HEADER    HYDROLASE                               30-AUG-06   2I74              
TITLE     CRYSTAL STRUCTURE OF MOUSE PEPTIDE N-GLYCANASE C-TERMINAL DOMAIN IN   
TITLE    2 COMPLEX WITH MANNOPENTAOSE                                           
CAVEAT     2I74    MAN D 1 HAS WRONG CHIRALITY AT ATOM C1                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PNGASE;                                                    
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 471-651;                       
COMPND   5 SYNONYM: PEPTIDE N-GLYCANASE;                                        
COMPND   6 EC: 3.5.1.52;                                                        
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 GENE: NGLY1;                                                         
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 CONDON PLUS RIL;                   
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET21B                                    
KEYWDS    BETA-SANDWICH, HYDROLASE                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    X.ZHOU,G.ZHAO,L.WANG,G.LI,W.J.LENNARZ,H.SCHINDELIN                    
REVDAT   7   30-AUG-23 2I74    1       HETSYN                                   
REVDAT   6   29-JUL-20 2I74    1       CAVEAT COMPND REMARK SEQADV              
REVDAT   6 2                   1       HETNAM LINK   SITE   ATOM                
REVDAT   5   18-OCT-17 2I74    1       REMARK                                   
REVDAT   4   13-JUL-11 2I74    1       VERSN                                    
REVDAT   3   24-FEB-09 2I74    1       VERSN                                    
REVDAT   2   28-NOV-06 2I74    1       JRNL                                     
REVDAT   1   24-OCT-06 2I74    0                                                
JRNL        AUTH   X.ZHOU,G.ZHAO,J.J.TRUGLIO,L.WANG,G.LI,W.J.LENNARZ,           
JRNL        AUTH 2 H.SCHINDELIN                                                 
JRNL        TITL   STRUCTURAL AND BIOCHEMICAL STUDIES OF THE C-TERMINAL DOMAIN  
JRNL        TITL 2 OF MOUSE PEPTIDE-N-GLYCANASE IDENTIFY IT AS A                
JRNL        TITL 3 MANNOSE-BINDING MODULE.                                      
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 103 17214 2006              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   17088551                                                     
JRNL        DOI    10.1073/PNAS.0602954103                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.75 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.2.0019                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 20.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 2.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 35851                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : NULL                            
REMARK   3   R VALUE            (WORKING SET) : 0.172                           
REMARK   3   FREE R VALUE                     : 0.208                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.200                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1856                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.75                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.80                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2401                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 96.90                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2100                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 128                          
REMARK   3   BIN FREE R VALUE                    : 0.2770                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2915                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 132                                     
REMARK   3   SOLVENT ATOMS            : 321                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   B VALUE TYPE : LIKELY RESIDUAL                                     
REMARK   3   FROM WILSON PLOT           (A**2) : 16.60                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 13.84                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 1.05000                                              
REMARK   3    B22 (A**2) : -0.59000                                             
REMARK   3    B33 (A**2) : -0.39000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.44000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.125         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.117         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.079         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.701         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.957                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.937                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3106 ; 0.015 ; 0.021       
