLN A . n A 1 30 TYR 30 29 29 TYR TYR A . n A 1 31 TYR 31 30 30 TYR TYR A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 GLU 34 33 33 GLU GLU A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 TRP 36 35 35 TRP TRP A . n A 1 37 GLN 37 36 36 GLN GLN A . n A 1 38 PHE 38 37 37 PHE PHE A . n A 1 39 SER 39 38 38 SER SER A . n A 1 40 MET 40 39 39 MET MET A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 TYR 44 43 43 TYR TYR A . n A 1 45 MET 45 44 44 MET MET A . n A 1 46 PHE 46 45 45 PHE PHE A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 ILE 49 48 48 ILE ILE A . n A 1 50 MET 50 49 49 MET MET A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 PHE 53 52 52 PHE PHE A . n A 1 54 PRO 54 53 53 PRO PRO A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 ASN 56 55 55 ASN ASN A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 TYR 61 60 60 TYR TYR A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 THR 63 62 62 THR THR A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 GLN 65 64 64 GLN GLN A . n A 1 66 HIS 66 65 65 HIS HIS A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 THR 71 70 70 THR THR A . n A 1 72 PRO 72 71 71 PRO PRO A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 ASN 74 73 73 ASN ASN A . n A 1 75 TYR 75 74 74 TYR TYR A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 ASN 79 78 78 ASN ASN A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 PHE 86 85 85 PHE PHE A . n A 1 87 MET 87 86 86 MET MET A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 PHE 89 88 88 PHE PHE A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 THR 93 92 92 THR THR A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 TYR 97 96 96 TYR TYR A . n A 1 98 THR 98 97 97 THR THR A . n A 1 99 SER 99 98 98 SER SER A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 HIS 101 100 100 HIS HIS A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 TYR 103 102 102 TYR TYR A . n A 1 104 PHE 104 103 103 PHE PHE A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 PHE 106 105 105 PHE PHE A . n A 1 107 GLY 107 106 106 GLY GLY A . n A 1 108 PRO 108 107 107 PRO PRO A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 GLY 110 109 109 GLY GLY A . n A 1 111 CYS 111 110 110 CYS CYS A . n A 1 112 ASN 112 111 111 ASN ASN A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 GLY 115 114 114 GLY GLY A . n A 1 116 PHE 116 115 115 PHE PHE A . n A 1 117 PHE 117 116 116 PHE PHE A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 THR 119 118 118 THR THR A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 GLU 123 122 122 GLU GLU A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 ALA 125 124 124 ALA ALA A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 TRP 127 126 126 TRP TRP A . n A 1 128 SER 128 127 127 SER SER A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 VAL 130 129 129 VAL VAL A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 ALA 133 132 132 ALA ALA A . n A 1 134 ILE 134 133 133 ILE ILE A . n A 1 135 GLU 135 134 134 GLU GLU A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 TYR 137 136 136 TYR TYR A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 VAL 139 138 138 VAL VAL A . n A 1 140 VAL 140 139 139 VAL VAL A . n A 1 141 CYS 141 140 140 CYS CYS A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 PRO 143 142 142 PRO PRO A . n A 1 144 MET 144 143 143 MET MET A . n A 1 145 SER 145 144 144 SER SER A . n A 1 146 ASN 146 145 145 ASN ASN A . n A 1 147 PHE 147 146 146 PHE PHE A . n A 1 148 ARG 148 147 147 ARG ARG A . n A 1 149 PHE 149 148 148 PHE PHE A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 GLU 151 150 150 GLU GLU A . n A 1 152 ASN 152 151 151 ASN ASN A . n A 1 153 HIS 153 152 152 HIS HIS A . n A 1 154 ALA 154 153 153 ALA ALA A . n A 1 155 ILE 155 154 154 ILE ILE A . n A 1 156 MET 156 155 155 MET MET A . n A 1 157 GLY 157 156 156 GLY GLY A . n A 1 158 VAL 158 157 157 VAL VAL A . n A 1 159 ALA 159 158 158 ALA ALA A . n A 1 160 PHE 160 159 159 PHE PHE A . n A 1 161 THR 161 160 160 THR THR A . n A 1 162 TRP 162 161 161 TRP TRP A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 MET 164 163 163 MET MET A . n A 1 165 ALA 165 164 164 ALA ALA A . n A 1 166 LEU 166 165 165 LEU LEU A . n A 1 167 ALA 167 166 166 ALA ALA A . n A 1 168 CYS 168 167 167 CYS CYS A . n A 1 169 ALA 169 168 168 ALA ALA A . n A 1 170 ALA 170 169 169 ALA ALA A . n A 1 