HEADER OXIDOREDUCTASE 18-AUG-06 2I3G TITLE CRYSTAL STRUCTURE OF N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE TITLE 2 (RV1652) FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH NADP+. COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AGPR, N- ACETYL-GLUTAMATE SEMIALDEHYDE DEHYDROGENASE, NAGSA COMPND 5 DEHYDROGENASE; COMPND 6 EC: 1.2.1.38; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ARGC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST15-1652 KEYWDS DIMER INTERFACE BETA SANDWICH, DIMER, ROSSMANN FOLD, STRUCTURAL KEYWDS 2 GENOMICS, MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS PROJECT, KEYWDS 3 XMTB, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.T.CHERNEY,M.M.CHERNEY,C.R.GAREN,F.MORAIDIN,M.N.G.JAMES, AUTHOR 2 MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS PROJECT (XMTB),TB AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 8 30-AUG-23 2I3G 1 REMARK REVDAT 7 13-JUL-11 2I3G 1 VERSN REVDAT 6 24-FEB-09 2I3G 1 VERSN REVDAT 5 10-APR-07 2I3G 1 REMARK REVDAT 4 03-APR-07 2I3G 1 JRNL REVDAT 3 26-SEP-06 2I3G 3 ATOM REMARK REVDAT 2 12-SEP-06 2I3G 3 ATOM REVDAT 1 05-SEP-06 2I3G 0 JRNL AUTH L.T.CHERNEY,M.M.CHERNEY,C.R.GAREN,C.NIU,F.MORADIAN, JRNL AUTH 2 M.N.G.JAMES JRNL TITL CRYSTAL STRUCTURE OF N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE JRNL TITL 2 REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH JRNL TITL 3 NADP(+). JRNL REF J.MOL.BIOL. V. 367 1357 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17316682 JRNL DOI 10.1016/J.JMB.2007.01.033 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 56669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2956 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 688 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5309 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7287 ; 1.495 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 690 ; 5.847 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;34.704 ;22.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;12.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;17.861 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 863 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4016 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2540 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3585 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 582 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 135 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3509 ; 0.782 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5505 ; 1.298 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2005 ; 2.004 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1782 ; 3.219 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : SINGLE WAVELENGTH REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59626 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VKN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 10000, 0.1 M BIS-TRIS PH 5.5, REMARK 280 0.1 