REMARK   3   BOND LENGTHS OTHERS               (A):  2132 ; 0.001 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4185 ; 1.543 ; 1.970       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  5129 ; 1.668 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   358 ; 6.591 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   159 ;36.553 ;24.088       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   536 ;12.526 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    25 ;14.186 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   463 ; 0.125 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  3371 ; 0.007 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   654 ; 0.000 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   520 ; 0.215 ; 0.300       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  2277 ; 0.234 ; 0.300       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  1488 ; 0.181 ; 0.500       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  1701 ; 0.094 ; 0.500       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   447 ; 0.215 ; 0.500       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    16 ; 0.401 ; 0.300       
REMARK   3   SYMMETRY VDW OTHERS               (A):    53 ; 0.346 ; 0.300       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):    41 ; 0.221 ; 0.500       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2337 ; 1.127 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):   743 ; 0.251 ; 1.500       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  2864 ; 1.294 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1557 ; 2.309 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1321 ; 3.240 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 2                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   472        A   651                          
REMARK   3    ORIGIN FOR THE GROUP (A):  13.3227   0.3499  38.1889              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:  -0.0540 T22:  -0.0282                                     
REMARK   3      T33:  -0.0323 T12:  -0.0013                                     
REMARK   3      T13:  -0.0080 T23:   0.0132                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   1.0751 L22:   1.6480                                     
REMARK   3      L33:   1.4257 L12:   0.2093                                     
REMARK   3      L13:  -0.5466 L23:  -0.2815                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0429 S12:  -0.0191 S13:   0.0059                       
REMARK   3      S21:  -0.0664 S22:   0.0747 S23:   0.2070                       
REMARK   3      S31:   0.0871 S32:  -0.0811 S33:  -0.0317                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   B   472        B   651                          
REMARK   3    ORIGIN FOR THE GROUP (A):  15.8492  14.3249   7.8970              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:  -0.0544 T22:  -0.0649                                     
REMARK   3      T33:  -0.0670 T12:   0.0009                                     
REMARK   3      T13:   0.0068 T23:  -0.0007                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.9560 L22:   0.9460                                     
REMARK   3      L33:   0.9223 L12:  -0.0941                                     
REMARK   3      L13:   0.4318 L23:  -0.1952                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0168 S12:  -0.0143 S13:   0.0005                       
REMARK   3      S21:   0.0627 S22:   0.0226 S23:   0.0574                       
REMARK   3      S31:  -0.0800 S32:  -0.0110 S33:  -0.0058                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 2I74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000039220.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 10-AUG-06                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSLS                               
REMARK 200  BEAMLINE                       : X25                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97950                            
REMARK 200  MONOCHROMATOR                  : SI(111) DOUBLE CRYSTAL             
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000                    
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 35889                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.750                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 5.500                              