171 PRO 171 170 170 PRO PRO A . n A 1 172 PRO 172 171 171 PRO PRO A . n A 1 173 LEU 173 172 172 LEU LEU A . n A 1 174 VAL 174 173 173 VAL VAL A . n A 1 175 GLY 175 174 174 GLY GLY A . n A 1 176 TRP 176 175 175 TRP TRP A . n A 1 177 SER 177 176 176 SER SER A . n A 1 178 ARG 178 177 177 ARG ARG A . n A 1 179 TYR 179 178 178 TYR TYR A . n A 1 180 ILE 180 179 179 ILE ILE A . n A 1 181 PRO 181 180 180 PRO PRO A . n A 1 182 GLU 182 181 181 GLU GLU A . n A 1 183 GLY 183 182 182 GLY GLY A . n A 1 184 MET 184 183 183 MET MET A . n A 1 185 GLN 185 184 184 GLN GLN A . n A 1 186 CYS 186 185 185 CYS CYS A . n A 1 187 SER 187 186 186 SER SER A . n A 1 188 CYS 188 187 187 CYS CYS A . n A 1 189 GLY 189 188 188 GLY GLY A . n A 1 190 ILE 190 189 189 ILE ILE A . n A 1 191 ASP 191 190 190 ASP ASP A . n A 1 192 TYR 192 191 191 TYR TYR A . n A 1 193 TYR 193 192 192 TYR TYR A . n A 1 194 THR 194 193 193 THR THR A . n A 1 195 PRO 195 194 194 PRO PRO A . n A 1 196 HIS 196 195 195 HIS HIS A . n A 1 197 GLU 197 196 196 GLU GLU A . n A 1 198 GLU 198 197 197 GLU GLU A . n A 1 199 THR 199 198 198 THR THR A . n A 1 200 ASN 200 199 199 ASN ASN A . n A 1 201 ASN 201 200 200 ASN ASN A . n A 1 202 GLU 202 201 201 GLU GLU A . n A 1 203 SER 203 202 202 SER SER A . n A 1 204 PHE 204 203 203 PHE PHE A . n A 1 205 VAL 205 204 204 VAL VAL A . n A 1 206 ILE 206 205 205 ILE ILE A . n A 1 207 TYR 207 206 206 TYR TYR A . n A 1 208 MET 208 207 207 MET MET A . n A 1 209 PHE 209 208 208 PHE PHE A . n A 1 210 VAL 210 209 209 VAL VAL A . n A 1 211 VAL 211 210 210 VAL VAL A . n A 1 212 HIS 212 211 211 HIS HIS A . n A 1 213 PHE 213 212 212 PHE PHE A . n A 1 214 ILE 214 213 213 ILE ILE A . n A 1 215 ILE 215 214 214 ILE ILE A . n A 1 216 PRO 216 215 215 PRO PRO A . n A 1 217 LEU 217 216 216 LEU LEU A . n A 1 218 ILE 218 217 217 ILE ILE A . n A 1 219 VAL 219 218 218 VAL VAL A . n A 1 220 ILE 220 219 219 ILE ILE A . n A 1 221 PHE 221 220 220 PHE PHE A . n A 1 222 PHE 222 221 221 PHE PHE A . n A 1 223 CYS 223 222 222 CYS CYS A . n A 1 224 TYR 224 223 223 TYR TYR A . n A 1 225 GLY 225 224 224 GLY GLY A . n A 1 226 GLN 226 225 225 GLN GLN A . n A 1 227 LEU 227 226 226 LEU LEU A . n A 1 228 VAL 228 227 227 VAL VAL A . n A 1 229 PHE 229 228 228 PHE PHE A . n A 1 230 THR 230 229 229 THR THR A . n A 1 231 VAL 231 230 230 VAL VAL A . n A 1 232 LYS 232 231 231 LYS LYS A . n A 1 233 GLU 233 232 232 GLU GLU A . n A 1 234 ALA 234 233 233 ALA ALA A . n A 1 235 ALA 235 234 234 ALA ALA A . n A 1 236 ALA 236 235 235 ALA ALA A . n A 1 237 GLN 237 236 236 GLN GLN A . n A 1 238 GLN 238 237 237 GLN GLN A . n A 1 239 GLN 239 238 238 GLN GLN A . n A 1 240 GLU 240 239 239 GLU GLU A . n A 1 241 SER 241 240 240 SER SER A . n A 1 242 ALA 242 241 241 ALA ALA A . n A 1 243 THR 243 242 242 THR THR A . n A 1 244 THR 244 243 243 THR THR A . n A 1 245 GLN 245 244 244 GLN GLN A . n A 1 246 LYS 246 245 245 LYS LYS A . n A 1 247 ALA 247 246 246 ALA ALA A . n A 1 248 GLU 248 247 247 GLU GLU A . n A 1 249 LYS 249 248 248 LYS LYS A . n A 1 250 GLU 250 249 249 GLU GLU A . n A 1 251 VAL 251 250 250 VAL VAL A . n A 1 252 THR 252 251 251 THR THR A . n A 1 253 ARG 253 252 252 ARG ARG A . n A 1 254 MET 254 253 253 MET MET A . n A 1 255 VAL 255 254 254 VAL VAL A . n A 1 256 ILE 256 255 255 ILE ILE A . n A 1 257 ILE 257 256 256 ILE ILE A . n A 1 258 MET 258 257 257 MET MET A . n A 1 259 VAL 259 258 258 VAL VAL A . n A 1 260 ILE 260 259 259 ILE ILE A . n A 1 261 ALA 261 260 260 ALA ALA A . n A 1 262 PHE 262 261 261 PHE PHE A . n A 1 263 LEU 263 262 262 LEU LEU A . n A 1 264 ILE 264 263 263 ILE ILE A . n A 1 265 CYS 265 264 264 CYS CYS A . n A 1 266 TRP 266 265 265 TRP TRP A . n A 1 267 LEU 267 266 266 LEU LEU A . n A 1 268 PRO 268 267 267 PRO PRO A . n A 1 269 TYR 269 268 268 TYR TYR A . n A 1 270 ALA 270 269 269 ALA ALA A . n A 1 271 GLY 271 270 270 GLY GLY A . n A 1 272 VAL 272 271 271 VAL VAL A . n A 1 273 ALA 273 272 272 ALA ALA A . n A 1 274 PHE 274 273 273 PHE PHE A . n A 1 275 TYR 275 274 274 TYR TYR A . n A 1 276 ILE 276 275 275 ILE ILE A . n A 1 277 PHE 277 276 276 PHE PHE A . n A 1 278 THR 278 277 277 THR THR A . n A 1 279 HIS 279 278 278 HIS HIS A . n A 1 280 GLN 280 279 279 GLN GLN A . n A 1 281 GLY 281 280 280 GLY GLY A . n A 1 282 SER 282 281 281 SER SER A . n A 1 283 ASP 283 282 282 ASP ASP A . n A 1 284 PHE 284 283 283 PHE PHE A . n A 1 285 GLY 285 284 284 GLY GLY A . n A 1 