HEADER HYDROLASE 30-AUG-06 2I7A TITLE DOMAIN IV OF HUMAN CALPAIN 13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALPAIN 13; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 515-669; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CAPN13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-LIC KEYWDS CALPAIN, CALCIUM-DEPENDENT CYTOPLASMIC CYSTEINE PROTEINASES, PAPAIN- KEYWDS 2 LIKE, EF-HAND, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,K.NG,T.L.DAVIS,R.RAVULAPALLI,C.BUTLER-COLE,P.J.FINERTY AUTHOR 2 JR.,E.M.NEWMAN,J.WEIGELT,M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 30-AUG-23 2I7A 1 REMARK SEQADV LINK REVDAT 5 24-JAN-18 2I7A 1 AUTHOR REVDAT 4 18-OCT-17 2I7A 1 REMARK REVDAT 3 13-JUL-11 2I7A 1 VERSN REVDAT 2 24-FEB-09 2I7A 1 VERSN REVDAT 1 12-SEP-06 2I7A 0 JRNL AUTH J.R.WALKER,K.NG,T.L.DAVIS,R.RAVULAPALLI,C.BUTLER-COLE, JRNL AUTH 2 P.J.FINERTY JR.,E.M.NEWMAN,J.WEIGELT,M.SUNDSTROM, JRNL AUTH 3 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON JRNL TITL STRUCTURE OF HUMAN CALPAIN 13 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 17908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 952 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : 1.60000 REMARK 3 B12 (A**2) : -0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.039 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1325 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1788 ; 1.496 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 4.877 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;29.486 ;23.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 245 ;12.187 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.322 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 201 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 958 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 616 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 918 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 96 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.063 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 813 ; 2.104 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1270 ; 2.668 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 581 ; 3.654 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 518 ; 4.868 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 507 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9760 21.9110 -14.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0358 REMARK 3 T33: -0.0084 T12: 0.0850 REMARK 3 T13: -0.0323 T23: -0.1317 REMARK 3 L TENSOR REMARK 3 L11: 5.4403 L22: 5.7797 REMARK 3 L33: 2.3780 L12: -1.6526 REMARK 3 L13: -1.2667 L23: -0.6972 REMARK 3 S TENSOR REMARK 3 S11: 0.2428 S12: 0.8913 S13: -0.7209 REMARK 3 S21: -0.7353 S22: -0.4121 S23: 0.0656 REMARK 3 S31: 0.1062 S32: -0.0096 S33: 0.1692 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 528 A 537 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4310 17.4190 -1.5270 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: -0.1439 REMARK 3 T33: 0.0979 T12: -0.0119 REMARK 3 T13: 0.0649 T23: 0.1002 REMARK 3 L TENSOR REMARK 3 L11: 18.7642 L22: 8.8470 REMARK 3 L33: 21.8470 L12: -12.1373 REMARK 3 L13: -10.7673 L23: 10.9155 REMARK 3 S TENSOR REMARK 3 S11: -1.1780 S12: -1.2188 S13: -1.6073 REMARK 3 S21: 1.2417 S22: 0.0808 S23: 1.3076 REMARK 3 S31: 1.6252 S32: 0.2752 S33: 1.0972 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 538 A 552 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3260 31.0650 -7.