M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.72800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.10700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.72800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.10700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE BIOLOGICAL UNIT HAS BEEN CORRECTED BY TRANSLATING REMARK 300 CHAIN A WITH SYMMETRY OPERATOR -X,Y,-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 GLN A 5 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 GLN B 5 REMARK 465 VAL B 6 REMARK 465 ALA B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 116.11 -162.33 REMARK 500 ALA A 48 -97.10 -103.52 REMARK 500 LEU A 62 58.35 -100.83 REMARK 500 ALA A 87 57.89 -113.97 REMARK 500 VAL A 322 -88.12 -102.39 REMARK 500 THR A 325 -91.55 -150.47 REMARK 500 ALA B 47 -149.28 -157.99 REMARK 500 ALA B 48 -104.71 -117.12 REMARK 500 LEU B 62 59.06 -97.89 REMARK 500 ALA B 87 57.66 -117.56 REMARK 500 VAL B 322 -86.09 -105.06 REMARK 500 THR B 325 -88.81 -149.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB B 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV1652 RELATED DB: TARGETDB DBREF 2I3G A 1 352 UNP P63562 ARGC_MYCTU 1 352 DBREF 2I3G B 1 352 UNP P63562 ARGC_MYCTU 1 352 SEQRES 1 A 352 MET GLN ASN ARG GLN VAL ALA ASN ALA THR LYS VAL ALA SEQRES 2 A 352 VAL ALA GLY ALA SER GLY TYR ALA GLY GLY GLU ILE LEU SEQRES 3 A 352 ARG LEU LEU LEU GLY HIS PRO ALA TYR ALA ASP GLY ARG SEQRES 4 A 352 LEU ARG ILE GLY ALA LEU THR ALA ALA THR SER ALA GLY SEQRES 5 A 352 SER THR LEU GLY GLU HIS HIS PRO HIS LEU THR PRO LEU SEQRES 6 A 352 ALA HIS ARG VAL VAL GLU PRO THR GLU ALA ALA VAL LEU SEQRES 7 A 352 GLY GLY HIS ASP ALA VAL PHE LEU ALA LEU PRO HIS GLY SEQRES 8 A 352 HIS SER ALA VAL LEU ALA GLN GLN LEU SER PRO GLU THR SEQRES 9 A 352 LEU ILE ILE ASP CYS GLY ALA ASP PHE ARG LEU THR ASP SEQRES 10 A 352 ALA ALA VAL TRP GLU ARG PHE TYR GLY SER SER HIS ALA SEQRES 11 A 352 GLY SER TRP PRO TYR GLY LEU PRO GLU LEU PRO GLY ALA SEQRES 12 A 352 ARG ASP GLN LEU ARG GLY THR ARG ARG ILE ALA VAL PRO SEQRES 13 A 352 GLY CYS TYR PRO THR ALA ALA LEU LEU ALA LEU PHE PRO SEQRES 14 A 352 ALA LEU ALA ALA ASP LEU ILE GLU PRO ALA VAL THR VAL SEQRES 15 A 352 VAL ALA VAL SER GLY THR SER GLY ALA GLY ARG ALA ALA SEQRES 16 A 352 THR THR ASP LEU LEU GLY ALA GLU VAL ILE GLY SER ALA SEQRES 17 A 352 ARG ALA TYR ASN ILE ALA GLY VAL HIS ARG HIS THR PRO SEQRES 18 A 352 GLU ILE ALA GLN GLY LEU ARG ALA VAL THR ASP ARG ASP SEQRES 19 A 352 VAL SER VAL SER PHE THR PRO VAL LEU ILE PRO ALA SER SEQRES 20 A 352 ARG GLY ILE LEU ALA THR CYS THR ALA ARG THR ARG SER SEQRES 21 A 352 PRO LEU SER GLN LEU ARG ALA ALA TYR GLU LYS ALA TYR SEQRES 22 A 352 HIS ALA GLU PRO PHE ILE TYR LEU MET PRO GLU GLY GLN SEQRES 23 A 352 LEU PRO ARG THR GLY ALA VAL ILE GLY SER ASN ALA ALA SEQRES 24 A 352 HIS ILE ALA VAL ALA VAL ASP GLU ASP ALA GLN THR PHE SEQRES 25 A 352 VAL ALA ILE ALA ALA ILE ASP ASN LEU VAL LYS GLY THR SEQRES 26 A 352 ALA GLY ALA ALA VAL GLN SER MET ASN LEU ALA LEU GLY SEQRES 27 A 352 TRP PRO GLU THR ASP GLY LEU SER VAL VAL GLY VAL ALA