HEADER SIGNALING PROTEIN 28-AUG-06 2I6F TITLE RECEIVER DOMAIN FROM MYXOCOCCUS XANTHUS SOCIAL MOTILITY PROTEIN FRZS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR FRZS; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RECEIVER DOMAIN (RESIDUES 1-124); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 3 ORGANISM_TAXID: 34; SOURCE 4 GENE: FRZS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21+; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS SOCIAL MOTILITY, SIGNALING, RECEIVER DOMAIN, TWO-COMPONENT, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.ECHOLS,J.FRASER,J.MERLIE,D.ZUSMAN,T.ALBER REVDAT 5 30-AUG-23 2I6F 1 REMARK SEQADV REVDAT 4 13-JUL-11 2I6F 1 VERSN REVDAT 3 09-JUN-10 2I6F 1 JRNL REVDAT 2 24-FEB-09 2I6F 1 VERSN REVDAT 1 13-MAR-07 2I6F 0 JRNL AUTH J.S.FRASER,J.P.MERLIE,N.ECHOLS,S.R.WEISFIELD,T.MIGNOT, JRNL AUTH 2 D.E.WEMMER,D.R.ZUSMAN,T.ALBER JRNL TITL AN ATYPICAL RECEIVER DOMAIN CONTROLS THE DYNAMIC POLAR JRNL TITL 2 LOCALIZATION OF THE MYXOCOCCUS XANTHUS SOCIAL MOTILITY JRNL TITL 3 PROTEIN FRZS. JRNL REF MOL.MICROBIOL. V. 65 319 2007 JRNL REFN ISSN 0950-382X JRNL PMID 17573816 JRNL DOI 10.1111/J.1365-2958.2007.05785.X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 30067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3977 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.590 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2713 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2571 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3675 ; 0.826 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5962 ; 0.671 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 4.807 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;40.555 ;25.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;10.971 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.105 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3075 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 495 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 532 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2566 ; 0.148 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1341 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1630 ; 0.075 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.091 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1908 ; 0.185 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 756 ; 0.025 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2857 ; 0.316 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 965 ; 0.414 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 817 ; 0.674 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 134.1581 90.1144 1.7682 REMARK 3 T TENSOR REMARK 3 T11: -0.0437 T22: -0.0818 REMARK 3 T33: -0.0456 T12: 0.0150 REMARK 3 T13: -0.0074 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.8971 L22: 1.0867 REMARK 3 L33: 2.0213 L12: -0.4052 REMARK 3 L13: -0.1650 L23: 0.0762 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: -0.0558 S13: 0.0570 REMARK 3 S21: 0.0209 S22: 0.0235 S23: -0.0265 REMARK 3 S31: -0.1840 S32: -0.0471 S33: -0.0771 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 108.3281 94.1131 21.4326 REMARK 3 T TENSOR REMARK 3 T11: -0.0737 T22: -0.0266 REMARK 3 T33: -0.0759 T12: 0.0747 REMARK 3 T13: -0.0127 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.7747 L22: 2.2539 REMARK 3 L33: 1.5803 L12: -0.6541 REMARK 3 L13: -0.3379 L23: -0.1270 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0316 S13: -0.0066 REMARK 3 S21: -0.0698 S22: -0.0568 S23: 0.0551 REMARK 3 S31: -0.0927 S32: -0.0855 S33: 0.0160 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 120 REMARK 3 ORIGIN FOR THE GROUP (A): 141.3783 113.5765 8.5706 REMARK 3 T TENSOR REMARK 3 T11: -0.0877 T22: -0.0479 REMARK 3 T33: 0.2233 T12: -0.0055 REMARK 3 T13: 0.0487 