REMARK 200  R MERGE                    (I) : 0.08700                            
REMARK 200  R SYM                      (I) : 0.08700                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 20.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.81                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.50                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.44100                            
REMARK 200  R SYM FOR SHELL            (I) : 0.44100                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.300                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 2G9F                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 39.59                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 19 % PEG 4000, 11.5 % ISOPROPANOL, 0.1   
REMARK 280  M TRIS-HCL, PH 7.5, 0.2 M CALCIUM ACETATE, VAPOR DIFFUSION,         
REMARK 280  HANGING DROP, TEMPERATURE 291K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       20.82300            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     LEU A   471                                                      
REMARK 465     LEU A   652                                                      
REMARK 465     GLU A   653                                                      
REMARK 465     HIS A   654                                                      
REMARK 465     HIS A   655                                                      
REMARK 465     HIS A   656                                                      
REMARK 465     HIS A   657                                                      
REMARK 465     HIS A   658                                                      
REMARK 465     HIS A   659                                                      
REMARK 465     LEU B   471                                                      
REMARK 465     LEU B   652                                                      
REMARK 465     GLU B   653                                                      
REMARK 465     HIS B   654                                                      
REMARK 465     HIS B   655                                                      
REMARK 465     HIS B   656                                                      
REMARK 465     HIS B   657                                                      
REMARK 465     HIS B   658                                                      
REMARK 465     HIS B   659                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A 472    CB   CG   CD   OE1  OE2                             
REMARK 470     ARG A 473    CB   CG   CD   NE   CZ   NH1  NH2                   
REMARK 470     LYS A 474    CB   CG   CD   CE   NZ                              
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   OE2  GLU A   522     O1   GOL A    15              2.12            
REMARK 500   OG   SER B   565     OG   SER B   599              2.12            
REMARK 500   O    HOH A   253     O    HOH A   313              2.18            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH A    82     O    HOH A   268     2646     2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ARG A 473      104.14    147.50                                   
REMARK 500    TRP A 519      -78.09    -77.75                                   
REMARK 500    ASP A 562      -70.62   -101.50                                   
REMARK 500    GLU A 574     -129.63     47.93                                   
REMARK 500    ARG A 617     -154.45     64.52                                   
REMARK 500    TRP B 519      -78.12    -72.38                                   
REMARK 500    ASP B 562      -68.14   -103.31                                   
REMARK 500    GLU B 574     -130.70     49.57                                   
REMARK 500    ARG B 617     -152.11     64.55                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2G9F   RELATED DB: PDB                                   
REMARK 900 2G9F IS THE CRYSTAL STRUCTURE OF INTEIN-TAGGED MOUSE PNGASE C-       
REMARK 900 TERMINAL DOMAIN DETERMINED AT 1.90 ANGSTROM RESOLUTION               
REMARK 900 RELATED ID: 2G9G   RELATED DB: PDB                                   
REMARK 900 2G9G IS THE CRYSTAL STRUCTURE OF HIS-TAGGED MOUSE PNGASE C-TERMINAL  
REMARK 900 DOMAIN DETERMINED AT 2.00 ANGSTROM RESOLUTION                        
DBREF  2I74 A  471   651  UNP    Q9JI78   NGLY1_MOUSE    471    651             
DBREF  2I74 B  471   651  UNP    Q9JI78   NGLY1_MOUSE    471    651             