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0166 REMARK 3 T33: -0.0365 T12: 0.0391 REMARK 3 T13: 0.0077 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 6.8005 L22: 5.3607 REMARK 3 L33: 4.3207 L12: -0.3386 REMARK 3 L13: -1.4152 L23: -1.6806 REMARK 3 S TENSOR REMARK 3 S11: 0.3114 S12: 0.1902 S13: 0.0253 REMARK 3 S21: -0.0680 S22: -0.1589 S23: 0.2891 REMARK 3 S31: -0.1953 S32: 0.1250 S33: -0.1526 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 553 A 564 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6630 31.0060 -17.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.0642 T22: 0.1140 REMARK 3 T33: -0.1692 T12: 0.1198 REMARK 3 T13: 0.0536 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 12.2995 L22: 16.2026 REMARK 3 L33: 4.1398 L12: -9.9735 REMARK 3 L13: 2.4431 L23: -3.3291 REMARK 3 S TENSOR REMARK 3 S11: 0.6963 S12: 1.2534 S13: 0.0658 REMARK 3 S21: -1.0326 S22: -0.6977 S23: -0.0980 REMARK 3 S31: -0.2879 S32: 0.1134 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 565 A 572 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1320 24.9950 -6.9380 REMARK 3 T TENSOR REMARK 3 T11: -0.0315 T22: -0.0114 REMARK 3 T33: 0.0041 T12: 0.0239 REMARK 3 T13: 0.0332 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.9710 L22: 2.3180 REMARK 3 L33: 14.5876 L12: 0.1139 REMARK 3 L13: 1.1908 L23: 1.5287 REMARK 3 S TENSOR REMARK 3 S11: 0.1753 S12: 0.3027 S13: -0.0113 REMARK 3 S21: -0.2533 S22: 0.0611 S23: -0.2044 REMARK 3 S31: -0.1375 S32: 0.2038 S33: -0.2363 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 573 A 585 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7630 18.8000 5.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.0039 T22: -0.0686 REMARK 3 T33: -0.0060 T12: 0.0079 REMARK 3 T13: 0.0056 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 4.0278 L22: 6.0991 REMARK 3 L33: 12.6659 L12: -1.5340 REMARK 3 L13: -0.1938 L23: -2.6589 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.2643 S13: -0.5756 REMARK 3 S21: 0.1493 S22: 0.1743 S23: 0.3221 REMARK 3 S31: 0.9086 S32: -0.0669 S33: -0.1478 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 586 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0560 26.1040 11.1400 REMARK 3 T TENSOR REMARK 3 T11: -0.0327 T22: 0.0290 REMARK 3 T33: -0.0752 T12: 0.0435 REMARK 3 T13: -0.0202 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 7.0888 L22: 2.8306 REMARK 3 L33: 6.0425 L12: 0.4512 REMARK 3 L13: -2.3456 L23: -3.1671 REMARK 3 S TENSOR REMARK 3 S11: -0.2741 S12: -0.4508 S13: -0.1363 REMARK 3 S21: 0.2466 S22: 0.1189 S23: -0.1682 REMARK 3 S31: -0.1768 S32: -0.1829 S33: 0.1551 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 600 A 607 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8350 34.8590 2.8630 REMARK 3 T TENSOR REMARK 3 T11: -0.0733 T22: 0.0341 REMARK 3 T33: 0.0253 T12: 0.0117 REMARK 3 T13: -0.0317 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.9058 L22: 9.1422 REMARK 3 L33: 12.9053 L12: 0.3035 REMARK 3 L13: -1.3618 L23: 7.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.2873 S13: 0.0828 REMARK 3 S21: 0.0070 S22: 0.0778 S23: -0.6374 REMARK 3 S31: 0.0742 S32: 0.1554 S33: -0.1148 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 608 A 612 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7360 38.9880 14.7860 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: 0.0864 REMARK 3 T33: -0.0850 T12: 0.0136 REMARK 3 T13: -0.0581 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 22.6900 L22: 34.2749 REMARK 3 L33: 16.1350 L12: 5.6352 REMARK 3 L13: 4.3332 L23: 3.8605 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: -1.5120 S13: 0.4155 REMARK 3 S21: 0.9736 S22: 0.0787 S23: -0.1153 REMARK 3 S31: -0.2695 S32: -0.0418 S33: 0.0237 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 613 A 634 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0730 