T23: -0.1568 REMARK 3 L TENSOR REMARK 3 L11: 4.5390 L22: 5.8445 REMARK 3 L33: 1.6395 L12: -0.2968 REMARK 3 L13: 1.5208 L23: 0.5215 REMARK 3 S TENSOR REMARK 3 S11: -0.1050 S12: -0.5565 S13: 0.8516 REMARK 3 S21: 0.2501 S22: -0.1504 S23: 0.6670 REMARK 3 S31: -0.2118 S32: -0.3075 S33: 0.2554 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : Y REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64000 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 2GKG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NACL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 71.23950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.23950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.71000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 71.23950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.23950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.71000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 71.23950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 71.23950 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 18.71000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 71.23950 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 71.23950 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 18.71000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 124 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLY C 121 REMARK 465 PHE C 122 REMARK 465 PRO C 123 REMARK 465 GLU C 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ASP A 74 CG OD1 OD2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 ASP A 110 CG OD1 OD2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 LYS C 3 CG CD CE NZ REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 ILE C 5 CG1 CG2 CD1 REMARK 470 LEU C 6 CG CD1 CD2 REMARK 470 SER C 20 CB OG REMARK 470 LEU C 22 CB CG CD1 CD2 REMARK 470 ARG C 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 ARG C 44 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 110 CB CG OD1 OD2 REMARK 470 GLN C 111 CG CD OE1 NE2 REMARK 470 GLU C 114 CG CD OE1 OE2 REMARK 470 ARG C 115 NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 30 N C O REMARK 480 ASP B 55 N C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 101 O HOH C 351 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 30 N ASP A 30 CA 0.184 REMARK 500 ASP A 30 CA ASP A 30 C 0.253 REMARK 500 ASP B 55 N ASP B 55 CA 0.448 REMARK 500 ASP B 55 CA ASP B 55 C 0.804 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 30 N - CA - CB ANGL. DEV. = 20.2 DEGREES REMARK 500 ASP A 30 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 ASP B 55 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP B 55 N - CA - CB ANGL. DEV. = 19.2 DEGREES REMARK 500 ASP B 55 N - CA - C ANGL. DEV. = -41.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 97 36.38 -91.63 REMARK 500 ALA B 97 32.89 -90.14 REMARK 500 ASP C 11 95.93 -67.13 REMARK 500 ALA C 97 36.69 -89.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 54 ASP B 55 -141.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GKG RELATED DB: PDB REMARK 900 HEXAGONAL CRYSTAL FORM REMARK 900 RELATED ID: 2NT3 RELATED DB: PDB REMARK 900 RELATED ID: 2NT4 RELATED DB: PDB DBREF 2I6F A 1 124 UNP Q1D4U9_MYXXD 1 124 DBREF 2I6F B 1 124 UNP Q1D4U9_MYXXD 1 124 DBREF 2I6F C 1 124 UNP Q1D4U9_MYXXD 1 124 SEQADV 2I6F GLY A -2 UNP CLONING ARTIFACT SEQADV 2I6F SER A -1 UNP CLONING ARTIFACT SEQADV 2I6F HIS A 0 UNP CLONING ARTIFACT SEQADV 2I6F GLY B -2 UNP CLONING ARTIFACT SEQADV 2I6F SER B -1 UNP CLONING ARTIFACT SEQADV 2I6F HIS B 0 UNP CLONING ARTIFACT SEQADV 2I6F GLY C -2 UNP CLONING ARTIFACT SEQADV 2I6F SER C -1 UNP CLONING ARTIFACT SEQADV 2I6F HIS C 0 UNP CLONING ARTIFACT SEQRES 1 A 127 GLY SER HIS MET SER LYS LYS ILE LEU ILE VAL GLU SER SEQRES 2 A 127 ASP THR ALA LEU SER ALA THR LEU ARG SER ALA