data_2I6D # _entry.id 2I6D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2I6D RCSB RCSB039193 WWPDB D_1000039193 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC80860 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2I6D _pdbx_database_status.recvd_initial_deposition_date 2006-08-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Mussar, K.E.' 2 'Li, H.' 3 'Moy, S.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Mussar, K.E.' 2 primary 'Li, H.' 3 primary 'Moy, S.' 4 primary 'Joachimiak, A.' 5 primary 'Midwest Center for Structural Genomics (MCSG)' 6 # _cell.entry_id 2I6D _cell.length_a 41.921 _cell.length_b 107.119 _cell.length_c 120.352 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2I6D _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA methyltransferase, TrmH family' 28387.660 1 2.1.1.- ? ? ? 2 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 3 water nat water 18.015 315 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)LSANQIKFLRSLRERKYRLREQAFAVEGPKLVGE(MSE)LPFYRCR(MSE)LVGTAA(MSE)LRAVSTPHDA EVVELPESFDFKRISTQTTPQPL(MSE)AVFDLPAEPEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSAD VFSPKVVQAS(MSE)GALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEV AAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMLSANQIKFLRSLRERKYRLREQAFAVEGPKLVGEMLPFYRCRMLVGTAAMLRAVSTPHDAEVVELPESFDFKRIST QTTPQPLMAVFDLPAEPEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPT PLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESL NVAIATAILCSEWRRRS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC80860 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 LEU n 1 6 SER n 1 7 ALA n 1 8 ASN n 1 9 GLN n 1 10 ILE n 1 11 LYS n 1 12 PHE n 1 13 LEU n 1 14 ARG n 1 15 SER n 1 16 LEU n 1 17 ARG n 1 18 GLU n 1 19 ARG n 1 20 LYS n 1 21 TYR n 1 22 ARG n 1 23 LEU n 1 24 ARG n 1 25 GLU n 1 26 GLN n 1 27 ALA n 1 28 PHE n 1 29 ALA n 1 30 VAL n 1 31 GLU n 1 32 GLY n 1 33 PRO n 1 34 LYS n 1 35 LEU n 1 36 VAL n 1 37 GLY n 1 38 GLU n 1 39 MSE n 1 40 LEU n 1 41 PRO n 1 42 PHE n 1 43 TYR n 1 44 ARG n 1 45 CYS n 1 46 ARG n 1 47 MSE n 1 48 LEU n 1 49 VAL n 1 50 GLY n 1 51 THR n 1 52 ALA n 1 53 ALA n 1 54 MSE n 1 55 LEU n 1 56 ARG n 1 57 ALA n 1 58 VAL n 1 59 SER n 1 60 THR n 1 61 PRO n 1 62 HIS n 1 63 ASP n 1 64 ALA n 1 65 GLU n 1 66 VAL n 1 67 VAL n 1 68 GLU n 1 69 LEU n 1 70 PRO n 1 71 GLU n 1 72 SER n 1 73 PHE n 1 74 ASP n 1 75 PHE n 1 76 LYS n 1 77 ARG n 1 78 ILE n 1 79 SER n 1 80 THR n 1 81 GLN n 1 82 THR n 1 83 THR n 1 84 PRO n 1 85 GLN n 1 86 PRO n 1 87 LEU n 1 88 MSE n 1 89 ALA n 1 90 VAL n 1 91 PHE n 1 92 ASP n 1 93 LEU n 1 94 PRO n 1 95 ALA n 1 96 GLU n 1 97 PRO n 1 98 GLU n 1 99 PRO n 1 100 VAL n 1 101 VAL n 1 102 GLU n 1 103 GLY n 1 104 LEU n 1 105 THR n 1 106 LEU n 1 107 LEU n 1 108 LEU n 1 109 ASP n 1 110 GLY n 1 111 VAL n 1 112 GLN n 1 113 ASP n 1 114 PRO n 1 115 GLY n 1 116 ASN n 1 117 VAL n 1 118 GLY n 1 119 THR n 1 120 ILE n 1 121 LEU n 1 122 ARG n 1 123 THR n 1 124 ALA n 1 125 ASP n 1 126 TRP n 1 127 PHE n 1 128 GLY n 1 129 ILE n 1 130 ARG n 1 131 HIS n 1 132 VAL n 1 133 TRP n 1 134 LEU n 1 135 GLY n 1 136 THR n 1 137 GLY n 1 138 SER n 1 139 ALA n 1 140 ASP n 1 141 VAL n 1 142 PHE n 1 143 SER n 1 144 PRO n 1 145 LYS n 1 146 VAL n 1 147 VAL n 1 148 GLN n 1 149 ALA n 1 150 SER n 1 151 MSE n 1 152 GLY n 1 153 ALA n 1 154 LEU n 1 155 ALA n 1 156 ARG n 1 157 VAL n 1 158 GLN n 1 159 PRO n 1 160 THR n 1 161 PRO n 1 162 LEU n 1 163 LYS n 1 164 ASN n 1 165 THR n 1 166 VAL n 1 167 ASP n 1 168 THR n 1 169 LEU n 1 170 ALA n 1 171 TYR n 1 172 PHE n 1 173 ARG n 1 174 ARG n 1 175 GLN n 1 176 GLY n 1 177 ILE n 1 178 PRO n 1 179 VAL n 1 180 TYR n 1 181 GLY n 1 182 ALA n 1 183 PHE n 1 184 LEU n 1 185 ASP n 1 186 GLY n 1 187 GLN n 1 188 SER n 1 189 LEU n 1 190 TYR n 1 191 GLU n 1 192 ALA n 1 193 PRO n 1 194 LEU n 1 195 PRO n 1 196 ASN n 1 197 PHE n 1 198 THR n 1 199 GLU n 1 200 PRO n 1 201 ALA n 1 202 ILE n 1 203 LEU n 1 204 VAL n 1 205 LEU n 1 206 GLY n 1 207 SER n 1 208 GLU n 1 209 GLY n 1 210 ARG n 1 211 GLY n 1 212 ILE n 1 213 SER n 1 214 PRO n 1 215 GLU n 1 216 VAL n 1 217 ALA n 1 218 ALA n 1 219 GLU n 1 220 ILE n 1 221 THR n 1 222 ASP n 1 223 ARG n 1 224 LEU n 1 225 THR n 1 226 ILE n 1 227 PRO n 1 228 ALA n 1 229 SER n 1 230 GLY n 1 231 LEU n 1 232 SER n 1 233 VAL n 1 234 LYS n 1 235 GLY n 1 236 HIS n 1 237 THR n 1 238 GLU n 1 239 SER n 1 240 LEU n 1 241 ASN n 1 242 VAL n 1 243 ALA n 1 244 ILE n 1 245 ALA n 1 246 THR n 1 247 ALA n 1 248 ILE n 1 249 LEU n 1 250 CYS n 1 251 SER n 1 252 GLU n 1 253 TRP n 1 254 ARG n 1 255 ARG n 1 256 ARG n 1 257 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Porphyromonas _entity_src_gen.pdbx_gene_src_gene 'SpoU, PG_0744' _entity_src_gen.gene_src_species 'Porphyromonas gingivalis' _entity_src_gen.gene_src_strain W83 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Porphyromonas gingivalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 242619 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain TIGR4 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7MW92_PORGI _struct_ref.pdbx_db_accession Q7MW92 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2I6D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 257 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7MW92 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 254 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 254 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2I6D SER A 1 ? UNP Q7MW92 ? ? 'CLONING ARTIFACT' -2 1 1 2I6D ASN A 2 ? UNP Q7MW92 ? ? 'CLONING ARTIFACT' -1 2 1 2I6D ALA A 3 ? UNP Q7MW92 ? ? 'CLONING ARTIFACT' 0 3 1 2I6D MSE A 4 ? UNP Q7MW92 MET 1 'MODIFIED RESIDUE' 1 4 1 2I6D MSE A 39 ? UNP Q7MW92 MET 36 'MODIFIED RESIDUE' 36 5 1 2I6D MSE A 47 ? UNP Q7MW92 MET 44 'MODIFIED RESIDUE' 44 6 1 2I6D MSE A 54 ? UNP Q7MW92 MET 51 'MODIFIED RESIDUE' 51 7 1 2I6D MSE A 88 ? UNP Q7MW92 MET 85 'MODIFIED RESIDUE' 85 8 1 2I6D MSE A 151 ? UNP Q7MW92 MET 148 'MODIFIED RESIDUE' 148 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2I6D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.8M NaH2PO4, 1.2M K2HPO4, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-07-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97951 1.0 2 0.97962 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97951, 0.97962' # _reflns.entry_id 2I6D _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 37.1 _reflns.d_resolution_high 1.85 _reflns.number_obs 23206 _reflns.number_all 23206 _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 89.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.35 _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2I6D _refine.ls_number_reflns_obs 22012 _refine.ls_number_reflns_all 23206 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.10 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 98.33 _refine.ls_R_factor_obs 0.19126 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18892 _refine.ls_R_factor_R_free 0.2347 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1193 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.B_iso_mean 34.802 _refine.aniso_B[1][1] 0.90 _refine.aniso_B[2][2] -0.04 _refine.aniso_B[3][3] -0.86 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.153 _refine.pdbx_overall_ESU_R_Free 0.145 _refine.overall_SU_ML 0.101 _refine.overall_SU_B 6.447 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1933 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 315 _refine_hist.number_atoms_total 2252 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 37.10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 2069 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.415 1.986 ? 2829 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.269 5.000 ? 271 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.463 22.414 ? 87 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.601 15.000 ? 347 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.033 15.000 ? 22 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 324 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1591 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 988 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.311 0.200 ? 1426 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.152 0.200 ? 237 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.189 0.200 ? 61 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.232 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.996 1.500 ? 1344 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.366 2.000 ? 2124 'X-RAY DIFFRACTION' ? r_scbond_it 2.294 3.000 ? 812 'X-RAY DIFFRACTION' ? r_scangle_it 3.317 4.500 ? 699 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.number_reflns_R_work 1386 _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.percent_reflns_obs 85.00 _refine_ls_shell.R_factor_R_free 0.306 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2I6D _struct.title 'The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.' _struct.pdbx_descriptor 'RNA methyltransferase, TrmH family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2I6D _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;RNA methyltransferase, TrmH family, stuctural genomics, Porphyromonas gingivalis, knot, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 6 ? LEU A 16 ? SER A 3 LEU A 13 1 ? 