HEADER TRANSFERASE 31-AUG-06 2I7N TITLE CRYSTAL STRUCTURE OF HUMAN PANK1 ALPHA: THE CATALYTIC CORE DOMAIN IN TITLE 2 COMPLEX WITH ACCOA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 234-593; COMPND 5 SYNONYM: PANTOTHENIC ACID KINASE 1, HPANK1, HPANK; COMPND 6 EC: 2.7.1.33; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PANK1, PANK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28ALIC KEYWDS PANK, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.S.HONG,L.WANG,W.TEMPEL,P.LOPPNAU,A.ALLALI-HASSANI,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.W.PARK REVDAT 4 21-FEB-24 2I7N 1 REMARK REVDAT 3 24-FEB-09 2I7N 1 VERSN REVDAT 2 04-NOV-08 2I7N 1 JRNL REVDAT 1 26-DEC-06 2I7N 0 JRNL AUTH B.S.HONG,G.SENISTERRA,W.M.RABEH,M.VEDADI,R.LEONARDI, JRNL AUTH 2 Y.M.ZHANG,C.O.ROCK,S.JACKOWSKI,H.W.PARK JRNL TITL CRYSTAL STRUCTURES OF HUMAN PANTOTHENATE KINASES. INSIGHTS JRNL TITL 2 INTO ALLOSTERIC REGULATION AND MUTATIONS LINKED TO A JRNL TITL 3 NEURODEGENERATION DISORDER. JRNL REF J.BIOL.CHEM. V. 282 27984 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17631502 JRNL DOI 10.1074/JBC.M701915200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 73380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3702 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9843 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 518 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5143 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 2.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000039239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-05; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : APS; NULL REMARK 200 BEAMLINE : 19-BM; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9; NULL REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR; ROSENBAUM-ROCK REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : SBC-3; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75175 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 47.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : 0.61000 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG400, 0.2M CACL, 0.1M NA HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.89100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 98.89100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 98.89100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 929 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 990 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 234 REMARK 465 PRO A 235 REMARK 465 ILE A 258 REMARK 465 THR A 259 REMARK 465 ALA A 260 REMARK 465 GLU A 261 REMARK 465 GLU