SEQADV 2I74 LEU A  652  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 GLU A  653  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS A  654  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS A  655  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS A  656  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS A  657  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS A  658  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS A  659  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 LEU B  652  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 GLU B  653  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS B  654  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS B  655  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS B  656  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS B  657  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS B  658  UNP  Q9JI78              CLONING ARTIFACT               
SEQADV 2I74 HIS B  659  UNP  Q9JI78              CLONING ARTIFACT               
SEQRES   1 A  189  LEU GLU ARG LYS GLU ILE LEU PHE ILE PRO SER GLU ASN          
SEQRES   2 A  189  GLU LYS ILE SER LYS GLN PHE HIS LEU ARG TYR ASP ILE          
SEQRES   3 A  189  VAL ARG ASP ARG TYR ILE ARG VAL SER ASP ASN ASN THR          
SEQRES   4 A  189  ASN ILE SER GLY TRP GLU ASN GLY VAL TRP LYS MET GLU          
SEQRES   5 A  189  SER ILE PHE ARG LYS VAL GLU LYS ASP TRP ASN MET VAL          
SEQRES   6 A  189  TYR LEU ALA ARG LYS GLU GLY SER SER PHE ALA TYR ILE          
SEQRES   7 A  189  SER TRP LYS PHE GLU CYS GLY SER ALA GLY LEU LYS VAL          
SEQRES   8 A  189  ASP THR VAL SER ILE ARG THR SER SER GLN SER PHE GLU          
SEQRES   9 A  189  SER GLY SER VAL ARG TRP LYS LEU ARG SER GLU THR ALA          
SEQRES  10 A  189  GLN VAL ASN LEU LEU GLY ASP LYS ASN LEU ARG SER TYR          
SEQRES  11 A  189  ASN ASP PHE SER GLY ALA THR GLU VAL THR LEU GLU ALA          
SEQRES  12 A  189  GLU LEU SER ARG GLY ASP GLY ASP VAL ALA TRP GLN HIS          
SEQRES  13 A  189  THR GLN LEU PHE ARG GLN SER LEU ASN ASP SER GLY GLU          
SEQRES  14 A  189  ASN GLY LEU GLU ILE ILE ILE THR PHE ASN ASP LEU LEU          
SEQRES  15 A  189  GLU HIS HIS HIS HIS HIS HIS                                  
SEQRES   1 B  189  LEU GLU ARG LYS GLU ILE LEU PHE ILE PRO SER GLU ASN          
SEQRES   2 B  189  GLU LYS ILE SER LYS GLN PHE HIS LEU ARG TYR ASP ILE          
SEQRES   3 B  189  VAL ARG ASP ARG TYR ILE ARG VAL SER ASP ASN ASN THR          
SEQRES   4 B  189  ASN ILE SER GLY TRP GLU ASN GLY VAL TRP LYS MET GLU          
SEQRES   5 B  189  SER ILE PHE ARG LYS VAL GLU LYS ASP TRP ASN MET VAL          
SEQRES   6 B  189  TYR LEU ALA ARG LYS GLU GLY SER SER PHE ALA TYR ILE          
SEQRES   7 B  189  SER TRP LYS PHE GLU CYS GLY SER ALA GLY LEU LYS VAL          
SEQRES   8 B  189  ASP THR VAL SER ILE ARG THR SER SER GLN SER PHE GLU          
SEQRES   9 B  189  SER GLY SER VAL ARG TRP LYS LEU ARG SER GLU THR ALA          
SEQRES  10 B  189  GLN VAL ASN LEU LEU GLY ASP LYS ASN LEU ARG SER TYR          
SEQRES  11 B  189  ASN ASP PHE SER GLY ALA THR GLU VAL THR LEU GLU ALA          
SEQRES  12 B  189  GLU LEU SER ARG GLY ASP GLY ASP VAL ALA TRP GLN HIS          
SEQRES  13 B  189  THR GLN LEU PHE ARG GLN SER LEU ASN ASP SER GLY GLU          
SEQRES  14 B  189  ASN GLY LEU GLU ILE ILE ILE THR PHE ASN ASP LEU LEU          
SEQRES  15 B  189  GLU HIS HIS HIS HIS HIS HIS                                  
HET    MAN  C   1      12                                                       
HET    MAN  C   2      11                                                       
HET    MAN  C   3      11                                                       
HET    MAN  C   4      11                                                       
HET    MAN  D   1      12                                                       
HET    MAN  D   2      11                                                       
HET    MAN  D   3      11                                                       
HET    MAN  D   4      11                                                       
HET    ACT  A   9       4                                                       
HET    ACT  A  11       4                                                       
HET    ACT  A  14       4                                                       
HET    GOL  A  15       6                                                       
HET    GOL  A  17       6                                                       
HET    ACT  B  10       4                                                       
HET    ACT  B  12       4                                                       
HET    ACT  B  13       4                                                       
HET    GOL  B  16       6                                                       
HETNAM     MAN ALPHA-D-MANNOPYRANOSE                                            
HETNAM     ACT ACETATE ION                                                      