11 HELX_P HELX_P2 2 GLU A 18 ? GLN A 26 ? GLU A 15 GLN A 23 1 ? 9 HELX_P HELX_P3 3 GLY A 32 ? LEU A 40 ? GLY A 29 LEU A 37 1 ? 9 HELX_P HELX_P4 4 PRO A 41 ? TYR A 43 ? PRO A 38 TYR A 40 5 ? 3 HELX_P HELX_P5 5 ALA A 52 ? ALA A 57 ? ALA A 49 ALA A 54 1 ? 6 HELX_P HELX_P6 6 ASP A 74 ? ILE A 78 ? ASP A 71 ILE A 75 5 ? 5 HELX_P HELX_P7 7 ASP A 113 ? GLY A 128 ? ASP A 110 GLY A 125 1 ? 16 HELX_P HELX_P8 8 SER A 143 ? ALA A 149 ? SER A 140 ALA A 146 1 ? 7 HELX_P HELX_P9 9 GLY A 152 ? ARG A 156 ? GLY A 149 ARG A 153 5 ? 5 HELX_P HELX_P10 10 ASN A 164 ? GLN A 175 ? ASN A 161 GLN A 172 1 ? 12 HELX_P HELX_P11 11 SER A 213 ? ALA A 218 ? SER A 210 ALA A 215 1 ? 6 HELX_P HELX_P12 12 ASN A 241 ? ARG A 256 ? ASN A 238 ARG A 253 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A LEU 5 N ? ? A MSE 1 A LEU 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A GLU 38 C ? ? ? 1_555 A MSE 39 N A ? A GLU 35 A MSE 36 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A GLU 38 C ? ? ? 1_555 A MSE 39 N B ? A GLU 35 A MSE 36 1_555 ? ? ? ? ? ? ? 1.337 ? covale5 covale ? ? A MSE 39 C A ? ? 1_555 A LEU 40 N ? ? A MSE 36 A LEU 37 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale ? ? A MSE 39 C B ? ? 1_555 A LEU 40 N ? ? A MSE 36 A LEU 37 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? A ARG 46 C ? ? ? 1_555 A MSE 47 N ? ? A ARG 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale ? ? A MSE 47 C ? ? ? 1_555 A LEU 48 N ? ? A MSE 44 A LEU 45 1_555 ? ? ? ? ? ? ? 1.331 ? covale9 covale ? ? A ALA 53 C ? ? ? 1_555 A MSE 54 N ? ? A ALA 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? A MSE 54 C ? ? ? 1_555 A LEU 55 N ? ? A MSE 51 A LEU 52 1_555 ? ? ? ? ? ? ? 1.328 ? covale11 covale ? ? A LEU 87 C ? ? ? 1_555 A MSE 88 N ? ? A LEU 84 A MSE 85 1_555 ? ? ? ? ? ? ? 1.325 ? covale12 covale ? ? A MSE 88 C ? ? ? 1_555 A ALA 89 N ? ? A MSE 85 A ALA 86 1_555 ? ? ? ? ? ? ? 1.334 ? covale13 covale ? ? A SER 150 C ? ? ? 1_555 A MSE 151 N B ? A SER 147 A MSE 148 1_555 ? ? ? ? ? ? ? 1.331 ? covale14 covale ? ? A SER 150 C ? ? ? 1_555 A MSE 151 N A ? A SER 147 A MSE 148 1_555 ? ? ? ? ? ? ? 1.334 ? covale15 covale ? ? A MSE 151 C B ? ? 1_555 A GLY 152 N ? ? A MSE 148 A GLY 149 1_555 ? ? ? ? ? ? ? 1.329 ? covale16 covale ? ? A MSE 151 C A ? ? 1_555 A GLY 152 N ? ? A MSE 148 A GLY 149 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 27 ? GLU A 31 ? ALA A 24 GLU A 28 A 2 LEU A 87 ? ASP A 92 ? LEU A 84 ASP A 89 A 3 CYS A 45 ? THR A 51 ? CYS A 42 THR A 48 A 4 GLU A 65 ? LEU A 69 ? GLU A 62 LEU A 66 B 1 GLN A 158 ? PRO A 161 ? GLN A 155 PRO A 158 B 2 HIS A 131 ? LEU A 134 ? HIS A 128 LEU A 131 B 3 LEU A 104 ? ASP A 109 ? LEU A 101 ASP A 106 B 4 ALA A 201 ? GLY A 206 ? ALA A 198 GLY A 203 B 5 VAL A 179 ? ALA A 182 ? VAL A 176 ALA A 179 B 6 ASP A 222 ? THR A 225 ? ASP A 219 THR A 222 B 7 GLN A 187 ? SER A 188 ? GLN A 184 SER A 185 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 30 ? N VAL A 27 O ALA A 89 ? O ALA A 86 A 2 3 O VAL A 90 ? O VAL A 87 N MSE A 47 ? N MSE A 44 A 3 4 N GLY A 50 ? N GLY A 47 O LEU A 69 ? O LEU A 66 B 1 2 O THR A 160 ? O THR A 157 N LEU A 134 ? N LEU A 131 B 2 3 O TRP A 133 ? O TRP A 130 N LEU A 106 ? N LEU A 103 B 3 4 N LEU A 107 ? N LEU A 104 O LEU A 205 ? O LEU A 202 B 4 5 O ILE A 202 ? O ILE A 199 N TYR A 180 ? N TYR A 177 B 5 6 N GLY A 181 ? N GLY A 178 O LEU A 224 ? O LEU A 221 B 6 7 O THR A 225 ? O THR A 222 N GLN A 187 ? N GLN A 184 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE ACY A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 GLY A 110 ? GLY A 107 . ? 1_555 ? 2 AC1 9 VAL A 111 ? VAL A 108 . ? 1_555 ? 3 AC1 9 GLN A 112 ? GLN A 109 . ? 1_555 ? 4 AC1 9 ASP A 113 ? ASP A 110 . ? 1_555 ? 5 AC1 9 ASN A 116 ? ASN A 113 . ? 1_555 ? 6 AC1 9 SER A 207 ? SER A 204 . ? 1_555 ? 7 AC1 9 ARG A 210 ? ARG A 207 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 320 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 536 . ? 