LEU GLU SEQRES 3 A 127 GLY ARG GLY PHE THR VAL ASP GLU THR THR ASP GLY LYS SEQRES 4 A 127 GLY SER VAL GLU GLN ILE ARG ARG ASP ARG PRO ASP LEU SEQRES 5 A 127 VAL VAL LEU ALA VAL ASP LEU SER ALA GLY GLN ASN GLY SEQRES 6 A 127 TYR LEU ILE CYS GLY LYS LEU LYS LYS ASP ASP ASP LEU SEQRES 7 A 127 LYS ASN VAL PRO ILE VAL ILE ILE GLY ASN PRO ASP GLY SEQRES 8 A 127 PHE ALA GLN HIS ARG LYS LEU LYS ALA HIS ALA ASP GLU SEQRES 9 A 127 TYR VAL ALA LYS PRO VAL ASP ALA ASP GLN LEU VAL GLU SEQRES 10 A 127 ARG ALA GLY ALA LEU ILE GLY PHE PRO GLU SEQRES 1 B 127 GLY SER HIS MET SER LYS LYS ILE LEU ILE VAL GLU SER SEQRES 2 B 127 ASP THR ALA LEU SER ALA THR LEU ARG SER ALA LEU GLU SEQRES 3 B 127 GLY ARG GLY PHE THR VAL ASP GLU THR THR ASP GLY LYS SEQRES 4 B 127 GLY SER VAL GLU GLN ILE ARG ARG ASP ARG PRO ASP LEU SEQRES 5 B 127 VAL VAL LEU ALA VAL ASP LEU SER ALA GLY GLN ASN GLY SEQRES 6 B 127 TYR LEU ILE CYS GLY LYS LEU LYS LYS ASP ASP ASP LEU SEQRES 7 B 127 LYS ASN VAL PRO ILE VAL ILE ILE GLY ASN PRO ASP GLY SEQRES 8 B 127 PHE ALA GLN HIS ARG LYS LEU LYS ALA HIS ALA ASP GLU SEQRES 9 B 127 TYR VAL ALA LYS PRO VAL ASP ALA ASP GLN LEU VAL GLU SEQRES 10 B 127 ARG ALA GLY ALA LEU ILE GLY PHE PRO GLU SEQRES 1 C 127 GLY SER HIS MET SER LYS LYS ILE LEU ILE VAL GLU SER SEQRES 2 C 127 ASP THR ALA LEU SER ALA THR LEU ARG SER ALA LEU GLU SEQRES 3 C 127 GLY ARG GLY PHE THR VAL ASP GLU THR THR ASP GLY LYS SEQRES 4 C 127 GLY SER VAL GLU GLN ILE ARG ARG ASP ARG PRO ASP LEU SEQRES 5 C 127 VAL VAL LEU ALA VAL ASP LEU SER ALA GLY GLN ASN GLY SEQRES 6 C 127 TYR LEU ILE CYS GLY LYS LEU LYS LYS ASP ASP ASP LEU SEQRES 7 C 127 LYS ASN VAL PRO ILE VAL ILE ILE GLY ASN PRO ASP GLY SEQRES 8 C 127 PHE ALA GLN HIS ARG LYS LEU LYS ALA HIS ALA ASP GLU SEQRES 9 C 127 TYR VAL ALA LYS PRO VAL ASP ALA ASP GLN LEU VAL GLU SEQRES 10 C 127 ARG ALA GLY ALA LEU ILE GLY PHE PRO GLU HET CL A 304 1 HET CL B 301 1 HET CL B 302 1 HET CL C 303 1 HETNAM CL CHLORIDE ION FORMUL 4 CL 4(CL 1-) FORMUL 8 HOH *266(H2 O) HELIX 1 1 ASP A 11 GLY A 26 1 16 HELIX 2 2 GLY A 37 ARG A 46 1 10 HELIX 3 3 ASN A 61 LYS A 71 1 11 HELIX 4 4 ASN A 85 ASP A 87 5 3 HELIX 5 5 GLY A 88 LEU A 95 1 8 HELIX 6 6 ASP A 108 GLY A 121 1 14 HELIX 7 7 ASP B 11 ARG B 25 1 15 HELIX 8 8 GLY B 37 ARG B 46 1 10 HELIX 9 9 ASN B 61 ASP B 72 1 12 HELIX 10 10 ASN B 85 ASP B 87 5 3 HELIX 11 11 GLY B 88 LEU B 95 1 8 HELIX 12 12 ASP B 108 GLY B 121 1 14 HELIX 13 13 ASP C 11 GLY C 26 1 16 HELIX 14 14 GLY C 37 ARG C 46 1 10 HELIX 15 15 ASN C 61 ASP C 72 1 12 HELIX 16 16 ASN C 85 ASP C 87 5 3 HELIX 17 17 GLY C 88 LEU C 95 1 8 HELIX 18 18 ASP C 108 ILE C 120 1 13 SHEET 1 A 5 THR A 28 THR A 32 0 SHEET 2 A 5 LYS A 4 VAL A 8 1 N ILE A 5 O ASP A 30 SHEET 3 A 5 LEU A 49 ALA A 53 1 O VAL A 51 N VAL A 8 SHEET 4 A 5 ILE A 80 GLY A 84 1 O VAL A 81 N VAL A 50 SHEET 5 A 5 GLU A 101 ALA A 104 1 O VAL A 103 N ILE A 82 SHEET 1 B 5 THR B 28 THR B 32 0 SHEET 2 B 5 LYS B 4 VAL B 8 1 N ILE B 5 O THR B 28 SHEET 3 B 5 LEU B 49 ALA B 53 1 O VAL B 51 N VAL B 8 SHEET 4 B 5 ILE B 80 GLY B 84 1 O VAL B 81 N VAL B 50 SHEET 5 B 5 GLU B 101 ALA B 104 1 O VAL B 103 N ILE B 82 SHEET 1 C 5 THR C 28 THR C 32 0 SHEET 2 C 5 LYS C 4 VAL C 8 1 N ILE C 5 O THR C 28 SHEET 3 C 5 LEU C 49 ALA C 53 1 O VAL C 51 N VAL C 8 SHEET 4 C 5 ILE C 80 GLY C 84 1 O VAL C 81 N VAL C 50 SHEET 5 C 5 GLU C 101 ALA C 104 1 O VAL C 103 N ILE C 82 CISPEP 1 LYS A 105 PRO A 106 0 -0.68 CISPEP 2 LYS B 105 PRO B 106 0 -3.42 CISPEP 3 LYS C 105 PRO C 106 0 1.62 SITE 1 AC1 2 HOH A 368 HOH B 392 SITE 1 AC2 4 VAL B 54 ASP B 55 GLY B 84 LYS B 105 SITE 1 AC3 4 ASP C 55 GLY C 84 LYS C 105 HOH C 333 SITE 1 AC4 4 ASP A 55 GLY A 84 LYS A 105 HOH A 360 CRYST1 142.479 142.479 37.420 90.00 90.00 90.00 I 4 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007019 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026724 0.00000