A 262 REMARK 465 GLU A 263 REMARK 465 GLN A 264 REMARK 465 GLU A 265 REMARK 465 GLU A 266 REMARK 465 VAL A 267 REMARK 465 GLU A 268 REMARK 465 ASN A 269 REMARK 465 CYS A 301 REMARK 465 GLY A 302 REMARK 465 SER A 325 REMARK 465 GLU A 326 REMARK 465 LYS A 327 REMARK 465 ASN A 328 REMARK 465 PHE A 329 REMARK 465 SER A 330 REMARK 465 SER A 331 REMARK 465 LEU A 332 REMARK 465 HIS A 333 REMARK 465 THR A 334 REMARK 465 THR A 335 REMARK 465 LEU A 336 REMARK 465 ARG A 351 REMARK 465 MET A 352 REMARK 465 ILE A 353 REMARK 465 ALA A 354 REMARK 465 ASP A 355 REMARK 465 LEU A 356 REMARK 465 GLN A 357 REMARK 465 THR B 259 REMARK 465 ALA B 260 REMARK 465 GLU B 261 REMARK 465 GLU B 262 REMARK 465 GLU B 263 REMARK 465 GLN B 264 REMARK 465 GLU B 265 REMARK 465 GLU B 266 REMARK 465 VAL B 267 REMARK 465 GLU B 268 REMARK 465 ASN B 269 REMARK 465 LEU B 270 REMARK 465 CYS B 301 REMARK 465 GLY B 302 REMARK 465 GLY B 324 REMARK 465 SER B 325 REMARK 465 GLU B 326 REMARK 465 LYS B 327 REMARK 465 ASN B 328 REMARK 465 PHE B 329 REMARK 465 SER B 330 REMARK 465 SER B 331 REMARK 465 LEU B 332 REMARK 465 HIS B 333 REMARK 465 THR B 334 REMARK 465 THR B 335 REMARK 465 LEU B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C PHE B 236 CD PRO B 237 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 237 C - N - CA ANGL. DEV. = 20.6 DEGREES REMARK 500 PRO A 237 C - N - CD ANGL. DEV. = -33.6 DEGREES REMARK 500 PRO B 237 C - N - CA ANGL. DEV. = 60.0 DEGREES REMARK 500 PRO B 237 C - N - CD ANGL. DEV. = -52.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 237 129.94 3.91 REMARK 500 THR A 246 -71.95 -97.02 REMARK 500 LYS A 275 -66.00 -99.49 REMARK 500 ASP A 290 91.20 -59.07 REMARK 500 PHE A 346 19.67 -68.33 REMARK 500 PHE A 379 75.21 -116.88 REMARK 500 LEU A 404 54.81 -96.22 REMARK 500 ASP A 405 -81.32 -42.18 REMARK 500 THR A 434 -167.57 -177.54 REMARK 500 ILE A 551 -73.76 -94.14 REMARK 500 ASN A 552 -147.35 -105.21 REMARK 500 PHE A 592 26.67 -79.17 REMARK 500 PRO B 237 101.43 91.21 REMARK 500 THR B 246 -63.64 -131.04 REMARK 500 ASP B 257 93.46 59.02 REMARK 500 THR B 286 -45.65 -147.41 REMARK 500 ILE B 353 -86.07 -81.73 REMARK 500 ALA B 354 -147.73 -78.38 REMARK 500 LEU B 356 -101.62 -59.48 REMARK 500 PHE B 379 77.71 -112.02 REMARK 500 LEU B 404 64.33 -110.74 REMARK 500 THR B 434 -160.67 -169.47 REMARK 500 PHE B 592 26.04 -79.