1_555 ? # _database_PDB_matrix.entry_id 2I6D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2I6D _atom_sites.fract_transf_matrix[1][1] 0.023854 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009335 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008309 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 LEU 5 2 2 LEU LEU A . n A 1 6 SER 6 3 3 SER SER A . n A 1 7 ALA 7 4 4 ALA ALA A . n A 1 8 ASN 8 5 5 ASN ASN A . n A 1 9 GLN 9 6 6 GLN GLN A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 LYS 11 8 8 LYS LYS A . n A 1 12 PHE 12 9 9 PHE PHE A . n A 1 13 LEU 13 10 10 LEU LEU A . n A 1 14 ARG 14 11 11 ARG ARG A . n A 1 15 SER 15 12 12 SER SER A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 ARG 17 14 14 ARG ARG A . n A 1 18 GLU 18 15 15 GLU GLU A . n A 1 19 ARG 19 16 16 ARG ARG A . n A 1 20 LYS 20 17 17 LYS LYS A . n A 1 21 TYR 21 18 18 TYR TYR A . n A 1 22 ARG 22 19 19 ARG ARG A . n A 1 23 LEU 23 20 20 LEU LEU A . n A 1 24 ARG 24 21 21 ARG ARG A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 GLN 26 23 23 GLN GLN A . n A 1 27 ALA 27 24 24 ALA ALA A . n A 1 28 PHE 28 25 25 PHE PHE A . n A 1 29 ALA 29 26 26 ALA ALA A . n A 1 30 VAL 30 27 27 VAL VAL A . n A 1 31 GLU 31 28 28 GLU GLU A . n A 1 32 GLY 32 29 29 GLY GLY A . n A 1 33 PRO 33 30 30 PRO PRO A . n A 1 34 LYS 34 31 31 LYS LYS A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 GLU 38 35 35 GLU GLU A . n A 1 39 MSE 39 36 36 MSE MSE A . n A 1 40 LEU 40 37 37 LEU LEU A . n A 1 41 PRO 41 38 38 PRO PRO A . n A 1 42 PHE 42 39 39 PHE PHE A . n A 1 43 TYR 43 40 40 TYR TYR A . n A 1 44 ARG 44 41 41 ARG ARG A . n A 1 45 CYS 45 42 42 CYS CYS A . n A 1 46 ARG 46 43 43 ARG ARG A . n A 1 47 MSE 47 44 44 MSE MSE A . n A 1 48 LEU 48 45 45 LEU LEU A . n A 1 49 VAL 49 46 46 VAL VAL A . n A 1 50 GLY 50 47 47 GLY GLY A . n A 1 51 THR 51 48 48 THR THR A . n A 1 52 ALA 52 49 49 ALA ALA A . n A 1 53 ALA 53 50 50 ALA ALA A . n A 1 54 MSE 54 51 51 MSE MSE A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 ARG 56 53 53 ARG ARG A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 VAL 58 55 55 VAL VAL A . n A 1 59 SER 59 56 56 SER SER A . n A 1 60 THR 60 57 57 THR THR A . n A 1 61 PRO 61 58 58 PRO PRO A . n A 1 62 HIS 62 59 59 HIS HIS A . n A 1 63 ASP 63 60 60 ASP ASP A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 GLU 65 62 62 GLU GLU A . n A 1 66 VAL 66 63 63 VAL VAL A . n A 1 67 VAL 67 64 64 VAL VAL A . n A 1 68 GLU 68 65 65 GLU GLU A . n A 1 69 LEU 69 66 66 LEU LEU A . n A 1 70 PRO 70 67 67 PRO PRO A . n A 1 71 GLU 71 68 68 GLU GLU A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 PHE 73 70 70 PHE PHE A . n A 1 74 ASP 74 71 71 ASP ASP A . n A 1 75 PHE 75 72 72 PHE PHE A . n A 1 76 LYS 76 73 73 LYS LYS A . n A 1 77 ARG 77 74 74 ARG ARG A . n A 1 78 ILE 78 75 75 ILE ILE A . n A 1 79 SER 79 76 76 SER SER A . n A 1 80 THR 80 77 77 THR THR A . n A 1 81 GLN 81 78 78 GLN GLN A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 THR 83 80 80 THR THR A . n A 1 84 PRO 84 81 81 PRO PRO A . n A 1 85 GLN 85 82 82 GLN GLN A . n A 1 86 PRO 86 83 83 PRO PRO A . n A 1 87 LEU 87 84 84 LEU LEU A . n A 1 88 MSE 88 85 85 MSE MSE A . n A 1 89 ALA 89 86 86 ALA ALA A . n A 1 90 VAL 90 87 87 VAL VAL A . n A 1 91 PHE 91 88 88 PHE PHE A . n A 1 92 ASP 92 89 89 ASP ASP A . n A 1 93 LEU 93 90 90 LEU LEU A . n A 1 94 PRO 94 91 91 PRO PRO A . n A 1 95 ALA 95 92 92 ALA ALA A . n A 1 96 GLU 96 93 93 GLU GLU A . n A 1 97 PRO 97 94 94 PRO PRO A . n A 1 98 GLU 98 95 95 GLU GLU A . n A 1 99 PRO 99 96 96 PRO PRO A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 VAL 101 98 98 VAL VAL A . n A 1 102 GLU 102 99 99 GLU GLU A . n A 1 103 GLY 103 100 100 GLY GLY A . n A 1 104 LEU 104 101 101 LEU LEU A . n A 1 105 THR 105 102 102 THR THR A . n A 1 106 LEU 106 103 103 LEU LEU A . n A 1 107 LEU 107 104 104 LEU LEU A . n A 1 108 LEU 108 105 105 LEU LEU A . n A 1 109 ASP 109 106 106 ASP ASP A . n A 1 110 GLY 110 107 107 GLY GLY A . n A 1 111 VAL 111 108 108 VAL VAL A . n A 1 112 GLN 112 109 109 GLN GLN A . n A 1 113 ASP 113 110 110 ASP ASP A . n A 1 114 PRO 114 111 111 PRO PRO A . n A 1 115 GLY 115 112 112 GLY GLY A . n A 1 116 ASN 116 113 113 ASN ASN A . n A 1 117 VAL 117 114 114 VAL VAL A . n A 1 118 GLY 118 115 115 GLY GLY A . n A 1 119 THR 119 116 116 THR THR A . n A 1 120 ILE 120 117 117 ILE ILE A . n A 1 121 LEU 121 118 118 LEU LEU A . n A 1 122 ARG 122 119 119 ARG ARG A . n A 1 123 THR 123 120 120 THR THR A . n A 1 124 ALA 124 121 121 ALA ALA A . n A 1 125 ASP 125 122 122 ASP ASP A . n A 1 126 TRP 126 123 123 TRP TRP A . n A 1 127 PHE 127 124 124 PHE PHE A . n A 1 128 GLY 128 125 125 GLY GLY A . n A 1 129 ILE 129 126 126 ILE ILE A . n A 1 130 ARG 130 127 127 ARG ARG A . n A 1 131 HIS 131 128 128 HIS HIS A . n A 1 132 VAL 132 129 129 VAL VAL A . n A 1 133 TRP 133 130 130 TRP TRP A . n A 1 134 LEU 134 131 131 LEU LEU A . n A 1 135 GLY 135 132 132 GLY GLY A . n A 1 136 THR 136 133 133 THR THR A . n A 1 137 GLY 137 134 134 GLY GLY A . n A 1 138 SER 138 135 135 SER SER A . n A 1 139 ALA 139 136 136 ALA ALA A . n A 1 140 ASP 140 137 137 ASP ASP A . n A 1 141 VAL 141 138 138 VAL VAL A . n A 1 142 PHE 142 139 139 PHE PHE A . n A 1 143 SER 143 140 140 SER SER A . n A 1 144 PRO 144 141 141 