286 PRO 286 285 285 PRO PRO A . n A 1 287 ILE 287 286 286 ILE ILE A . n A 1 288 PHE 288 287 287 PHE PHE A . n A 1 289 MET 289 288 288 MET MET A . n A 1 290 THR 290 289 289 THR THR A . n A 1 291 ILE 291 290 290 ILE ILE A . n A 1 292 PRO 292 291 291 PRO PRO A . n A 1 293 ALA 293 292 292 ALA ALA A . n A 1 294 PHE 294 293 293 PHE PHE A . n A 1 295 PHE 295 294 294 PHE PHE A . n A 1 296 ALA 296 295 295 ALA ALA A . n A 1 297 LYS 297 296 296 LYS LYS A . n A 1 298 THR 298 297 297 THR THR A . n A 1 299 SER 299 298 298 SER SER A . n A 1 300 ALA 300 299 299 ALA ALA A . n A 1 301 VAL 301 300 300 VAL VAL A . n A 1 302 TYR 302 301 301 TYR TYR A . n A 1 303 ASN 303 302 302 ASN ASN A . n A 1 304 PRO 304 303 303 PRO PRO A . n A 1 305 VAL 305 304 304 VAL VAL A . n A 1 306 ILE 306 305 305 ILE ILE A . n A 1 307 TYR 307 306 306 TYR TYR A . n A 1 308 ILE 308 307 307 ILE ILE A . n A 1 309 MET 309 308 308 MET MET A . n A 1 310 MET 310 309 309 MET MET A . n A 1 311 ASN 311 310 310 ASN ASN A . n A 1 312 LYS 312 311 311 LYS LYS A . n A 1 313 GLN 313 312 312 GLN GLN A . n A 1 314 PHE 314 313 313 PHE PHE A . n A 1 315 ARG 315 314 314 ARG ARG A . n A 1 316 ASN 316 315 315 ASN ASN A . n A 1 317 CYS 317 316 316 CYS CYS A . n A 1 318 MET 318 317 317 MET MET A . n A 1 319 VAL 319 318 318 VAL VAL A . n A 1 320 THR 320 319 319 THR THR A . n A 1 321 THR 321 320 320 THR THR A . n A 1 322 LEU 322 321 321 LEU LEU A . n A 1 323 CYS 323 322 322 CYS CYS A . n A 1 324 CYS 324 323 323 CYS CYS A . n A 1 325 GLY 325 324 324 GLY GLY A . n A 1 326 LYS 326 325 325 LYS LYS A . n A 1 327 ASN 327 326 326 ASN ASN A . n A 1 328 PRO 328 327 ? ? ? A . n A 1 329 LEU 329 328 ? ? ? A . n A 1 330 GLY 330 329 ? ? ? A . n A 1 331 ASP 331 330 330 ASP ASP A . n A 1 332 ASP 332 331 331 ASP ASP A . n A 1 333 GLU 333 332 332 GLU GLU A . n A 1 334 ALA 334 333 ? ? ? A . n A 1 335 SER 335 334 ? ? ? A . n A 1 336 THR 336 335 ? ? ? A . n A 1 337 THR 337 336 ? ? ? A . n A 1 338 VAL 338 337 ? ? ? A . n A 1 339 SER 339 338 ? ? ? A . n A 1 340 LYS 340 339 ? ? ? A . n A 1 341 THR 341 340 ? ? ? A . n A 1 342 GLU 342 341 ? ? ? A . n A 1 343 THR 343 342 ? ? ? A . n A 1 344 SER 344 343 ? ? ? A . n A 1 345 GLN 345 344 ? ? ? A . n A 1 346 VAL 346 345 ? ? ? A . n A 1 347 ALA 347 346 ? ? ? A . n A 1 348 PRO 348 347 ? ? ? A . n A 1 349 ALA 349 348 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 RET 1 1332 1332 RET RET A . E 5 PLM 1 1333 1333 PLM PLM A . F 5 PLM 1 1334 1334 PLM PLM A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 3 A ASN 2 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 16 A ASN 15 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-17 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 2 1 2023-08-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Refinement description' 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' atom_site 3 5 'Structure model' chem_comp 4 5 'Structure model' entity 5 5 'Structure model' pdbx_branch_scheme 6 5 'Structure model' pdbx_chem_comp_identifier 7 5 'Structure model' pdbx_entity_branch 8 5 'Structure model' pdbx_entity_branch_descriptor 9 5 'Structure model' pdbx_entity_branch_link 10 5 'Structure model' pdbx_entity_branch_list 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' pdbx_nonpoly_scheme 13 5 'Structure model' pdbx_struct_assembly_gen 14 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 15 5 'Structure model' struct_asym 16 5 'Structure model' struct_conn 17 5 'Structure model' struct_site 18 5 'Structure model' struct_site_gen 19 6 'Structure model' chem_comp 20 6 'Structure model' chem_comp_atom 21 6 'Structure model' chem_comp_bond 22 6 'Structure model' database_2 23 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.auth_asym_id' 2 5 'Structure model' '_atom_site.auth_seq_id' 3 5 'Structure model' '_atom_site.label_asym_id' 4 5 'Structure model' '_atom_site.label_entity_id' 5 5 'Structure model' '_chem_comp.name' 6 5 'Structure model' '_chem_comp.type' 7 5 'Structure model' '_entity.formula_weight' 8 5 'Structure model' '_entity.pdbx_description' 9 5 'Structure model' '_entity.pdbx_number_of_molecules' 10 5 'Structure model' '_entity.type' 11 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 12 5 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_asym_id' 13 5 'Structure model' '_struct_conn.pdbx_dist_value' 14 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 