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ACO A 796 REMARK 610 ACO B 896 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 796 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO B 896 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I7P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PANK3 IN COMPLEX WITH FEEDBACK REGULATOR DBREF 2I7N A 234 593 UNP Q8TE04 PANK1_HUMAN 234 593 DBREF 2I7N B 234 593 UNP Q8TE04 PANK1_HUMAN 234 593 SEQRES 1 A 360 PRO PRO PHE PRO TRP PHE GLY MET ASP ILE GLY GLY THR SEQRES 2 A 360 LEU VAL LYS LEU VAL TYR PHE GLU PRO LYS ASP ILE THR SEQRES 3 A 360 ALA GLU GLU GLU GLN GLU GLU VAL GLU ASN LEU LYS SER SEQRES 4 A 360 ILE ARG LYS TYR LEU THR SER ASN THR ALA TYR GLY LYS SEQRES 5 A 360 THR GLY ILE ARG ASP VAL HIS LEU GLU LEU LYS ASN LEU SEQRES 6 A 360 THR MET CYS GLY ARG LYS GLY ASN LEU HIS PHE ILE ARG SEQRES 7 A 360 PHE PRO SER CYS ALA MET HIS ARG PHE ILE GLN MET GLY SEQRES 8 A 360 SER GLU LYS ASN PHE SER SER LEU HIS THR THR LEU CYS SEQRES 9 A 360 ALA THR GLY GLY GLY ALA PHE LYS PHE GLU GLU ASP PHE SEQRES 10 A 360 ARG MET ILE ALA ASP LEU GLN LEU HIS LYS LEU ASP GLU SEQRES 11 A 360 LEU ASP CYS LEU ILE GLN GLY LEU LEU TYR VAL ASP SER SEQRES 12 A 360 VAL GLY PHE ASN GLY LYS PRO GLU CYS TYR TYR PHE GLU SEQRES 13 A 360 ASN PRO THR ASN PRO GLU LEU CYS GLN LYS LYS PRO TYR SEQRES 14 A 360 CYS LEU ASP ASN PRO TYR PRO MET LEU LEU VAL ASN MET SEQRES 15 A 360 GLY SER GLY VAL SER ILE LEU ALA VAL TYR SER LYS ASP SEQRES 16 A 360 ASN TYR LYS ARG VAL THR GLY THR SER LEU GLY GLY GLY SEQRES 17 A 360 THR PHE LEU GLY LEU CYS CYS LEU LEU THR GLY CYS GLU SEQRES 18 A 360 THR PHE GLU GLU ALA LEU GLU MET ALA ALA LYS GLY ASP SEQRES 19 A 360 SER THR ASN VAL ASP LYS LEU VAL LYS ASP ILE TYR GLY SEQRES 20 A 360 GLY ASP TYR GLU ARG PHE GLY LEU GLN GLY SER ALA VAL SEQRES 21 A 360 ALA SER SER PHE GLY ASN MET MET SER LYS GLU LYS ARG SEQRES 22 A 360 ASP SER ILE SER LYS GLU ASP LEU ALA ARG ALA THR LEU SEQRES 23 A 360 VAL THR ILE THR ASN ASN ILE GLY SER ILE ALA ARG MET SEQRES 24 A 360 CYS ALA LEU ASN GLU ASN ILE ASP ARG VAL VAL PHE VAL SEQRES 25 A 360 GLY ASN PHE LEU ARG ILE ASN MET VAL SER MET LYS LEU SEQRES 26 A 360 LEU ALA TYR ALA MET ASP PHE TRP SER LYS GLY GLN LEU SEQRES 27 A 360 LYS ALA LEU PHE LEU GLU HIS GLU GLY TYR PHE GLY ALA SEQRES 28 A 360 VAL GLY ALA LEU LEU GLU LEU PHE LYS SEQRES 1 B 360 PRO PRO PHE PRO TRP PHE GLY MET ASP ILE GLY GLY THR SEQRES 2 B 360 LEU VAL LYS LEU VAL TYR PHE GLU PRO LYS ASP ILE THR SEQRES 3 B 360 ALA GLU GLU GLU GLN GLU GLU VAL GLU ASN LEU LYS SER SEQRES 4 B 360 ILE ARG LYS TYR LEU THR SER ASN THR ALA TYR GLY LYS SEQRES 5 B 360 THR GLY ILE ARG ASP VAL HIS LEU GLU LEU LYS ASN LEU SEQRES 6 B 360 THR MET CYS GLY ARG LYS GLY ASN LEU HIS PHE ILE ARG SEQRES 7 B 360 PHE PRO SER CYS ALA MET HIS ARG PHE ILE GLN MET GLY SEQRES 8 B 360 SER GLU LYS ASN PHE SER SER LEU HIS THR THR LEU CYS SEQRES 9 B 