28.7110 9.0790 REMARK 3 T TENSOR REMARK 3 T11: -0.0295 T22: 0.0354 REMARK 3 T33: -0.0349 T12: 0.0139 REMARK 3 T13: -0.0039 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 3.5781 L22: 3.9864 REMARK 3 L33: 4.0066 L12: -1.8214 REMARK 3 L13: -0.4274 L23: 2.0920 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: -0.3875 S13: -0.3847 REMARK 3 S21: 0.3932 S22: 0.0733 S23: 0.2593 REMARK 3 S31: 0.1790 S32: -0.2142 S33: -0.0149 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 635 A 646 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1730 38.9910 -0.7070 REMARK 3 T TENSOR REMARK 3 T11: -0.0550 T22: -0.0167 REMARK 3 T33: 0.0193 T12: 0.0044 REMARK 3 T13: -0.0525 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.7947 L22: 11.6079 REMARK 3 L33: 4.1107 L12: -0.0805 REMARK 3 L13: -0.6280 L23: -2.1292 REMARK 3 S TENSOR REMARK 3 S11: -0.2347 S12: 0.2074 S13: 0.4306 REMARK 3 S21: 0.1010 S22: 0.1556 S23: -0.5105 REMARK 3 S31: -0.0741 S32: 0.0500 S33: 0.0790 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 647 A 658 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5620 52.4010 -2.0050 REMARK 3 T TENSOR REMARK 3 T11: -0.1085 T22: -0.0904 REMARK 3 T33: 0.2478 T12: -0.0672 REMARK 3 T13: -0.0507 T23: 0.0741 REMARK 3 L TENSOR REMARK 3 L11: 9.5595 L22: 4.7589 REMARK 3 L33: 3.1903 L12: -1.6667 REMARK 3 L13: 0.1663 L23: -2.6516 REMARK 3 S TENSOR REMARK 3 S11: -0.2688 S12: 0.1644 S13: 0.8855 REMARK 3 S21: 0.0384 S22: 0.1080 S23: -1.1592 REMARK 3 S31: -0.3438 S32: 0.0598 S33: 0.1608 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 659 A 669 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8770 47.0040 -5.8550 REMARK 3 T TENSOR REMARK 3 T11: -0.0832 T22: 0.0953 REMARK 3 T33: -0.0408 T12: -0.0322 REMARK 3 T13: -0.0286 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 2.9574 L22: 10.0675 REMARK 3 L33: 3.1600 L12: 0.8905 REMARK 3 L13: -0.4652 L23: 2.0098 REMARK 3 S TENSOR REMARK 3 S11: -0.1192 S12: 0.3342 S13: 0.3491 REMARK 3 S21: -0.2115 S22: 0.0306 S23: -0.3048 REMARK 3 S31: -0.0190 S32: 0.1878 S33: 0.0886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.88000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KFU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG4K, 0.2M NH4SO4, 0.1M NA-AC, 10 REMARK 280 MG/ML PROTEIN SOLUTION, CRYOPROTECTED WITH 25% GLYCEROL, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.61133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.80567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.80567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.61133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATION: Y, X, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 6 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 15 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 496 REMARK 465 GLY A 497 REMARK 465 SER A 498 REMARK 465 SER A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 SER A 506 REMARK 465 ARG A 512 REMARK 465 THR A 531 REMARK 465 GLY A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 GLY A 535 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 575 O HOH A 80 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 SO4 A 5 O HOH A 58 2654 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 555 11.90 -150.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 53 O REMARK 620 2 GLU A 551 OE1 162.8 REMARK 620 3 LYS A 553 O 99.4 75.4 REMARK 620 4 ASN A 555 OD1 88.0 75.3 85.4 REMARK 620 5 ARG A 557 O 105.2 76.4 150.5 79.6 REMARK 620 6 GLU A 562 OE1 75.9 120.8 124.3 147.7 78.0 REMARK 620 7 GLU A 562 OE2 95.3 99.4 77.3 162.8 115.6 48.