PRO PRO A . n A 1 145 LYS 145 142 142 LYS LYS A . n A 1 146 VAL 146 143 143 VAL VAL A . n A 1 147 VAL 147 144 144 VAL VAL A . n A 1 148 GLN 148 145 145 GLN GLN A . n A 1 149 ALA 149 146 146 ALA ALA A . n A 1 150 SER 150 147 147 SER SER A . n A 1 151 MSE 151 148 148 MSE MSE A . n A 1 152 GLY 152 149 149 GLY GLY A . n A 1 153 ALA 153 150 150 ALA ALA A . n A 1 154 LEU 154 151 151 LEU LEU A . n A 1 155 ALA 155 152 152 ALA ALA A . n A 1 156 ARG 156 153 153 ARG ARG A . n A 1 157 VAL 157 154 154 VAL VAL A . n A 1 158 GLN 158 155 155 GLN GLN A . n A 1 159 PRO 159 156 156 PRO PRO A . n A 1 160 THR 160 157 157 THR THR A . n A 1 161 PRO 161 158 158 PRO PRO A . n A 1 162 LEU 162 159 159 LEU LEU A . n A 1 163 LYS 163 160 160 LYS LYS A . n A 1 164 ASN 164 161 161 ASN ASN A . n A 1 165 THR 165 162 162 THR THR A . n A 1 166 VAL 166 163 163 VAL VAL A . n A 1 167 ASP 167 164 164 ASP ASP A . n A 1 168 THR 168 165 165 THR THR A . n A 1 169 LEU 169 166 166 LEU LEU A . n A 1 170 ALA 170 167 167 ALA ALA A . n A 1 171 TYR 171 168 168 TYR TYR A . n A 1 172 PHE 172 169 169 PHE PHE A . n A 1 173 ARG 173 170 170 ARG ARG A . n A 1 174 ARG 174 171 171 ARG ARG A . n A 1 175 GLN 175 172 172 GLN GLN A . n A 1 176 GLY 176 173 173 GLY GLY A . n A 1 177 ILE 177 174 174 ILE ILE A . n A 1 178 PRO 178 175 175 PRO PRO A . n A 1 179 VAL 179 176 176 VAL VAL A . n A 1 180 TYR 180 177 177 TYR TYR A . n A 1 181 GLY 181 178 178 GLY GLY A . n A 1 182 ALA 182 179 179 ALA ALA A . n A 1 183 PHE 183 180 180 PHE PHE A . n A 1 184 LEU 184 181 181 LEU LEU A . n A 1 185 ASP 185 182 182 ASP ASP A . n A 1 186 GLY 186 183 183 GLY GLY A . n A 1 187 GLN 187 184 184 GLN GLN A . n A 1 188 SER 188 185 185 SER SER A . n A 1 189 LEU 189 186 186 LEU LEU A . n A 1 190 TYR 190 187 187 TYR TYR A . n A 1 191 GLU 191 188 188 GLU GLU A . n A 1 192 ALA 192 189 189 ALA ALA A . n A 1 193 PRO 193 190 190 PRO PRO A . n A 1 194 LEU 194 191 191 LEU LEU A . n A 1 195 PRO 195 192 192 PRO PRO A . n A 1 196 ASN 196 193 193 ASN ASN A . n A 1 197 PHE 197 194 194 PHE PHE A . n A 1 198 THR 198 195 195 THR THR A . n A 1 199 GLU 199 196 196 GLU GLU A . n A 1 200 PRO 200 197 197 PRO PRO A . n A 1 201 ALA 201 198 198 ALA ALA A . n A 1 202 ILE 202 199 199 ILE ILE A . n A 1 203 LEU 203 200 200 LEU LEU A . n A 1 204 VAL 204 201 201 VAL VAL A . n A 1 205 LEU 205 202 202 LEU LEU A . n A 1 206 GLY 206 203 203 GLY GLY A . n A 1 207 SER 207 204 204 SER SER A . n A 1 208 GLU 208 205 205 GLU GLU A . n A 1 209 GLY 209 206 206 GLY GLY A . n A 1 210 ARG 210 207 207 ARG ARG A . n A 1 211 GLY 211 208 208 GLY GLY A . n A 1 212 ILE 212 209 209 ILE ILE A . n A 1 213 SER 213 210 210 SER SER A . n A 1 214 PRO 214 211 211 PRO PRO A . n A 1 215 GLU 215 212 212 GLU GLU A . n A 1 216 VAL 216 213 213 VAL VAL A . n A 1 217 ALA 217 214 214 ALA ALA A . n A 1 218 ALA 218 215 215 ALA ALA A . n A 1 219 GLU 219 216 216 GLU GLU A . n A 1 220 ILE 220 217 217 ILE ILE A . n A 1 221 THR 221 218 218 THR THR A . n A 1 222 ASP 222 219 219 ASP ASP A . n A 1 223 ARG 223 220 220 ARG ARG A . n A 1 224 LEU 224 221 221 LEU LEU A . n A 1 225 THR 225 222 222 THR THR A . n A 1 226 ILE 226 223 223 ILE ILE A . n A 1 227 PRO 227 224 224 PRO PRO A . n A 1 228 ALA 228 225 225 ALA ALA A . n A 1 229 SER 229 226 226 SER SER A . n A 1 230 GLY 230 227 227 GLY GLY A . n A 1 231 LEU 231 228 228 LEU LEU A . n A 1 232 SER 232 229 229 SER SER A . n A 1 233 VAL 233 230 230 VAL VAL A . n A 1 234 LYS 234 231 ? ? ? A . n A 1 235 GLY 235 232 ? ? ? A . n A 1 236 HIS 236 233 ? ? ? A . n A 1 237 THR 237 234 ? ? ? A . n A 1 238 GLU 238 235 235 GLU GLU A . n A 1 239 SER 239 236 236 SER SER A . n A 1 240 LEU 240 237 237 LEU LEU A . n A 1 241 ASN 241 238 238 ASN ASN A . n A 1 242 VAL 242 239 239 VAL VAL A . n A 1 243 ALA 243 240 240 ALA ALA A . n A 1 244 ILE 244 241 241 ILE ILE A . n A 1 245 ALA 245 242 242 ALA ALA A . n A 1 246 THR 246 243 243 THR THR A . n A 1 247 ALA 247 244 244 ALA ALA A . n A 1 248 ILE 248 245 245 ILE ILE A . n A 1 249 LEU 249 246 246 LEU LEU A . n A 1 250 CYS 250 247 247 CYS CYS A . n A 1 251 SER 251 248 248 SER SER A . n A 1 252 GLU 252 249 249 GLU GLU A . n A 1 253 TRP 253 250 250 TRP TRP A . n A 1 254 ARG 254 251 251 ARG ARG A . n A 1 255 ARG 255 252 252 ARG ARG A . n A 1 256 ARG 256 253 253 ARG ARG A . n A 1 257 SER 257 254 254 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 36 ? MET SELENOMETHIONINE 3 A MSE 47 A MSE 44 ? MET SELENOMETHIONINE 4 A MSE 54 A MSE 51 ? MET SELENOMETHIONINE 5 A MSE 88 A MSE 85 ? MET SELENOMETHIONINE 6 A MSE 151 A MSE 148 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2890 ? 2 MORE -20 ? 