15 5 'Structure model' '_struct_conn.pdbx_role' 16 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 17 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 6 'Structure model' '_chem_comp.pdbx_synonyms' 31 6 'Structure model' '_database_2.pdbx_DOI' 32 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 315 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 319 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.98 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 12 ? ? -69.69 52.68 2 1 SER A 14 ? ? -59.39 107.88 3 1 ASN A 15 ? ? -68.58 30.25 4 1 ALA A 32 ? ? -169.52 -123.30 5 1 SER A 38 ? ? -68.56 7.99 6 1 VAL A 63 ? ? -44.62 -70.74 7 1 LEU A 95 ? ? -47.50 -71.58 8 1 TYR A 102 ? ? 173.60 162.30 9 1 ASN A 111 ? ? -65.36 -73.39 10 1 LEU A 112 ? ? -40.24 -73.68 11 1 LYS A 141 ? ? 28.31 60.79 12 1 SER A 144 ? ? -63.21 -179.38 13 1 ASN A 145 ? ? -43.27 104.27 14 1 SER A 176 ? ? 62.44 -178.31 15 1 GLN A 184 ? ? 65.93 -21.74 16 1 HIS A 195 ? ? 31.15 91.95 17 1 GLU A 197 ? ? -69.18 1.40 18 1 PHE A 212 ? ? -143.59 -65.80 19 1 GLN A 238 ? ? 69.43 -6.74 20 1 GLU A 239 ? ? -32.77 123.48 21 1 GLU A 249 ? ? -58.78 -8.11 22 1 HIS A 278 ? ? -104.78 55.26 23 1 GLN A 279 ? ? -57.94 98.10 24 1 ALA A 292 ? ? -73.24 -78.54 25 1 VAL A 300 ? ? -135.09 -50.50 26 1 CYS A 323 ? ? 74.59 68.22 27 1 ASP A 331 ? ? -174.37 -68.03 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 330 ? CG ? A ASP 331 CG 2 1 Y 1 A ASP 330 ? OD1 ? A ASP 331 OD1 3 1 Y 1 A ASP 330 ? OD2 ? A ASP 331 OD2 4 1 Y 1 A ASP 331 ? CG ? A ASP 332 CG 5 1 Y 1 A ASP 331 ? OD1 ? A ASP 332 OD1 6 1 Y 1 A ASP 331 ? OD2 ? A ASP 332 OD2 7 1 Y 1 A GLU 332 ? CA ? A GLU 333 CA 8 1 Y 1 A GLU 332 ? C ? A GLU 333 C 9 1 Y 1 A GLU 332 ? O ? A GLU 333 O 10 1 Y 1 A GLU 332 ? CB ? A GLU 333 CB 11 1 Y 1 A GLU 332 ? CG ? A GLU 333 CG 12 1 Y 1 A GLU 332 ? CD ? A GLU 333 CD 13 1 Y 1 A GLU 332 ? OE1 ? A GLU 333 OE1 14 1 Y 1 A GLU 332 ? OE2 ? A GLU 333 OE2 15 1 N 1 A RET 1332 ? O1 ? D RET 1 O1 16 1 N 1 A PLM 1333 ? O2 ? E PLM 1 O2 17 1 N 1 A PLM 1334 ? O2 ? F PLM 1 O2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 327 ? A PRO 328 2 1 Y 1 A LEU 328 ? A LEU 329 3 1 Y 1 A GLY 329 ? A GLY 330 4 1 Y 1 A ALA 333 ? A ALA 334 5 1 Y 1 A SER 334 ? A SER 335 6 1 Y 1 A THR 335 ? A THR 336 7 1 Y 1 A THR 336 ? A THR 337 8 1 Y 1 A VAL 337 ? A VAL 338 9 1 Y 1 A SER 338 ? A SER 339 10 1 Y 1 A LYS 339 ? A LYS 340 11 1 Y 1 A THR 340 ? A THR 341 12 1 Y 1 A GLU 341 ? A GLU 342 13 1 Y 1 A THR 342 ? A THR 343 14 1 Y 1 A SER 343 ? A SER 344 15 1 Y 1 A GLN 344 ? A GLN 345 16 1 Y 1 A VAL 345 ? A VAL 346 17 1 Y 1 A ALA 346 ? A ALA 347 18 1 Y 1 A PRO 347 ? A PRO 348 19 1 Y 1 A ALA 348 ? A ALA 349 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 BMA C1 C N R 81 BMA C2 C N S 82 BMA C3 C N S 83 BMA C4 C N S 84 BMA C5 C N R 85 BMA C6 C N N 86 BMA O1 O N N 87 BMA O2 O N N 88 BMA O3 O N N 89 BMA O4 O N N 90 BMA O5 O N N 91 BMA O6 O N N 92 BMA H1 H N N 93 BMA H2 H N N 94 BMA H3 H N N 95 BMA H4 H N N 96 BMA H5 H N N 97 BMA H61 H N N 98 BMA H62 H N N 99 BMA HO1 H N N 100 BMA HO2 H N N 101 BMA HO3 H N N 102 BMA HO4 H N N 103 BMA HO6 H N N 104 CYS N N N N 105 CYS CA C N R 106 CYS C C N N 107 CYS O O N N 108 CYS CB C N N 109 CYS SG S N N 110 CYS OXT O N N 111 CYS H H N N 112 CYS H2 H N N 113 CYS HA H N N 114 CYS HB2 H N N 115 CYS HB3 H N N 116 CYS HG H N N 117 CYS HXT H N N 118 GLN N N N N 119 GLN CA C N S 120 GLN C C N N 121 GLN O O N N 122 GLN CB C N N 123 GLN CG C N N 124 GLN CD C N N 125 GLN OE1 O N N 126 GLN NE2 N N N 127 GLN OXT O N N 128 GLN H H N N 129 GLN H2 H N N 130 GLN HA H N N 131 GLN HB2 H N N 132 GLN HB3 H N N 133 GLN HG2 H N N 134 GLN HG3 H N N 135 GLN HE21 H N N 136 GLN HE22 H N N 137 GLN HXT H N N 138 GLU N N N N 139 GLU CA C N S 140 GLU C C N N 141 GLU O O N N 142 GLU CB C N N 143 GLU CG C N N 144 GLU CD C N N 145 GLU OE1 O N N 146 GLU OE2 O N N 147 GLU OXT O N N 148 GLU H H N N 149 GLU H2 H N N 150 GLU HA H N N 151 GLU HB2 H N N 152 GLU HB3 H N N 153 GLU HG2 H N N 154 GLU HG3 H N N 155 GLU HE2 H N N 156 GLU HXT H N N 157 GLY N N N N 158 GLY CA C N N 159 GLY C C N N 160 GLY O O N N 161 GLY OXT O N N 162 GLY H H N N 163 GLY H2 H N N 164 GLY HA2 H N N 165 GLY HA3 H N N 166 GLY HXT H N N 167 HIS N N N N 168 HIS CA C N S 169 HIS C C N N 170 HIS O O N N 171 HIS CB C N N 172 HIS CG C Y N 173 HIS ND1 N Y N 174 HIS CD2 C Y N 175 HIS CE1 C Y N 176 HIS NE2 N Y N 177 HIS OXT