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 DBREF 2I7A A 515 669 UNP Q17RF0 Q17RF0_HUMAN 515 669 SEQADV 2I7A MET A 496 UNP Q17RF0 INITIATING METHIONINE SEQADV 2I7A GLY A 497 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A SER A 498 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A SER A 499 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A HIS A 500 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 501 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 502 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 503 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 504 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 505 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A SER A 506 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A SER A 507 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A GLY A 508 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A LEU A 509 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A VAL A 510 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A PRO A 511 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A ARG A 512 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A GLY A 513 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A SER A 514 UNP Q17RF0 CLONING ARTIFACT SEQRES 1 A 174 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 174 LEU VAL PRO ARG GLY SER ASP ILE ASP ALA THR GLN LEU SEQRES 3 A 174 GLN GLY LEU LEU ASN GLN GLU LEU LEU THR GLY PRO PRO SEQRES 4 A 174 GLY ASP MET PHE SER LEU ASP GLU CYS ARG SER LEU VAL SEQRES 5 A 174 ALA LEU MET GLU LEU LYS VAL ASN GLY ARG LEU ASP GLN SEQRES 6 A 174 GLU GLU PHE ALA ARG LEU TRP LYS ARG LEU VAL HIS TYR SEQRES 7 A 174 GLN HIS VAL PHE GLN LYS VAL GLN THR SER PRO GLY VAL SEQRES 8 A 174 LEU LEU SER SER ASP LEU TRP LYS ALA ILE GLU ASN THR SEQRES 9 A 174 ASP PHE LEU ARG GLY ILE PHE ILE SER ARG GLU LEU LEU SEQRES 10 A 174 HIS LEU VAL THR LEU ARG TYR SER ASP SER VAL GLY ARG SEQRES 11 A 174 VAL SER PHE PRO SER LEU VAL CYS PHE LEU MET ARG LEU SEQRES 12 A 174 GLU ALA MET ALA LYS THR PHE ARG ASN LEU SER LYS ASP SEQRES 13 A 174 GLY LYS GLY LEU TYR LEU THR GLU MET GLU TRP MET SER SEQRES 14 A 174 LEU VAL MET TYR ASN HET CA A 2 1 HET SO4 A 3 5 HET SO4 A 4 5 HET SO4 A 5 5 HET SO4 A 6 5 HET GOL A 1 6 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *92(H2 O) HELIX 1 1 ALA A 518 LEU A 530 1 13 HELIX 2 2 SER A 539 GLU A 551 1 13 HELIX 3 3 ASP A 559 GLN A 581 1 23 HELIX 4 4 ASP A 591 ASN A 598 1 8 HELIX 5 5 THR A 599 ARG A 603 5 5 HELIX 6 6 SER A 608 SER A 620 1 13 HELIX 7 7 SER A 627 SER A 649 1 23 HELIX 8 8 THR A 658 TYR A 668 1 11 SHEET 1 A 2 ILE A 516 ASP A 517 0 SHEET 2 A 2 ARG A 557 LEU A 558 -1 O LEU A 558 N ILE A 516 SHEET 1 B 2 LEU A 587 LEU A 588 0 SHEET 2 B 2 ARG A 625 VAL A 626 -1 O VAL A 626 N LEU A 587 LINK CA CA A 2 O HOH A 53 1555 1555 2.41 LINK CA CA A 2 OE1 GLU A 551 1555 1555 2.50 LINK CA CA A 2 O LYS A 553 1555 1555 2.34 LINK CA CA A 2 OD1 ASN A 555 1555 1555 2.58 LINK CA CA A 2 O ARG A 557 1555 1555 2.35 LINK CA CA A 2 OE1 GLU A 562 1555 1555 2.60 LINK CA CA A 2 OE2 GLU A 562 1555 1555 2.69 SITE 1 AC1 6 HOH A 53 GLU A 551 LYS A 553 ASN A 555 SITE 2 AC1 6 ARG A 557 GLU A 562 SITE 1 AC2 8 HOH A 9 HOH A 19 HOH A 47 ASP A 536 SITE 2 AC2 8 LEU A 540 ARG A 544 SER A 627 SER A 630 SITE 1 AC3 2 ARG A 565 ARG A 569 SITE 1 AC4 4 HOH A 58 HOH A 81 HIS A 575 LYS A 579 SITE 1 AC5 3 HOH A 86 ASN A 555 ARG A 557 SITE 1 AC6 8 HOH A 80 HOH A 83 VAL A 571 GLN A 574 SITE 2 AC6 8 HIS A 575 GLN A 578 ILE A 607 LEU A 612 CRYST1 86.115 86.115 47.417 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011612 0.006704 0.000000 0.00000 SCALE2 0.000000 0.013409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021089 0.00000