2 'SSA (A^2)' 22870 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 41.9210000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 60.1760000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 456 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-17 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 9.9235 22.9791 51.2669 0.0473 -0.0600 -0.0380 0.0003 -0.0300 -0.0503 3.7396 9.0521 1.8703 -0.0142 -0.0302 -0.5282 0.1795 -0.0809 0.1157 0.3451 -0.1299 -0.1034 -0.3990 0.1765 -0.0496 'X-RAY DIFFRACTION' 2 ? refined 2.1624 23.9030 47.4925 0.0262 -0.0927 0.0483 0.0115 -0.0351 -0.0641 4.2184 9.2552 3.9887 -1.5845 0.1474 -1.4801 0.1353 -0.0863 0.1842 -0.3142 -0.0326 0.4666 0.0301 -0.0550 -0.1027 'X-RAY DIFFRACTION' 3 ? refined 23.4022 6.1490 45.0214 -0.0973 -0.1091 -0.1245 0.0141 -0.0567 -0.0542 2.9642 5.8113 3.7161 -0.3394 1.2508 0.0266 -0.1304 -0.2929 0.2443 0.2335 -0.0314 -0.0047 -0.3756 0.1281 0.1618 'X-RAY DIFFRACTION' 4 ? refined 16.2961 1.6738 42.7268 -0.1583 -0.1490 -0.0949 0.0652 -0.0077 -0.0531 8.8939 2.5453 16.4446 4.3934 8.6834 3.7547 -0.1105 -0.1331 0.0748 0.0238 -0.0721 0.1410 -0.0405 -0.3217 0.1826 'X-RAY DIFFRACTION' 5 ? refined 18.9318 11.6416 46.3851 0.0250 -0.0720 -0.0429 0.0057 -0.0076 -0.1135 8.2918 3.0337 3.3686 -3.8326 1.0593 -2.1457 -0.0027 -0.1086 0.2160 0.0300 0.0083 -0.1426 -0.5617 0.0301 -0.0056 'X-RAY DIFFRACTION' 6 ? refined 31.5661 -2.7476 44.3431 -0.1211 0.0475 -0.1412 0.0640 -0.0369 0.0077 4.5963 2.5153 4.5900 0.7318 0.7764 1.4789 0.0330 -0.2081 -0.1272 -0.0682 0.0816 -0.0686 0.2264 0.7988 -0.1147 'X-RAY DIFFRACTION' 7 ? refined 27.4571 -3.2990 33.0952 -0.0821 -0.0546 -0.1255 0.0291 -0.0441 -0.0320 2.3454 4.2406 4.4387 -1.5161 -0.0388 -1.1774 -0.0204 0.1354 -0.0400 -0.3574 0.0304 -0.1745 0.2228 0.5335 -0.0100 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 0 A 3 A 44 A 47 ? 'X-RAY DIFFRACTION' ? 2 2 A 45 A 48 A 93 A 96 ? 'X-RAY DIFFRACTION' ? 3 3 A 94 A 97 A 118 A 121 ? 'X-RAY DIFFRACTION' ? 4 4 A 119 A 122 A 130 A 133 ? 'X-RAY DIFFRACTION' ? 5 5 A 131 A 134 A 162 A 165 ? 'X-RAY DIFFRACTION' ? 6 6 A 163 A 166 A 216 A 219 ? 'X-RAY DIFFRACTION' ? 7 7 A 217 A 220 A 254 A 257 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 SHELXD phasing . ? 6 SHELXE 'model building' . ? 7 MLPHARE phasing . ? 8 DM phasing . ? 9 SOLVE phasing . ? 10 RESOLVE phasing . ? 11 ARP/wARP 'model building' . ? 12 CCP4 phasing . ? 13 O 'model building' . ? 14 Coot 'model building' . ? 15 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. ; # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OH _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TYR _pdbx_validate_symm_contact.auth_seq_id_1 187 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 503 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_655 _pdbx_validate_symm_contact.dist 1.96 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CZ _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ARG _pdbx_validate_rmsd_bond.auth_seq_id_1 171 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 NH1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ARG _pdbx_validate_rmsd_bond.auth_seq_id_2 171 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.426 _pdbx_validate_rmsd_bond.bond_target_value 1.326 _pdbx_validate_rmsd_bond.bond_deviation 0.100 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 171 ? B CZ A ARG 171 ? B NH1 A ARG 171 ? B 123.96 120.30 3.66 0.50 N 2 1 NE A ARG 171 ? B CZ A ARG 171 ? B NH2 A ARG 171 ? B 115.90 120.30 -4.40 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 83 ? ? -79.50 46.63 2 1 ALA A 92 ? ? -64.40 96.32 3 1 GLU A 93 ? ? -31.63 111.55 4 1 SER A 226 ? ? -147.73 40.29 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A LYS 231 ? A LYS 234 4 1 Y 1 A GLY 232 ? A GLY 235 5 1 Y 1 A HIS 233 ? A HIS 236 6 1 Y 1 A THR 234 ? A THR 237 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETIC ACID' ACY 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY 1 301 301 ACY ACY A . C 3 HOH 1 302 1 HOH HOH A . C 3 HOH 2 303 2 HOH HOH A . C 3 HOH 3 304 3 HOH HOH A . C 3 HOH 4 305 4 HOH HOH A . C 3 HOH 5 306 5 HOH HOH A . C 3 HOH 6 307 6 HOH HOH A . C 3 HOH 7 308 7 HOH HOH A . C 3 HOH 8 309 8 HOH HOH A . C 3 HOH 9 310 9 HOH HOH A . C 3 HOH 10 311 10 HOH HOH A . C 3 HOH 11 312 11 HOH HOH A . C 3 HOH 12 313 12 HOH HOH A . C 3 HOH 13 314 13 HOH HOH A . C 3 HOH 14 315 14 HOH HOH A . C 3 HOH 15 316 15 HOH HOH A . C 3 HOH 16 317 16 HOH HOH A . C 3 HOH 17 318 17 HOH HOH A . C 3 HOH 18 319 18 HOH HOH A . C 3 HOH 19 320 19 HOH HOH A . C 3 HOH 20 321 20 HOH HOH A . C 3 HOH 21 322 21 HOH HOH A . C 3 HOH 22 323 22 HOH HOH A . C 3 HOH 23 324 23 HOH