360 ALA THR GLY GLY GLY ALA PHE LYS PHE GLU GLU ASP PHE SEQRES 10 B 360 ARG MET ILE ALA ASP LEU GLN LEU HIS LYS LEU ASP GLU SEQRES 11 B 360 LEU ASP CYS LEU ILE GLN GLY LEU LEU TYR VAL ASP SER SEQRES 12 B 360 VAL GLY PHE ASN GLY LYS PRO GLU CYS TYR TYR PHE GLU SEQRES 13 B 360 ASN PRO THR ASN PRO GLU LEU CYS GLN LYS LYS PRO TYR SEQRES 14 B 360 CYS LEU ASP ASN PRO TYR PRO MET LEU LEU VAL ASN MET SEQRES 15 B 360 GLY SER GLY VAL SER ILE LEU ALA VAL TYR SER LYS ASP SEQRES 16 B 360 ASN TYR LYS ARG VAL THR GLY THR SER LEU GLY GLY GLY SEQRES 17 B 360 THR PHE LEU GLY LEU CYS CYS LEU LEU THR GLY CYS GLU SEQRES 18 B 360 THR PHE GLU GLU ALA LEU GLU MET ALA ALA LYS GLY ASP SEQRES 19 B 360 SER THR ASN VAL ASP LYS LEU VAL LYS ASP ILE TYR GLY SEQRES 20 B 360 GLY ASP TYR GLU ARG PHE GLY LEU GLN GLY SER ALA VAL SEQRES 21 B 360 ALA SER SER PHE GLY ASN MET MET SER LYS GLU LYS ARG SEQRES 22 B 360 ASP SER ILE SER LYS GLU ASP LEU ALA ARG ALA THR LEU SEQRES 23 B 360 VAL THR ILE THR ASN ASN ILE GLY SER ILE ALA ARG MET SEQRES 24 B 360 CYS ALA LEU ASN GLU ASN ILE ASP ARG VAL VAL PHE VAL SEQRES 25 B 360 GLY ASN PHE LEU ARG ILE ASN MET VAL SER MET LYS LEU SEQRES 26 B 360 LEU ALA TYR ALA MET ASP PHE TRP SER LYS GLY GLN LEU SEQRES 27 B 360 LYS ALA LEU PHE LEU GLU HIS GLU GLY TYR PHE GLY ALA SEQRES 28 B 360 VAL GLY ALA LEU LEU GLU LEU PHE LYS HET ACO A 796 29 HET ACO B 896 29 HETNAM ACO ACETYL COENZYME *A FORMUL 3 ACO 2(C23 H38 N7 O17 P3 S) FORMUL 5 HOH *252(H2 O) HELIX 1 1 SER A 272 ASN A 280 1 9 HELIX 2 2 VAL A 291 GLU A 294 5 4 HELIX 3 3 ALA A 316 GLY A 324 1 9 HELIX 4 4 PHE A 344 GLU A 348 5 5 HELIX 5 5 ASP A 362 GLY A 378 1 17 HELIX 6 6 GLY A 439 GLY A 452 1 14 HELIX 7 7 THR A 455 GLY A 466 1 12 HELIX 8 8 ASP A 467 VAL A 471 5 5 HELIX 9 9 VAL A 475 GLY A 480 1 6 HELIX 10 10 TYR A 483 GLY A 487 5 5 HELIX 11 11 SER A 502 ASP A 507 1 6 HELIX 12 12 SER A 510 ASN A 538 1 29 HELIX 13 13 GLY A 546 ARG A 550 5 5 HELIX 14 14 MET A 553 SER A 567 1 15 HELIX 15 15 TYR A 581 PHE A 592 1 12 HELIX 16 16 LYS B 271 SER B 279 1 9 HELIX 17 17 VAL B 291 GLU B 294 5 4 HELIX 18 18 ALA B 316 MET B 323 1 8 HELIX 19 19 GLY B 341 PHE B 346 1 6 HELIX 20 20 GLU B 348 ILE B 353 1 6 HELIX 21 21 ASP B 362 GLY B 378 1 17 HELIX 22 22 GLY B 439 GLY B 452 1 14 HELIX 23 23 THR B 455 GLY B 466 1 12 HELIX 24 24 ASP B 467 VAL B 471 5 5 HELIX 25 25 VAL B 475 GLY B 480 1 6 HELIX 26 26 TYR B 483 GLY B 487 5 5 HELIX 27 27 SER B 502 ASP B 507 1 6 HELIX 28 28 SER B 510 ASN B 538 1 29 HELIX 29 29 GLY B 546 ARG B 550 5 5 HELIX 30 30 MET B 553 LYS B 568 1 16 HELIX 31 31 TYR B 581 PHE B 592 1 12 SHEET 1 A 3 ILE A 288 ARG A 289 0 SHEET 2 A 