SEQRES 28 A 352 PRO SEQRES 1 B 352 MET GLN ASN ARG GLN VAL ALA ASN ALA THR LYS VAL ALA SEQRES 2 B 352 VAL ALA GLY ALA SER GLY TYR ALA GLY GLY GLU ILE LEU SEQRES 3 B 352 ARG LEU LEU LEU GLY HIS PRO ALA TYR ALA ASP GLY ARG SEQRES 4 B 352 LEU ARG ILE GLY ALA LEU THR ALA ALA THR SER ALA GLY SEQRES 5 B 352 SER THR LEU GLY GLU HIS HIS PRO HIS LEU THR PRO LEU SEQRES 6 B 352 ALA HIS ARG VAL VAL GLU PRO THR GLU ALA ALA VAL LEU SEQRES 7 B 352 GLY GLY HIS ASP ALA VAL PHE LEU ALA LEU PRO HIS GLY SEQRES 8 B 352 HIS SER ALA VAL LEU ALA GLN GLN LEU SER PRO GLU THR SEQRES 9 B 352 LEU ILE ILE ASP CYS GLY ALA ASP PHE ARG LEU THR ASP SEQRES 10 B 352 ALA ALA VAL TRP GLU ARG PHE TYR GLY SER SER HIS ALA SEQRES 11 B 352 GLY SER TRP PRO TYR GLY LEU PRO GLU LEU PRO GLY ALA SEQRES 12 B 352 ARG ASP GLN LEU ARG GLY THR ARG ARG ILE ALA VAL PRO SEQRES 13 B 352 GLY CYS TYR PRO THR ALA ALA LEU LEU ALA LEU PHE PRO SEQRES 14 B 352 ALA LEU ALA ALA ASP LEU ILE GLU PRO ALA VAL THR VAL SEQRES 15 B 352 VAL ALA VAL SER GLY THR SER GLY ALA GLY ARG ALA ALA SEQRES 16 B 352 THR THR ASP LEU LEU GLY ALA GLU VAL ILE GLY SER ALA SEQRES 17 B 352 ARG ALA TYR ASN ILE ALA GLY VAL HIS ARG HIS THR PRO SEQRES 18 B 352 GLU ILE ALA GLN GLY LEU ARG ALA VAL THR ASP ARG ASP SEQRES 19 B 352 VAL SER VAL SER PHE THR PRO VAL LEU ILE PRO ALA SER SEQRES 20 B 352 ARG GLY ILE LEU ALA THR CYS THR ALA ARG THR ARG SER SEQRES 21 B 352 PRO LEU SER GLN LEU ARG ALA ALA TYR GLU LYS ALA TYR SEQRES 22 B 352 HIS ALA GLU PRO PHE ILE TYR LEU MET PRO GLU GLY GLN SEQRES 23 B 352 LEU PRO ARG THR GLY ALA VAL ILE GLY SER ASN ALA ALA SEQRES 24 B 352 HIS ILE ALA VAL ALA VAL ASP GLU ASP ALA GLN THR PHE SEQRES 25 B 352 VAL ALA ILE ALA ALA ILE ASP ASN LEU VAL LYS GLY THR SEQRES 26 B 352 ALA GLY ALA ALA VAL GLN SER MET ASN LEU ALA LEU GLY SEQRES 27 B 352 TRP PRO GLU THR ASP GLY LEU SER VAL VAL GLY VAL ALA SEQRES 28 B 352 PRO HET NAP A 500 48 HET BTB A 600 14 HET NAP B 500 48 HET BTB B 700 14 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN BTB BIS-TRIS BUFFER FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 BTB 2(C8 H19 N O5) FORMUL 7 HOH *688(H2 O) HELIX 1 1 GLY A 19 HIS A 32 1 14 HELIX 2 2 HIS A 32 ASP A 37 1 6 HELIX 3 3 THR A 54 HIS A 58 5 5 HELIX 4 4 LEU A 62 ALA A 66 5 5 HELIX 5 5 GLU A 74 GLY A 79 1 6 HELIX 6 6 HIS A 92 LEU A 100 1 9 HELIX 7 7 ASP A 117 GLY A 126 1 10 HELIX 8 8 GLY A 142 ARG A 148 1 7 HELIX 9 9 GLY A 157 ALA A 173 1 17 HELIX 10 10 THR A 188 GLY A 192 5 5 HELIX 11 11 THR A 196 LEU A 199 5 4 HELIX 12 12 LEU A 200 ILE A 205 1 6 HELIX 13 13 HIS A 219 ALA A 229 1 11 HELIX 14 14 PRO A 261 HIS A 274 1 14 HELIX 15 15 ARG A 289 VAL A 293 5 5 HELIX 16 16 THR A 325 GLY A 338 1 14 HELIX 17 17 GLY B 19 HIS B 32 1 14 HELIX 18 18 HIS B 32 ASP B 37 1 6 HELIX 19 19 THR B 54 HIS B 58 5 5 HELIX 20 20 LEU B 62 ALA B 66 5 5 HELIX 21 21 GLU B 74 GLY B 79 1 6 HELIX 22 22 HIS B 92 LEU B 100 1 9 HELIX 23 23 ASP B 117 GLY B 126 1 10 HELIX 24 24 GLY B 142 ARG B 148 1 7 HELIX 25 25 GLY B 157 ALA B 173 1 17 HELIX 26 26 THR B 188 GLY B 192 5 5 HELIX 27 27 THR