HOH A . C 3 HOH 24 325 24 HOH HOH A . C 3 HOH 25 326 25 HOH HOH A . C 3 HOH 26 327 26 HOH HOH A . C 3 HOH 27 328 27 HOH HOH A . C 3 HOH 28 329 28 HOH HOH A . C 3 HOH 29 330 29 HOH HOH A . C 3 HOH 30 331 30 HOH HOH A . C 3 HOH 31 332 31 HOH HOH A . C 3 HOH 32 333 32 HOH HOH A . C 3 HOH 33 334 33 HOH HOH A . C 3 HOH 34 335 34 HOH HOH A . C 3 HOH 35 336 35 HOH HOH A . C 3 HOH 36 337 36 HOH HOH A . C 3 HOH 37 338 37 HOH HOH A . C 3 HOH 38 339 38 HOH HOH A . C 3 HOH 39 340 39 HOH HOH A . C 3 HOH 40 341 40 HOH HOH A . C 3 HOH 41 342 41 HOH HOH A . C 3 HOH 42 343 42 HOH HOH A . C 3 HOH 43 344 43 HOH HOH A . C 3 HOH 44 345 44 HOH HOH A . C 3 HOH 45 346 45 HOH HOH A . C 3 HOH 46 347 46 HOH HOH A . C 3 HOH 47 348 47 HOH HOH A . C 3 HOH 48 349 48 HOH HOH A . C 3 HOH 49 350 49 HOH HOH A . C 3 HOH 50 351 50 HOH HOH A . C 3 HOH 51 352 51 HOH HOH A . C 3 HOH 52 353 52 HOH HOH A . C 3 HOH 53 354 53 HOH HOH A . C 3 HOH 54 355 54 HOH HOH A . C 3 HOH 55 356 55 HOH HOH A . C 3 HOH 56 357 56 HOH HOH A . C 3 HOH 57 358 57 HOH HOH A . C 3 HOH 58 359 58 HOH HOH A . C 3 HOH 59 360 59 HOH HOH A . C 3 HOH 60 361 60 HOH HOH A . C 3 HOH 61 362 61 HOH HOH A . C 3 HOH 62 363 62 HOH HOH A . C 3 HOH 63 364 63 HOH HOH A . C 3 HOH 64 365 64 HOH HOH A . C 3 HOH 65 366 65 HOH HOH A . C 3 HOH 66 367 66 HOH HOH A . C 3 HOH 67 368 67 HOH HOH A . C 3 HOH 68 369 68 HOH HOH A . C 3 HOH 69 370 69 HOH HOH A . C 3 HOH 70 371 70 HOH HOH A . C 3 HOH 71 372 71 HOH HOH A . C 3 HOH 72 373 72 HOH HOH A . C 3 HOH 73 374 73 HOH HOH A . C 3 HOH 74 375 74 HOH HOH A . C 3 HOH 75 376 75 HOH HOH A . C 3 HOH 76 377 76 HOH HOH A . C 3 HOH 77 378 77 HOH HOH A . C 3 HOH 78 379 78 HOH HOH A . C 3 HOH 79 380 79 HOH HOH A . C 3 HOH 80 381 80 HOH HOH A . C 3 HOH 81 382 81 HOH HOH A . C 3 HOH 82 383 82 HOH HOH A . C 3 HOH 83 384 83 HOH HOH A . C 3 HOH 84 385 84 HOH HOH A . C 3 HOH 85 386 85 HOH HOH A . C 3 HOH 86 387 86 HOH HOH A . C 3 HOH 87 388 87 HOH HOH A . C 3 HOH 88 389 88 HOH HOH A . C 3 HOH 89 390 89 HOH HOH A . C 3 HOH 90 391 90 HOH HOH A . C 3 HOH 91 392 91 HOH HOH A . C 3 HOH 92 393 92 HOH HOH A . C 3 HOH 93 394 93 HOH HOH A . C 3 HOH 94 395 94 HOH HOH A . C 3 HOH 95 396 95 HOH HOH A . C 3 HOH 96 397 96 HOH HOH A . C 3 HOH 97 398 97 HOH HOH A . C 3 HOH 98 399 98 HOH HOH A . C 3 HOH 99 400 99 HOH HOH A . C 3 HOH 100 401 100 HOH HOH A . C 3 HOH 101 402 101 HOH HOH A . C 3 HOH 102 403 102 HOH HOH A . C 3 HOH 103 404 103 HOH HOH A . C 3 HOH 104 405 104 HOH HOH A . C 3 HOH 105 406 105 HOH HOH A . C 3 HOH 106 407 106 HOH HOH A . C 3 HOH 107 408 107 HOH HOH A . C 3 HOH 108 409 108 HOH HOH A . C 3 HOH 109 410 109 HOH HOH A . C 3 HOH 110 411 110 HOH HOH A . C 3 HOH 111 412 111 HOH HOH A . C 3 HOH 112 413 112 HOH HOH A . C 3 HOH 113 414 113 HOH HOH A . C 3 HOH 114 415 114 HOH HOH A . C 3 HOH 115 416 115 HOH HOH A . C 3 HOH 116 417 116 HOH HOH A . C 3 HOH 117 418 117 HOH HOH A . C 3 HOH 118 419 118 HOH HOH A . C 3 HOH 119 420 119 HOH HOH A . C 3 HOH 120 421 120 HOH HOH A . C 3 HOH 121 422 121 HOH HOH A . C 3 HOH 122 423 122 HOH HOH A . C 3 HOH 123 424 123 HOH HOH A . C 3 HOH 124 425 124 HOH HOH A . C 3 HOH 125 426 125 HOH HOH A . C 3 HOH 126 427 126 HOH HOH A . C 3 HOH 127 428 127 HOH HOH A . C 3 HOH 128 429 128 HOH HOH A . C 3 HOH 129 430 129 HOH HOH A . C 3 HOH 130 431 130 HOH HOH A . C 3 HOH 131 432 131 HOH HOH A . C 3 HOH 132 433 132 HOH HOH A . C 3 HOH 133 434 133 HOH HOH A . C 3 HOH 134 435 134 HOH HOH A . C 3 HOH 135 436 135 HOH HOH A . C 3 HOH 136 437 136 HOH HOH A . C 3 HOH 137 438 137 HOH HOH A . C 3 HOH 138 439 138 HOH HOH A . C 3 HOH 139 440 139 HOH HOH A . C 3 HOH 140 441 140 HOH HOH A . C 3 HOH 141 442 141 HOH HOH A . C 3 HOH 142 443 142 HOH HOH A . C 3 HOH 143 444 143 HOH HOH A . C 3 HOH 144 445 144 HOH HOH A . C 3 HOH 145 446 145 HOH HOH A . C 3 HOH 146 447 146 HOH HOH A . C 3 HOH 147 448 147 HOH HOH A . C 3 HOH 148 449 148 HOH HOH A . C 3 HOH 149 450 149 HOH HOH A . C 3 HOH 150 451 150 HOH HOH A . C 3 HOH 151 452 151 HOH HOH A . C 3 HOH 152 453 152 HOH HOH A . C 3 HOH 153 454 153 HOH HOH A . C 3 HOH 154 455 154 HOH HOH A . C 3 HOH 155 456 155 HOH HOH A . C 3 HOH 156 457 156 HOH HOH A . C 3 HOH 157 458 157 HOH HOH A . C 3 HOH 158 459 158 HOH HOH A . C 3 HOH 159 460 159 HOH HOH A . C 3 HOH 160 461 160 HOH HOH A . C 3 HOH 161 462 161 HOH HOH A . C 3 HOH 162 463 162 HOH HOH A . C 3 HOH 163 464 163 HOH HOH A . C 3 HOH 164 465 164 HOH HOH A . C 3 HOH 165 466 165 HOH HOH A . C 3 HOH 166 467 166 HOH HOH A . C 3 HOH 167 468 167 HOH HOH A . C 3 HOH 168 469 168 HOH HOH A . C 3 HOH 169 470 169 HOH HOH A . C 3 HOH 170 471 170 HOH HOH A . C 3 HOH 171 472 171 HOH HOH A . C 3 HOH 