3 GLY A 305 PRO A 313 -1 O ARG A 311 N ILE A 288 SHEET 3 A 3 LEU A 295 LEU A 298 -1 N LEU A 298 O GLY A 305 SHEET 1 B 5 ILE A 288 ARG A 289 0 SHEET 2 B 5 GLY A 305 PRO A 313 -1 O ARG A 311 N ILE A 288 SHEET 3 B 5 LEU A 247 PRO A 255 -1 N LEU A 250 O ILE A 310 SHEET 4 B 5 TRP A 238 ILE A 243 -1 N GLY A 240 O VAL A 251 SHEET 5 B 5 ALA A 338 THR A 339 1 O THR A 339 N ILE A 243 SHEET 1 C 7 GLN A 398 TYR A 402 0 SHEET 2 C 7 CYS A 385 GLU A 389 -1 N TYR A 387 O LYS A 400 SHEET 3 C 7 ALA A 573 LEU A 576 -1 O PHE A 575 N TYR A 386 SHEET 4 C 7 VAL A 542 VAL A 545 1 N PHE A 544 O LEU A 574 SHEET 5 C 7 MET A 410 MET A 415 1 N VAL A 413 O VAL A 543 SHEET 6 C 7 VAL A 419 SER A 426 -1 O VAL A 424 N MET A 410 SHEET 7 C 7 ASN A 429 THR A 436 -1 O THR A 434 N ILE A 421 SHEET 1 D 2 LYS A 473 LEU A 474 0 SHEET 2 D 2 VAL A 493 SER A 495 -1 O SER A 495 N LYS A 473 SHEET 1 E 4 ALA B 282 TYR B 283 0 SHEET 2 E 4 GLY B 287 ARG B 289 -1 N GLY B 287 O TYR B 283 SHEET 3 E 4 GLY B 305 PRO B 313 -1 O ARG B 311 N ILE B 288 SHEET 4 E 4 LEU B 295 LEU B 298 -1 N LEU B 298 O GLY B 305 SHEET 1 F 6 ALA B 282 TYR B 283 0 SHEET 2 F 6 GLY B 287 ARG B 289 -1 N GLY B 287 O TYR B 283 SHEET 3 F 6 GLY B 305 PRO B 313 -1 O ARG B 311 N ILE B 288 SHEET 4 F 6 LEU B 247 PRO B 255 -1 N LEU B 250 O ILE B 310 SHEET 5 F 6 TRP B 238 ILE B 243 -1 N ASP B 242 O LYS B 249 SHEET 6 F 6 ALA B 338 THR B 339 1 O THR B 339 N ILE B 243 SHEET 1 G 7 GLN B 398 PRO B 401 0 SHEET 2 G 7 CYS B 385 GLU B 389 -1 N TYR B 387 O LYS B 400 SHEET 3 G 7 ALA B 573 LEU B 576 -1 O PHE B 575 N TYR B 386 SHEET 4 G 7 VAL B 542 VAL B 545 1 N PHE B 544 O LEU B 574 SHEET 5 G 7 MET B 410 MET B 415 1 N VAL B 413 O VAL B 543 SHEET 6 G 7 VAL B 419 SER B 426 -1 O LEU B 422 N LEU B 412 SHEET 7 G 7 ASN B 429 THR B 436 -1 O VAL B 433 N ILE B 421 SHEET 1 H 2 LYS B 473 LEU B 474 0 SHEET 2 H 2 VAL B 493 SER B 495 -1 O SER B 495 N LYS B 473 CISPEP 1 TYR A 408 PRO A 409 0 -0.17 CISPEP 2 TYR B 408 PRO B 409 0 0.06 SITE 1 AC1 17 GLY A 416 SER A 417 GLY A 418 VAL A 419 SITE 2 AC1 17 SER A 420 ARG A 432 THR A 436 HOH A 807 SITE 3 AC1 17 HOH A 809 HOH A 873 TYR B 479 ALA B 492 SITE 4 AC1 17 VAL B 493 ALA B 494 ASN B 524 PHE B 565 SITE 5 AC1 17 TRP B 566 SITE 1 AC2 16 ALA A 492 VAL A 493 ALA A 494 ASN A 524 SITE 2 AC2 16 TYR A 561 PHE A 565 TRP A 566 GLY B 416 SITE 3 AC2 16 SER B 417 GLY B 418 VAL B 419 SER B 420 SITE 4 AC2 16 ARG B 432 THR B 436 HOH B 924 HOH B1018 CRYST1 92.989 92.989 197.782 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010754 0.006209 0.000000 0.00000 SCALE2 0.000000 0.012418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005056 0.00000