O N N 178 HIS H H N N 179 HIS H2 H N N 180 HIS HA H N N 181 HIS HB2 H N N 182 HIS HB3 H N N 183 HIS HD1 H N N 184 HIS HD2 H N N 185 HIS HE1 H N N 186 HIS HE2 H N N 187 HIS HXT H N N 188 ILE N N N N 189 ILE CA C N S 190 ILE C C N N 191 ILE O O N N 192 ILE CB C N S 193 ILE CG1 C N N 194 ILE CG2 C N N 195 ILE CD1 C N N 196 ILE OXT O N N 197 ILE H H N N 198 ILE H2 H N N 199 ILE HA H N N 200 ILE HB H N N 201 ILE HG12 H N N 202 ILE HG13 H N N 203 ILE HG21 H N N 204 ILE HG22 H N N 205 ILE HG23 H N N 206 ILE HD11 H N N 207 ILE HD12 H N N 208 ILE HD13 H N N 209 ILE HXT H N N 210 LEU N N N N 211 LEU CA C N S 212 LEU C C N N 213 LEU O O N N 214 LEU CB C N N 215 LEU CG C N N 216 LEU CD1 C N N 217 LEU CD2 C N N 218 LEU OXT O N N 219 LEU H H N N 220 LEU H2 H N N 221 LEU HA H N N 222 LEU HB2 H N N 223 LEU HB3 H N N 224 LEU HG H N N 225 LEU HD11 H N N 226 LEU HD12 H N N 227 LEU HD13 H N N 228 LEU HD21 H N N 229 LEU HD22 H N N 230 LEU HD23 H N N 231 LEU HXT H N N 232 LYS N N N N 233 LYS CA C N S 234 LYS C C N N 235 LYS O O N N 236 LYS CB C N N 237 LYS CG C N N 238 LYS CD C N N 239 LYS CE C N N 240 LYS NZ N N N 241 LYS OXT O N N 242 LYS H H N N 243 LYS H2 H N N 244 LYS HA H N N 245 LYS HB2 H N N 246 LYS HB3 H N N 247 LYS HG2 H N N 248 LYS HG3 H N N 249 LYS HD2 H N N 250 LYS HD3 H N N 251 LYS HE2 H N N 252 LYS HE3 H N N 253 LYS HZ1 H N N 254 LYS HZ2 H N N 255 LYS HZ3 H N N 256 LYS HXT H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 NAG C1 C N R 278 NAG C2 C N R 279 NAG C3 C N R 280 NAG C4 C N S 281 NAG C5 C N R 282 NAG C6 C N N 283 NAG C7 C N N 284 NAG C8 C N N 285 NAG N2 N N N 286 NAG O1 O N N 287 NAG O3 O N N 288 NAG O4 O N N 289 NAG O5 O N N 290 NAG O6 O N N 291 NAG O7 O N N 292 NAG H1 H N N 293 NAG H2 H N N 294 NAG H3 H N N 295 NAG H4 H N N 296 NAG H5 H N N 297 NAG H61 H N N 298 NAG H62 H N N 299 NAG H81 H N N 300 NAG H82 H N N 301 NAG H83 H N N 302 NAG HN2 H N N 303 NAG HO1 H N N 304 NAG HO3 H N N 305 NAG HO4 H N N 306 NAG HO6 H N N 307 PHE N N N N 308 PHE CA C N S 309 PHE C C N N 310 PHE O O N N 311 PHE CB C N N 312 PHE CG C Y N 313 PHE CD1 C Y N 314 PHE CD2 C Y N 315 PHE CE1 C Y N 316 PHE CE2 C Y N 317 PHE CZ C Y N 318 PHE OXT O N N 319 PHE H H N N 320 PHE H2 H N N 321 PHE HA H N N 322 PHE HB2 H N N 323 PHE HB3 H N N 324 PHE HD1 H N N 325 PHE HD2 H N N 326 PHE HE1 H N N 327 PHE HE2 H N N 328 PHE HZ H N N 329 PHE HXT H N N 330 PLM C1 C N N 331 PLM O1 O N N 332 PLM O2 O N N 333 PLM C2 C N N 334 PLM C3 C N N 335 PLM C4 C N N 336 PLM C5 C N N 337 PLM C6 C N N 338 PLM C7 C N N 339 PLM C8 C N N 340 PLM C9 C N N 341 PLM CA C N N 342 PLM CB C N N 343 PLM CC C N N 344 PLM CD C N N 345 PLM CE C N N 346 PLM CF C N N 347 PLM CG C N N 348 PLM H H N N 349 PLM H21 H N N 350 PLM H22 H N N 351 PLM H31 H N N 352 PLM H32 H N N 353 PLM H41 H N N 354 PLM H42 H N N 355 PLM H51 H N N 356 PLM H52 H N N 357 PLM H61 H N N 358 PLM H62 H N N 359 PLM H71 H N N 360 PLM H72 H N N 361 PLM H81 H N N 362 PLM H82 H N N 363 PLM H91 H N N 364 PLM H92 H N N 365 PLM HA1 H N N 366 PLM HA2 H N N 367 PLM HB1 H N N 368 PLM HB2 H N N 369 PLM HC1 H N N 370 PLM HC2 H N N 371 PLM HD1 H N N 372 PLM HD2 H N N 373 PLM HE1 H N N 374 PLM HE2 H N N 375 PLM HF1 H N N 376 PLM HF2 H N N 377 PLM HG1 H N N 378 PLM HG2 H N N 379 PLM HG3 H N N 380 PRO N N N N 381 PRO CA C N S 382 PRO C C N N 383 PRO O O N N 384 PRO CB C N N 385 PRO CG C N N 386 PRO CD C N N 387 PRO OXT O N N 388 PRO H H N N 389 PRO HA H N N 390 PRO HB2 H N N 391 PRO HB3 H N N 392 PRO HG2 H N N 393 PRO HG3 H N N 394 PRO HD2 H N N 395 PRO HD3 H N N 396 PRO HXT H N N 397 RET C1 C N N 398 RET C2 C N N 399 RET C3 C N N 400 RET C4 C N N 401 RET C5 C N N 402 RET C6 C N N 403 RET C7 C N N 404 RET C8 C N N 405 RET C9 C N N 406 RET C10 C N N 407 RET C11 C N N 408 RET C12 C N N 409 RET C13 C N N 410 RET C14 C N N 411 RET C15 C N N 412 RET O1 O N N 413 RET C16 C N N 414 RET C17 C N N 415 RET C18 C N N 416 RET C19 C N N 417 RET C20 C N N 418 RET H21 H N N 419 RET H22 H N N 420 RET H31 H N N 421 RET H32 H N N 422 RET H41 H N N 423 RET H42 H N N 424 RET H7 H N N 425 RET H8 H N N 426 RET H10 H N N 427 RET H11 H N N 428 RET H12 H N N 429 RET H14 H N N 430 RET H15 H N N 431 RET H161 H N N 432 RET H162 H N N 433 RET H163 H N N 434 RET H171 H N N 435 RET H172 H N N 436 RET H173 H N N 437 RET H181 H N N 438 RET H182 H N N 439 RET H183 H N N 440 RET H191 H N N 441 RET H192 H N N 442 RET H193 H N N 443 RET