172 473 172 HOH HOH A . C 3 HOH 173 474 173 HOH HOH A . C 3 HOH 174 475 174 HOH HOH A . C 3 HOH 175 476 175 HOH HOH A . C 3 HOH 176 477 176 HOH HOH A . C 3 HOH 177 478 177 HOH HOH A . C 3 HOH 178 479 178 HOH HOH A . C 3 HOH 179 480 179 HOH HOH A . C 3 HOH 180 481 180 HOH HOH A . C 3 HOH 181 482 181 HOH HOH A . C 3 HOH 182 483 182 HOH HOH A . C 3 HOH 183 484 183 HOH HOH A . C 3 HOH 184 485 184 HOH HOH A . C 3 HOH 185 486 185 HOH HOH A . C 3 HOH 186 487 186 HOH HOH A . C 3 HOH 187 488 187 HOH HOH A . C 3 HOH 188 489 188 HOH HOH A . C 3 HOH 189 490 189 HOH HOH A . C 3 HOH 190 491 190 HOH HOH A . C 3 HOH 191 492 191 HOH HOH A . C 3 HOH 192 493 192 HOH HOH A . C 3 HOH 193 494 193 HOH HOH A . C 3 HOH 194 495 194 HOH HOH A . C 3 HOH 195 496 195 HOH HOH A . C 3 HOH 196 497 196 HOH HOH A . C 3 HOH 197 498 197 HOH HOH A . C 3 HOH 198 499 198 HOH HOH A . C 3 HOH 199 500 199 HOH HOH A . C 3 HOH 200 501 200 HOH HOH A . C 3 HOH 201 502 201 HOH HOH A . C 3 HOH 202 503 202 HOH HOH A . C 3 HOH 203 504 203 HOH HOH A . C 3 HOH 204 505 204 HOH HOH A . C 3 HOH 205 506 205 HOH HOH A . C 3 HOH 206 507 206 HOH HOH A . C 3 HOH 207 508 207 HOH HOH A . C 3 HOH 208 509 208 HOH HOH A . C 3 HOH 209 510 209 HOH HOH A . C 3 HOH 210 511 210 HOH HOH A . C 3 HOH 211 512 211 HOH HOH A . C 3 HOH 212 513 212 HOH HOH A . C 3 HOH 213 514 213 HOH HOH A . C 3 HOH 214 515 214 HOH HOH A . C 3 HOH 215 516 215 HOH HOH A . C 3 HOH 216 517 216 HOH HOH A . C 3 HOH 217 518 217 HOH HOH A . C 3 HOH 218 519 218 HOH HOH A . C 3 HOH 219 520 219 HOH HOH A . C 3 HOH 220 521 220 HOH HOH A . C 3 HOH 221 522 221 HOH HOH A . C 3 HOH 222 523 222 HOH HOH A . C 3 HOH 223 524 223 HOH HOH A . C 3 HOH 224 525 224 HOH HOH A . C 3 HOH 225 526 225 HOH HOH A . C 3 HOH 226 527 226 HOH HOH A . C 3 HOH 227 528 227 HOH HOH A . C 3 HOH 228 529 228 HOH HOH A . C 3 HOH 229 530 229 HOH HOH A . C 3 HOH 230 531 230 HOH HOH A . C 3 HOH 231 532 231 HOH HOH A . C 3 HOH 232 533 232 HOH HOH A . C 3 HOH 233 534 233 HOH HOH A . C 3 HOH 234 535 234 HOH HOH A . C 3 HOH 235 536 235 HOH HOH A . C 3 HOH 236 537 236 HOH HOH A . C 3 HOH 237 538 237 HOH HOH A . C 3 HOH 238 539 238 HOH HOH A . C 3 HOH 239 540 239 HOH HOH A . C 3 HOH 240 541 240 HOH HOH A . C 3 HOH 241 542 241 HOH HOH A . C 3 HOH 242 543 242 HOH HOH A . C 3 HOH 243 544 243 HOH HOH A . C 3 HOH 244 545 244 HOH HOH A . C 3 HOH 245 546 245 HOH HOH A . C 3 HOH 246 547 246 HOH HOH A . C 3 HOH 247 548 247 HOH HOH A . C 3 HOH 248 549 248 HOH HOH A . C 3 HOH 249 550 249 HOH HOH A . C 3 HOH 250 551 250 HOH HOH A . C 3 HOH 251 552 251 HOH HOH A . C 3 HOH 252 553 252 HOH HOH A . C 3 HOH 253 554 253 HOH HOH A . C 3 HOH 254 555 255 HOH HOH A . C 3 HOH 255 556 256 HOH HOH A . C 3 HOH 256 557 257 HOH HOH A . C 3 HOH 257 558 258 HOH HOH A . C 3 HOH 258 559 259 HOH HOH A . C 3 HOH 259 560 260 HOH HOH A . C 3 HOH 260 561 261 HOH HOH A . C 3 HOH 261 562 262 HOH HOH A . C 3 HOH 262 563 263 HOH HOH A . C 3 HOH 263 564 264 HOH HOH A . C 3 HOH 264 565 265 HOH HOH A . C 3 HOH 265 566 266 HOH HOH A . C 3 HOH 266 567 267 HOH HOH A . C 3 HOH 267 568 268 HOH HOH A . C 3 HOH 268 569 269 HOH HOH A . C 3 HOH 269 570 270 HOH HOH A . C 3 HOH 270 571 271 HOH HOH A . C 3 HOH 271 572 272 HOH HOH A . C 3 HOH 272 573 273 HOH HOH A . C 3 HOH 273 574 274 HOH HOH A . C 3 HOH 274 575 275 HOH HOH A . C 3 HOH 275 576 276 HOH HOH A . C 3 HOH 276 577 277 HOH HOH A . C 3 HOH 277 578 278 HOH HOH A . C 3 HOH 278 579 279 HOH HOH A . C 3 HOH 279 580 280 HOH HOH A . C 3 HOH 280 581 281 HOH HOH A . C 3 HOH 281 582 282 HOH HOH A . C 3 HOH 282 583 283 HOH HOH A . C 3 HOH 283 584 284 HOH HOH A . C 3 HOH 284 585 285 HOH HOH A . C 3 HOH 285 586 286 HOH HOH A . C 3 HOH 286 587 287 HOH HOH A . C 3 HOH 287 588 288 HOH HOH A . C 3 HOH 288 589 289 HOH HOH A . C 3 HOH 289 590 290 HOH HOH A . C 3 HOH 290 591 291 HOH HOH A . C 3 HOH 291 592 292 HOH HOH A . C 3 HOH 292 593 293 HOH HOH A . C 3 HOH 293 594 294 HOH HOH A . C 3 HOH 294 595 295 HOH HOH A . C 3 HOH 295 596 296 HOH HOH A . C 3 HOH 296 597 297 HOH HOH A . C 3 HOH 297 598 299 HOH HOH A . C 3 HOH 298 599 300 HOH HOH A . C 3 HOH 299 600 301 HOH HOH A . C 3 HOH 300 601 302 HOH HOH A . C 3 HOH 301 602 303 HOH HOH A . C 3 HOH 302 603 304 HOH HOH A . C 3 HOH 303 604 305 HOH HOH A . C 3 HOH 304 605 306 HOH HOH A . C 3 HOH 305 606 307 HOH HOH A . C 3 HOH 306 607 308 HOH HOH A . C 3 HOH 307 608 310 HOH HOH A . C 3 HOH 308 609 314 HOH HOH A . C 3 HOH 309 610 315 HOH HOH A . C 3 HOH 310 611 316 HOH HOH A . C 3 HOH 311 612 317 HOH HOH A . C 3 HOH 312 613 318 HOH HOH A . C 3 HOH 313 614 319 HOH HOH A . C 3 HOH 314 615 320 HOH HOH A . C 3 HOH 315 616 321 HOH HOH A . #