HEADER HYDROLASE 18-AUG-06 2I3E TITLE SOLUTION STRUCTURE OF CATALYTIC DOMAIN OF GOLDFISH RICH PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: G-RICH; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.4.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARASSIUS AURATUS; SOURCE 3 ORGANISM_COMMON: GOLDFISH; SOURCE 4 ORGANISM_TAXID: 7957; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS RICH PROTEIN, CNP, 2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE, KEYWDS 2 NERVE REGENERATION, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.Y.DENISOV,G.KOZLOV,K.GEHRING REVDAT 4 09-MAR-22 2I3E 1 REMARK SEQADV REVDAT 3 24-FEB-09 2I3E 1 VERSN REVDAT 2 17-APR-07 2I3E 1 JRNL REVDAT 1 06-MAR-07 2I3E 0 JRNL AUTH G.KOZLOV,A.Y.DENISOV,E.POMERANTSEVA,M.GRAVEL,P.E.BRAUN, JRNL AUTH 2 K.GEHRING JRNL TITL SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF RICH PROTEIN JRNL TITL 2 FROM GOLDFISH. JRNL REF FEBS J. V. 274 1600 2007 JRNL REFN ISSN 1742-464X JRNL PMID 17480208 JRNL DOI 10.1111/J.1742-4658.2007.05707.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE WAS REFINED BY USING STANDARD REMARK 3 PROTOCOL IN CNS WITH RESTRAINTS FROM NOE DISTANCES, BACKBONE REMARK 3 TORSION ANGLES AND HYDROGEN BONDS REMARK 4 REMARK 4 2I3E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039086. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 307 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM RICH PROTEIN U-15N,13C; 50 REMARK 210 MM MES BUFFER, 90% H2O, 10% D2O; REMARK 210 1 MM RICH PROTEIN U-15N,13C AND REMARK 210 90%-2D; 50 MM MES BUFFER, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-EDITED NOESY; 13C-EDITED REMARK 210 NOESY; HNCA; HNCACB; CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.0, XEASY 1.3.13, ARIA REMARK 210 1.1, TALOS 2003 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY AND THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING MULTI-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -57.91 -132.88 REMARK 500 1 MET A 4 80.55 -67.26 REMARK 500 1 ALA A 50 75.37 -171.13 REMARK 500 1 GLU A 51 -85.59 -148.68 REMARK 500 1 LYS A 52 -63.74 171.94 REMARK 500 1 GLU A 53 55.12 -150.48 REMARK 500 1 LEU A 64 -80.49 -64.61 REMARK 500 1 GLN A 65 81.38 -64.91 REMARK 500 1 THR A 70 -75.77 -131.62 REMARK 500 1 ASP A 74 -79.93 62.97 REMARK 500 1 TYR A 75 -82.53 -178.34 REMARK 500 1 ALA A 78 79.95 -102.92 REMARK 500 1 LEU A 118 -171.80 -60.47 REMARK 500 1 PRO A 147 168.75 -45.32 REMARK 500 1 LYS A 182 -81.32 -68.27 REMARK 500 1 ARG A 201 107.33 55.25 REMARK 500 1 LEU A 206 87.58 -68.10 REMARK 500 2 LEU A 8 -48.98 -131.43 REMARK 500 2 GLU A 49 69.47 62.56 REMARK 500 2 ALA A 50 40.37 -166.76 REMARK 500 2 GLU A 51 54.94 -148.83 REMARK 500 2 GLU A 53 73.08 -175.57 REMARK 500 2 VAL A 54 50.92 -147.85 REMARK 500 2 PHE A 60 -174.94 46.38 REMARK 500 2 LEU A 64 -59.42 -179.64 REMARK 500 2 THR A 70 -141.45 -118.27 REMARK 500 2 ASP A 74 -78.54 64.03 REMARK 500 2 TYR A 75 -74.29 -178.84 REMARK 500 2 GLU A 79 -64.03 -105.74 REMARK 500 2 LYS A 96 172.40 -59.04 REMARK 500 2 PRO A 109 62.99 -66.16 REMARK 500 2 ARG A 110 -53.31 179.49 