H201 H N N 444 RET H202 H N N 445 RET H203 H N N 446 SER N N N N 447 SER CA C N S 448 SER C C N N 449 SER O O N N 450 SER CB C N N 451 SER OG O N N 452 SER OXT O N N 453 SER H H N N 454 SER H2 H N N 455 SER HA H N N 456 SER HB2 H N N 457 SER HB3 H N N 458 SER HG H N N 459 SER HXT H N N 460 THR N N N N 461 THR CA C N S 462 THR C C N N 463 THR O O N N 464 THR CB C N R 465 THR OG1 O N N 466 THR CG2 C N N 467 THR OXT O N N 468 THR H H N N 469 THR H2 H N N 470 THR HA H N N 471 THR HB H N N 472 THR HG1 H N N 473 THR HG21 H N N 474 THR HG22 H N N 475 THR HG23 H N N 476 THR HXT H N N 477 TRP N N N N 478 TRP CA C N S 479 TRP C C N N 480 TRP O O N N 481 TRP CB C N N 482 TRP CG C Y N 483 TRP CD1 C Y N 484 TRP CD2 C Y N 485 TRP NE1 N Y N 486 TRP CE2 C Y N 487 TRP CE3 C Y N 488 TRP CZ2 C Y N 489 TRP CZ3 C Y N 490 TRP CH2 C Y N 491 TRP OXT O N N 492 TRP H H N N 493 TRP H2 H N N 494 TRP HA H N N 495 TRP HB2 H N N 496 TRP HB3 H N N 497 TRP HD1 H N N 498 TRP HE1 H N N 499 TRP HE3 H N N 500 TRP HZ2 H N N 501 TRP HZ3 H N N 502 TRP HH2 H N N 503 TRP HXT H N N 504 TYR N N N N 505 TYR CA C N S 506 TYR C C N N 507 TYR O O N N 508 TYR CB C N N 509 TYR CG C Y N 510 TYR CD1 C Y N 511 TYR CD2 C Y N 512 TYR CE1 C Y N 513 TYR CE2 C Y N 514 TYR CZ C Y N 515 TYR OH O N N 516 TYR OXT O N N 517 TYR H H N N 518 TYR H2 H N N 519 TYR HA H N N 520 TYR HB2 H N N 521 TYR HB3 H N N 522 TYR HD1 H N N 523 TYR HD2 H N N 524 TYR HE1 H N N 525 TYR HE2 H N N 526 TYR HH H N N 527 TYR HXT H N N 528 VAL N N N N 529 VAL CA C N S 530 VAL C C N N 531 VAL O O N N 532 VAL CB C N N 533 VAL CG1 C N N 534 VAL CG2 C N N 535 VAL OXT O N N 536 VAL H H N N 537 VAL H2 H N N 538 VAL HA H N N 539 VAL HB H N N 540 VAL HG11 H N N 541 VAL HG12 H N N 542 VAL HG13 H N N 543 VAL HG21 H N N 544 VAL HG22 H N N 545 VAL HG23 H N N 546 VAL HXT H N N 547 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 BMA C1 C2 sing N N 76 BMA C1 O1 sing N N 77 BMA C1 O5 sing N N 78 BMA C1 H1 sing N N 79 BMA C2 C3 sing N N 80 BMA C2 O2 sing N N 81 BMA C2 H2 sing N N 82 BMA C3 C4 sing N N 83 BMA C3 O3 sing N N 84 BMA C3 H3 sing N N 85 BMA C4 C5 sing N N 86 BMA C4 O4 sing N N 87 BMA C4 H4 sing N N 88 BMA C5 C6 sing N N 89 BMA C5 O5 sing N N 90 BMA C5 H5 sing N N 91 BMA C6 O6 sing N N 92 BMA C6 H61 sing N N 93 BMA C6 H62 sing N N 94 BMA O1 HO1 sing N N 95 BMA O2 HO2 sing N N 96 BMA O3 HO3 sing N N 97 BMA O4 HO4 sing N N 98 BMA O6 HO6 sing N N 99 CYS N CA sing N N 100 CYS N H sing N N 101 CYS N H2 sing N N 102 CYS CA C sing N N 103 CYS CA CB sing N N 104 CYS CA HA sing N N 105 CYS C O doub N N 106 CYS C OXT sing N N 107 CYS CB SG sing N N 108 CYS CB HB2 sing N N 109 CYS CB HB3 sing N N 110 CYS SG HG sing N N 111 CYS OXT HXT sing N N 112 GLN N CA sing N N 113 GLN N H sing N N 114 GLN N H2 sing N N 115 GLN CA C sing N N 116 GLN CA CB sing N N 117 GLN CA HA sing N N 118 GLN C O doub N N 119 GLN C OXT sing N N 120 GLN CB CG sing N N 121 GLN CB HB2 sing N N 122 GLN CB HB3 sing N N 123 GLN CG CD sing N N 124 GLN CG HG2 sing N N 125 GLN CG HG3 sing N N 126 GLN CD OE1 doub N N 127 GLN CD NE2 sing N N 128 GLN NE2 HE21 sing N N 129 GLN NE2 HE22 sing N N 130 GLN OXT HXT sing N N 131 GLU N CA sing N N 132 GLU N H sing N N 133 GLU N H2 sing N N 134 GLU CA C sing N N 135 GLU CA CB sing N N 136 GLU CA HA sing N N 137 GLU C O doub N N 138 GLU C OXT sing N N 139 GLU CB CG sing N N 140 GLU CB HB2 sing N N 141 GLU CB HB3 sing N N 142 GLU CG CD sing N N 143 GLU CG HG2 sing N N 144 GLU CG HG3 sing N N 145 GLU CD OE1 doub N N 146 GLU CD OE2 sing N N 147 GLU OE2 HE2 sing N N 148 GLU OXT HXT sing N N 149 GLY N CA sing N N 150 GLY N H sing N N 151 GLY N H2 sing N N 152 GLY CA C sing N N 153 GLY CA HA2 sing N N 154 GLY CA HA3 sing N N 155 GLY C O doub N N 156 GLY C OXT sing N N 157 GLY OXT HXT sing N N 158 HIS N CA sing N N 159 HIS N H sing N N 160 HIS N H2 sing N N 161 HIS CA C sing N N 162 HIS CA CB sing N N 163 HIS CA HA sing N N 164 HIS C O doub N N 165 HIS C OXT sing N N 166 HIS CB CG sing N N 167 HIS CB HB2 sing N N 168 HIS CB HB3 sing N N 169 HIS CG ND1 sing Y N 170 HIS CG CD2 doub Y N 171 HIS ND1 CE1 doub Y N 172 HIS ND1 HD1 sing N N 173 HIS CD2 NE2 sing Y N 174 HIS CD2 HD2 sing N N 175 HIS CE1 NE2 sing Y N 176 HIS CE1 HE1 sing N N 177 HIS NE2 HE2 sing N N 178 HIS OXT HXT sing N N 179 ILE N CA sing N N 180 ILE N H sing N N 181 ILE N H2 sing N N 182 ILE CA C sing N N 183 ILE CA CB sing N N 184 