HETNAM     GOL GLYCEROL                                                         
HETSYN     MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE                              
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   3  MAN    8(C6 H12 O6)                                                 
FORMUL   5  ACT    6(C2 H3 O2 1-)                                               
FORMUL   8  GOL    3(C3 H8 O3)                                                  
FORMUL  14  HOH   *321(H2 O)                                                    
HELIX    1   1 SER A  481  LYS A  488  1                                   8    
HELIX    2   2 TRP A  514  VAL A  518  5                                   5    
HELIX    3   3 GLY A  555  ALA A  557  5                                   3    
HELIX    4   4 ASP A  619  GLN A  625  5                                   7    
HELIX    5   5 SER B  481  LYS B  488  1                                   8    
HELIX    6   6 TRP B  514  VAL B  518  5                                   5    
HELIX    7   7 GLY B  555  ALA B  557  5                                   3    
HELIX    8   8 ASP B  619  GLN B  625  5                                   7    
SHEET    1   A 6 THR A 509  SER A 512  0                                        
SHEET    2   A 6 ARG A 500  ARG A 503 -1  N  TYR A 501   O  ILE A 511           
SHEET    3   A 6 GLN A 489  ASP A 495 -1  N  ASP A 495   O  ARG A 500           
SHEET    4   A 6 LEU A 642  ASP A 650 -1  O  ILE A 646   N  PHE A 490           
SHEET    5   A 6 LEU A 559  ARG A 567 -1  N  ASP A 562   O  THR A 647           
SHEET    6   A 6 ARG A 598  TYR A 600 -1  O  ARG A 598   N  ILE A 566           
SHEET    1   B 5 MET A 521  GLU A 522  0                                        
SHEET    2   B 5 PHE A 545  GLU A 553 -1  O  TYR A 547   N  GLU A 522           
SHEET    3   B 5 GLU A 608  SER A 616 -1  O  LEU A 611   N  TRP A 550           
SHEET    4   B 5 SER A 577  ARG A 583 -1  N  LYS A 581   O  GLU A 612           
SHEET    5   B 5 GLN A 588  LEU A 591 -1  O  VAL A 589   N  LEU A 582           
SHEET    1   C 4 ILE A 524  GLU A 529  0                                        
SHEET    2   C 4 MET A 534  ARG A 539 -1  O  TYR A 536   N  LYS A 527           
SHEET    3   C 4 THR A 627  SER A 633 -1  O  LEU A 629   N  LEU A 537           
SHEET    4   C 4 SER A 570  SER A 572 -1  N  GLN A 571   O  GLN A 628           
SHEET    1   D 8 THR B 509  SER B 512  0                                        
SHEET    2   D 8 ARG B 500  ARG B 503 -1  N  ARG B 503   O  THR B 509           
SHEET    3   D 8 GLN B 489  ASP B 495 -1  N  ASP B 495   O  ARG B 500           
SHEET    4   D 8 GLY B 641  ASP B 650 -1  O  ILE B 646   N  PHE B 490           
SHEET    5   D 8 LEU B 559  SER B 572 -1  N  ASP B 562   O  THR B 647           
SHEET    6   D 8 THR B 627  SER B 633 -1  O  GLN B 628   N  GLN B 571           
SHEET    7   D 8 MET B 534  ARG B 539 -1  N  LEU B 537   O  LEU B 629           
SHEET    8   D 8 ILE B 524  GLU B 529 -1  N  GLU B 529   O  MET B 534           
SHEET    1   E 6 THR B 509  SER B 512  0                                        
SHEET    2   E 6 ARG B 500  ARG B 503 -1  N  ARG B 503   O  THR B 509           
SHEET    3   E 6 GLN B 489  ASP B 495 -1  N  ASP B 495   O  ARG B 500           
SHEET    4   E 6 GLY B 641  ASP B 650 -1  O  ILE B 646   N  PHE B 490           
SHEET    5   E 6 LEU B 559  SER B 572 -1  N  ASP B 562   O  THR B 647           
SHEET    6   E 6 ASP B 594  TYR B 600 -1  O  LYS B 595   N  THR B 568           
SHEET    1   F 5 MET B 521  GLU B 522  0                                        
SHEET    2   F 5 PHE B 545  GLU B 553 -1  O  TYR B 547   N  GLU B 522           
SHEET    3   F 5 GLU B 608  SER B 616 -1  O  LEU B 611   N  TRP B 550           
SHEET    4   F 5 SER B 577  ARG B 583 -1  N  SER B 577   O  SER B 616           
SHEET    5   F 5 GLN B 588  LEU B 591 -1  O  VAL B 589   N  LEU B 582           
LINK         O6  MAN C   1                 C1  MAN C   2     1555   1555  1.45  
LINK         O3  MAN C   2                 C1  MAN C   3     1555   1555  1.43  
LINK         O6  MAN C   2                 C1  MAN C   4     1555   1555  1.44  
LINK         O6  MAN D   1                 C1  MAN D   2     1555   1555  1.44  
LINK         O3  MAN D   2                 C1  MAN D   3     1555   1555  1.44  
LINK         O6  MAN D   2                 C1  MAN D   4     1555   1555  1.42  
CRYST1   45.706   41.646   94.900  90.00  94.89  90.00 P 1 21 1      4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.021879  0.000000  0.001872        0.00000                         
SCALE2      0.000000  0.024012  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.010576        0.00000