REMARK 500 2 LEU A 118 -177.34 -61.02 REMARK 500 2 LEU A 156 -65.16 -129.40 REMARK 500 2 LYS A 182 40.93 -93.89 REMARK 500 2 GLU A 183 54.94 -118.92 REMARK 500 2 ARG A 201 105.40 53.88 REMARK 500 2 PRO A 209 158.78 -48.06 REMARK 500 2 SER A 220 -74.30 -113.53 REMARK 500 2 GLU A 221 123.32 63.33 REMARK 500 3 SER A 2 137.53 63.70 REMARK 500 3 HIS A 3 -56.11 -154.64 REMARK 500 3 MET A 4 119.67 -161.84 REMARK 500 3 GLU A 5 31.40 -163.63 REMARK 500 3 PHE A 9 136.33 177.43 REMARK 500 3 GLU A 49 39.71 176.55 REMARK 500 3 ALA A 50 76.90 70.07 REMARK 500 3 LYS A 52 -49.18 -169.89 REMARK 500 3 VAL A 54 27.83 46.00 REMARK 500 3 ASP A 55 86.90 179.89 REMARK 500 REMARK 500 THIS ENTRY HAS 181 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WOJ RELATED DB: PDB REMARK 900 CNPASE DBREF 2I3E A 5 222 UNP Q90306 Q90306_CARAU 172 389 SEQADV 2I3E GLY A 1 UNP Q90306 CLONING ARTIFACT SEQADV 2I3E SER A 2 UNP Q90306 CLONING ARTIFACT SEQADV 2I3E HIS A 3 UNP Q90306 CLONING ARTIFACT SEQADV 2I3E MET A 4 UNP Q90306 CLONING ARTIFACT SEQRES 1 A 222 GLY SER HIS MET GLU LEU PRO LEU PHE PHE GLY TRP PHE SEQRES 2 A 222 LEU LEU PRO GLU GLU GLU GLU ARG ILE LYS CYS ALA THR SEQRES 3 A 222 MET ASP PHE LEU LYS THR LEU ASP THR LEU GLU ALA PHE SEQRES 4 A 222 LYS GLU HIS ILE SER GLU PHE THR GLY GLU ALA GLU LYS SEQRES 5 A 222 GLU VAL ASP LEU GLU GLN TYR PHE GLN ASN PRO LEU GLN SEQRES 6 A 222 LEU HIS CYS THR THR LYS PHE CYS ASP TYR GLY LYS ALA SEQRES 7 A 222 GLU GLY ALA LYS GLU TYR ALA GLU LEU GLN VAL VAL LYS SEQRES 8 A 222 GLU SER LEU THR LYS SER TYR GLU LEU SER VAL THR ALA SEQRES 9 A 222 LEU ILE VAL THR PRO ARG THR PHE GLY ALA ARG VAL ALA SEQRES 10 A 222 LEU THR GLU ALA GLN VAL LYS LEU TRP PRO GLU GLY ALA SEQRES 11 A 222 ASP LYS GLU GLY VAL ALA PRO ALA LEU LEU PRO SER VAL SEQRES 12 A 222 GLU ALA LEU PRO ALA GLY SER ARG ALA HIS VAL THR LEU SEQRES 13 A 222 GLY CYS SER ALA GLY VAL GLU THR VAL GLN THR GLY LEU SEQRES 14 A 222 ASP LEU LEU GLU ILE LEU ALA LEU GLN LYS GLU GLY LYS SEQRES 15 A 222 GLU GLY THR GLN VAL GLU MET ASP LEU GLY THR LEU THR SEQRES 16 A 222 TYR LEU SER GLU GLY ARG TRP PHE LEU ALA LEU ARG GLU SEQRES 17 A 222 PRO ILE ASN ALA ASP THR THR PHE THR SER PHE SER GLU SEQRES 18 A 222 ASP HELIX 1 1 LEU A 15 LEU A 36 1 22 HELIX 2 2 LEU A 36 HIS A 42 1 7 HELIX 3 3 HIS A 42 GLY A 48 1 7 HELIX 4 4 ASP A 55 PHE A 60 1 6 HELIX 5 5 ALA A 78 GLU A 86 1 9 HELIX 6 6 LEU A 87 SER A 93 1 7 HELIX 7 7 THR A 119 LEU A 125 1 7 HELIX 8 8 GLU A 128 GLU A 133 5 6 HELIX 9 9 ALA A 136 ALA A 138 5 3 HELIX 10 10 LEU A 139 GLU A 144 1 6 HELIX 11 11 THR A 164 GLU A 180 1 17 SHEET 1 A 9 THR A 185 GLU A 188 0 SHEET 2 A 9 GLY A 192 TYR A 196 -1 O LEU A 194 N VAL A 187 SHEET 3 A 9 TRP A 202 PHE A 219 -1 O ALA A 205 N THR A 193 SHEET 4 A 9 SER A 97 VAL A 107 -1 N LEU A 100 O ALA A 212 SHEET 5 A 9 THR A 111 ALA A 117 -1 O ALA A 117 N SER A 101 SHEET 6 A 9 ALA A 152 CYS A 158 -1 O ALA A 152 N VAL A 116 SHEET 7 A 9 HIS A 67 PHE A 72 -1 N HIS A 67 O THR A 155 SHEET 8 A 9 PHE A 9 LEU A 14 -1 N PHE A 10 O THR A 70 SHEET 9 A 9 TRP A 202 PHE A 219 -1 O THR A 217 N GLY A 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1