ILE CA HA sing N N 185 ILE C O doub N N 186 ILE C OXT sing N N 187 ILE CB CG1 sing N N 188 ILE CB CG2 sing N N 189 ILE CB HB sing N N 190 ILE CG1 CD1 sing N N 191 ILE CG1 HG12 sing N N 192 ILE CG1 HG13 sing N N 193 ILE CG2 HG21 sing N N 194 ILE CG2 HG22 sing N N 195 ILE CG2 HG23 sing N N 196 ILE CD1 HD11 sing N N 197 ILE CD1 HD12 sing N N 198 ILE CD1 HD13 sing N N 199 ILE OXT HXT sing N N 200 LEU N CA sing N N 201 LEU N H sing N N 202 LEU N H2 sing N N 203 LEU CA C sing N N 204 LEU CA CB sing N N 205 LEU CA HA sing N N 206 LEU C O doub N N 207 LEU C OXT sing N N 208 LEU CB CG sing N N 209 LEU CB HB2 sing N N 210 LEU CB HB3 sing N N 211 LEU CG CD1 sing N N 212 LEU CG CD2 sing N N 213 LEU CG HG sing N N 214 LEU CD1 HD11 sing N N 215 LEU CD1 HD12 sing N N 216 LEU CD1 HD13 sing N N 217 LEU CD2 HD21 sing N N 218 LEU CD2 HD22 sing N N 219 LEU CD2 HD23 sing N N 220 LEU OXT HXT sing N N 221 LYS N CA sing N N 222 LYS N H sing N N 223 LYS N H2 sing N N 224 LYS CA C sing N N 225 LYS CA CB sing N N 226 LYS CA HA sing N N 227 LYS C O doub N N 228 LYS C OXT sing N N 229 LYS CB CG sing N N 230 LYS CB HB2 sing N N 231 LYS CB HB3 sing N N 232 LYS CG CD sing N N 233 LYS CG HG2 sing N N 234 LYS CG HG3 sing N N 235 LYS CD CE sing N N 236 LYS CD HD2 sing N N 237 LYS CD HD3 sing N N 238 LYS CE NZ sing N N 239 LYS CE HE2 sing N N 240 LYS CE HE3 sing N N 241 LYS NZ HZ1 sing N N 242 LYS NZ HZ2 sing N N 243 LYS NZ HZ3 sing N N 244 LYS OXT HXT sing N N 245 MET N CA sing N N 246 MET N H sing N N 247 MET N H2 sing N N 248 MET CA C sing N N 249 MET CA CB sing N N 250 MET CA HA sing N N 251 MET C O doub N N 252 MET C OXT sing N N 253 MET CB CG sing N N 254 MET CB HB2 sing N N 255 MET CB HB3 sing N N 256 MET CG SD sing N N 257 MET CG HG2 sing N N 258 MET CG HG3 sing N N 259 MET SD CE sing N N 260 MET CE HE1 sing N N 261 MET CE HE2 sing N N 262 MET CE HE3 sing N N 263 MET OXT HXT sing N N 264 NAG C1 C2 sing N N 265 NAG C1 O1 sing N N 266 NAG C1 O5 sing N N 267 NAG C1 H1 sing N N 268 NAG C2 C3 sing N N 269 NAG C2 N2 sing N N 270 NAG C2 H2 sing N N 271 NAG C3 C4 sing N N 272 NAG C3 O3 sing N N 273 NAG C3 H3 sing N N 274 NAG C4 C5 sing N N 275 NAG C4 O4 sing N N 276 NAG C4 H4 sing N N 277 NAG C5 C6 sing N N 278 NAG C5 O5 sing N N 279 NAG C5 H5 sing N N 280 NAG C6 O6 sing N N 281 NAG C6 H61 sing N N 282 NAG C6 H62 sing N N 283 NAG C7 C8 sing N N 284 NAG C7 N2 sing N N 285 NAG C7 O7 doub N N 286 NAG C8 H81 sing N N 287 NAG C8 H82 sing N N 288 NAG C8 H83 sing N N 289 NAG N2 HN2 sing N N 290 NAG O1 HO1 sing N N 291 NAG O3 HO3 sing N N 292 NAG O4 HO4 sing N N 293 NAG O6 HO6 sing N N 294 PHE N CA sing N N 295 PHE N H sing N N 296 PHE N H2 sing N N 297 PHE CA C sing N N 298 PHE CA CB sing N N 299 PHE CA HA sing N N 300 PHE C O doub N N 301 PHE C OXT sing N N 302 PHE CB CG sing N N 303 PHE CB HB2 sing N N 304 PHE CB HB3 sing N N 305 PHE CG CD1 doub Y N 306 PHE CG CD2 sing Y N 307 PHE CD1 CE1 sing Y N 308 PHE CD1 HD1 sing N N 309 PHE CD2 CE2 doub Y N 310 PHE CD2 HD2 sing N N 311 PHE CE1 CZ doub Y N 312 PHE CE1 HE1 sing N N 313 PHE CE2 CZ sing Y N 314 PHE CE2 HE2 sing N N 315 PHE CZ HZ sing N N 316 PHE OXT HXT sing N N 317 PLM C1 O1 sing N N 318 PLM C1 O2 doub N N 319 PLM C1 C2 sing N N 320 PLM O1 H sing N N 321 PLM C2 C3 sing N N 322 PLM C2 H21 sing N N 323 PLM C2 H22 sing N N 324 PLM C3 C4 sing N N 325 PLM C3 H31 sing N N 326 PLM C3 H32 sing N N 327 PLM C4 C5 sing N N 328 PLM C4 H41 sing N N 329 PLM C4 H42 sing N N 330 PLM C5 C6 sing N N 331 PLM C5 H51 sing N N 332 PLM C5 H52 sing N N 333 PLM C6 C7 sing N N 334 PLM C6 H61 sing N N 335 PLM C6 H62 sing N N 336 PLM C7 C8 sing N N 337 PLM C7 H71 sing N N 338 PLM C7 H72 sing N N 339 PLM C8 C9 sing N N 340 PLM C8 H81 sing N N 341 PLM C8 H82 sing N N 342 PLM C9 CA sing N N 343 PLM C9 H91 sing N N 344 PLM C9 H92 sing N N 345 PLM CA CB sing N N 346 PLM CA HA1 sing N N 347 PLM CA HA2 sing N N 348 PLM CB CC sing N N 349 PLM CB HB1 sing N N 350 PLM CB HB2 sing N N 351 PLM CC CD sing N N 352 PLM CC HC1 sing N N 353 PLM CC HC2 sing N N 354 PLM CD CE sing N N 355 PLM CD HD1 sing N N 356 PLM CD HD2 sing N N 357 PLM CE CF sing N N 358 PLM CE HE1 sing N N 359 PLM CE HE2 sing N N 360 PLM CF CG sing N N 361 PLM CF HF1 sing N N 362 PLM CF HF2 sing N N 363 PLM CG HG1 sing N N 364 PLM CG HG2 sing N N 365 PLM CG HG3 sing N N 366 PRO N CA sing N N 367 PRO N CD sing N N 368 PRO N H sing N N 369 PRO CA C sing