B 196 LEU B 199 5 4 HELIX 28 28 LEU B 200 ILE B 205 1 6 HELIX 29 29 ARG B 218 ALA B 229 1 12 HELIX 30 30 PRO B 261 HIS B 274 1 14 HELIX 31 31 ARG B 289 VAL B 293 5 5 HELIX 32 32 THR B 325 GLY B 338 1 14 SHEET 1 A 6 GLU A 71 PRO A 72 0 SHEET 2 A 6 LEU A 40 ALA A 47 1 N LEU A 45 O GLU A 71 SHEET 3 A 6 THR A 10 ALA A 15 1 N VAL A 12 O GLY A 43 SHEET 4 A 6 ALA A 83 LEU A 86 1 O PHE A 85 N ALA A 15 SHEET 5 A 6 LEU A 105 ASP A 108 1 O ILE A 107 N LEU A 86 SHEET 6 A 6 ARG A 152 ALA A 154 1 O ILE A 153 N ASP A 108 SHEET 1 B 7 ARG A 209 ALA A 210 0 SHEET 2 B 7 SER A 236 LEU A 243 -1 O LEU A 243 N ARG A 209 SHEET 3 B 7 ALA A 179 SER A 186 1 N VAL A 182 O SER A 238 SHEET 4 B 7 ILE A 250 ARG A 257 -1 O THR A 255 N THR A 181 SHEET 5 B 7 THR A 311 ILE A 318 -1 O PHE A 312 N ALA A 256 SHEET 6 B 7 ALA A 299 ASP A 306 -1 N ASP A 306 O THR A 311 SHEET 7 B 7 ILE A 279 LEU A 281 1 N TYR A 280 O ALA A 299 SHEET 1 C 6 GLU B 71 PRO B 72 0 SHEET 2 C 6 LEU B 40 ALA B 47 1 N LEU B 45 O GLU B 71 SHEET 3 C 6 THR B 10 ALA B 15 1 N VAL B 12 O GLY B 43 SHEET 4 C 6 ALA B 83 LEU B 86 1 O PHE B 85 N ALA B 15 SHEET 5 C 6 LEU B 105 ASP B 108 1 O LEU B 105 N VAL B 84 SHEET 6 C 6 ARG B 152 ALA B 154 1 O ILE B 153 N ASP B 108 SHEET 1 D 7 ARG B 209 ALA B 210 0 SHEET 2 D 7 SER B 236 LEU B 243 -1 O LEU B 243 N ARG B 209 SHEET 3 D 7 ALA B 179 SER B 186 1 N VAL B 182 O SER B 238 SHEET 4 D 7 ILE B 250 ARG B 257 -1 O THR B 255 N THR B 181 SHEET 5 D 7 THR B 311 ILE B 318 -1 O PHE B 312 N ALA B 256 SHEET 6 D 7 ALA B 299 ASP B 306 -1 N ASP B 306 O THR B 311 SHEET 7 D 7 ILE B 279 LEU B 281 1 N TYR B 280 O ALA B 299 CISPEP 1 ALA A 351 PRO A 352 0 -2.76 CISPEP 2 ASN B 8 ALA B 9 0 -2.12 CISPEP 3 ALA B 351 PRO B 352 0 -4.97 SITE 1 AC1 33 GLY A 16 SER A 18 GLY A 19 TYR A 20 SITE 2 AC1 33 ALA A 21 ALA A 47 ALA A 48 THR A 49 SITE 3 AC1 33 SER A 50 THR A 73 ALA A 87 LEU A 88 SITE 4 AC1 33 PRO A 89 HIS A 90 HIS A 92 CYS A 109 SITE 5 AC1 33 GLY A 110 SER A 189 GLY A 190 GLY A 192 SITE 6 AC1 33 ARG A 193 ALA A 194 ASN A 320 LEU A 321 SITE 7 AC1 33 THR A 325 HOH A 755 HOH A 839 HOH A 840 SITE 8 AC1 33 HOH A 841 HOH A 844 HOH A 864 HOH A 865 SITE 9 AC1 33 HOH A 870 SITE 1 AC2 35 GLY B 16 SER B 18 GLY B 19 TYR B 20 SITE 2 AC2 35 ALA B 21 ALA B 47 ALA B 48 THR B 49 SITE 3 AC2 35 SER B 50 THR B 73 ALA B 87 LEU B 88 SITE 4 AC2 35 PRO B 89 HIS B 92 CYS B 109 GLY B 110 SITE 5 AC2 35 SER B 189 GLY B 190 GLY B 192 ARG B 193 SITE 6 AC2 35 ALA B 194 ASN B 320 LEU B 321 THR B 325 SITE 7 AC2 35 HOH B 778 HOH B 842 HOH B 878 HOH B 880 SITE 8 AC2 35 HOH B 881 HOH B 882 HOH B 883 HOH B 884 SITE 9 AC2 35 HOH B 888 HOH B 907 HOH B 910 SITE 1 AC3 8 HIS A 32 ALA A 34 ASP A 37 ARG A 39 SITE 2 AC3 8 TRP A 339 PRO A 340 ASP A 343 HOH A 921 SITE 1 AC4 8 HIS B 32 ALA B 34 ASP B 37 ARG B 39 SITE 2 AC4 8 TRP B 339 PRO B 340 ASP B 343 HOH B 972 CRYST1 141.456 78.214 88.034 90.00 127.46 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007069 0.000000 0.005417 0.00000 SCALE2 0.000000 0.012785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014310 0.00000