N N 370 PRO CA CB sing N N 371 PRO CA HA sing N N 372 PRO C O doub N N 373 PRO C OXT sing N N 374 PRO CB CG sing N N 375 PRO CB HB2 sing N N 376 PRO CB HB3 sing N N 377 PRO CG CD sing N N 378 PRO CG HG2 sing N N 379 PRO CG HG3 sing N N 380 PRO CD HD2 sing N N 381 PRO CD HD3 sing N N 382 PRO OXT HXT sing N N 383 RET C1 C2 sing N N 384 RET C1 C6 sing N N 385 RET C1 C16 sing N N 386 RET C1 C17 sing N N 387 RET C2 C3 sing N N 388 RET C2 H21 sing N N 389 RET C2 H22 sing N N 390 RET C3 C4 sing N N 391 RET C3 H31 sing N N 392 RET C3 H32 sing N N 393 RET C4 C5 sing N N 394 RET C4 H41 sing N N 395 RET C4 H42 sing N N 396 RET C5 C6 doub N N 397 RET C5 C18 sing N N 398 RET C6 C7 sing N N 399 RET C7 C8 doub N E 400 RET C7 H7 sing N N 401 RET C8 C9 sing N N 402 RET C8 H8 sing N N 403 RET C9 C10 doub N E 404 RET C9 C19 sing N N 405 RET C10 C11 sing N N 406 RET C10 H10 sing N N 407 RET C11 C12 doub N E 408 RET C11 H11 sing N N 409 RET C12 C13 sing N N 410 RET C12 H12 sing N N 411 RET C13 C14 doub N E 412 RET C13 C20 sing N N 413 RET C14 C15 sing N N 414 RET C14 H14 sing N N 415 RET C15 O1 doub N N 416 RET C15 H15 sing N N 417 RET C16 H161 sing N N 418 RET C16 H162 sing N N 419 RET C16 H163 sing N N 420 RET C17 H171 sing N N 421 RET C17 H172 sing N N 422 RET C17 H173 sing N N 423 RET C18 H181 sing N N 424 RET C18 H182 sing N N 425 RET C18 H183 sing N N 426 RET C19 H191 sing N N 427 RET C19 H192 sing N N 428 RET C19 H193 sing N N 429 RET C20 H201 sing N N 430 RET C20 H202 sing N N 431 RET C20 H203 sing N N 432 SER N CA sing N N 433 SER N H sing N N 434 SER N H2 sing N N 435 SER CA C sing N N 436 SER CA CB sing N N 437 SER CA HA sing N N 438 SER C O doub N N 439 SER C OXT sing N N 440 SER CB OG sing N N 441 SER CB HB2 sing N N 442 SER CB HB3 sing N N 443 SER OG HG sing N N 444 SER OXT HXT sing N N 445 THR N CA sing N N 446 THR N H sing N N 447 THR N H2 sing N N 448 THR CA C sing N N 449 THR CA CB sing N N 450 THR CA HA sing N N 451 THR C O doub N N 452 THR C OXT sing N N 453 THR CB OG1 sing N N 454 THR CB CG2 sing N N 455 THR CB HB sing N N 456 THR OG1 HG1 sing N N 457 THR CG2 HG21 sing N N 458 THR CG2 HG22 sing N N 459 THR CG2 HG23 sing N N 460 THR OXT HXT sing N N 461 TRP N CA sing N N 462 TRP N H sing N N 463 TRP N H2 sing N N 464 TRP CA C sing N N 465 TRP CA CB sing N N 466 TRP CA HA sing N N 467 TRP C O doub N N 468 TRP C OXT sing N N 469 TRP CB CG sing N N 470 TRP CB HB2 sing N N 471 TRP CB HB3 sing N N 472 TRP CG CD1 doub Y N 473 TRP CG CD2 sing Y N 474 TRP CD1 NE1 sing Y N 475 TRP CD1 HD1 sing N N 476 TRP CD2 CE2 doub Y N 477 TRP CD2 CE3 sing Y N 478 TRP NE1 CE2 sing Y N 479 TRP NE1 HE1 sing N N 480 TRP CE2 CZ2 sing Y N 481 TRP CE3 CZ3 doub Y N 482 TRP CE3 HE3 sing N N 483 TRP CZ2 CH2 doub Y N 484 TRP CZ2 HZ2 sing N N 485 TRP CZ3 CH2 sing Y N 486 TRP CZ3 HZ3 sing N N 487 TRP CH2 HH2 sing N N 488 TRP OXT HXT sing N N 489 TYR N CA sing N N 490 TYR N H sing N N 491 TYR N H2 sing N N 492 TYR CA C sing N N 493 TYR CA CB sing N N 494 TYR CA HA sing N N 495 TYR C O doub N N 496 TYR C OXT sing N N 497 TYR CB CG sing N N 498 TYR CB HB2 sing N N 499 TYR CB HB3 sing N N 500 TYR CG CD1 doub Y N 501 TYR CG CD2 sing Y N 502 TYR CD1 CE1 sing Y N 503 TYR CD1 HD1 sing N N 504 TYR CD2 CE2 doub Y N 505 TYR CD2 HD2 sing N N 506 TYR CE1 CZ doub Y N 507 TYR CE1 HE1 sing N N 508 TYR CE2 CZ sing Y N 509 TYR CE2 HE2 sing N N 510 TYR CZ OH sing N N 511 TYR OH HH sing N N 512 TYR OXT HXT sing N N 513 VAL N CA sing N N 514 VAL N H sing N N 515 VAL N H2 sing N N 516 VAL CA C sing N N 517 VAL CA CB sing N N 518 VAL CA HA sing N N 519 VAL C O doub N N 520 VAL C OXT sing N N 521 VAL CB CG1 sing N N 522 VAL CB CG2 sing N N 523 VAL CB HB sing N N 524 VAL CG1 HG11 sing N N 525 VAL CG1 HG12 sing N N 526 VAL CG1 HG13 sing N N 527 VAL CG2 HG21 sing N N 528 VAL CG2 HG22 sing N N 529 VAL CG2 HG23 sing N N 530 VAL OXT HXT sing N N 531 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 1335 n B 2 NAG 2 B NAG 2 A NAG 1336 n B 2 BMA 3 B BMA 3 A BMA 1337 n C 3 NAG 1 C NAG 1 A NAG 1338 n C 3 NAG 2 C NAG 2 A NAG 1339 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? 4 3 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 3 NAG 1 n 3 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 RETINAL RET 5 'PALMITIC ACID' PLM # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HZX _pdbx_initial_refinement_model.details 'PDB entry 1HZX' #