HEADER OXIDOREDUCTASE 05-SEP-06 2I9H TITLE NMR SOLUTION STRUCTURE OF THE REDUCED FORM OF THIOREDOXIN 1 FROM YEAST TITLE 2 (TRX1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THIOREDOXIN ISOFORM 1, TR-I, THIOREDOXIN 2,; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: TRX1, TRX2, YLR043C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS THIOREDOXIN, YEAST, OXIREDUCTASE, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.S.PINHEIRO,G.C.AMORIM,F.C.L.ALMEIDA,A.P.VALENTE REVDAT 6 08-MAY-24 2I9H 1 REMARK REVDAT 5 14-JUN-23 2I9H 1 REMARK REVDAT 4 19-FEB-20 2I9H 1 REMARK REVDAT 3 24-FEB-09 2I9H 1 VERSN REVDAT 2 19-FEB-08 2I9H 1 JRNL REVDAT 1 17-JUL-07 2I9H 0 JRNL AUTH A.S.PINHEIRO,G.C.AMORIM,L.E.NETTO,F.C.ALMEIDA,A.P.VALENTE JRNL TITL NMR SOLUTION STRUCTURE OF THE REDUCED FORM OF THIOREDOXIN 1 JRNL TITL 2 FROM SACHAROMYCES CEREVISIAE JRNL REF PROTEINS V. 70 584 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 17932921 JRNL DOI 10.1002/PROT.21693 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.S.PINHEIRO,G.C.AMORIM,L.E.NETTO,F.C.ALMEIDA,A.P.VALENTE REMARK 1 TITL (1)H, (13)C AND (15)N RESONANCE ASSIGNMENTS FOR THE REDUCED REMARK 1 TITL 2 FORMS OF THIOREDOXIN 1 AND 2 FROM S. CEREVISIAE REMARK 1 REF J.BIOMOL.NMR 2006 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 16609834 REMARK 1 DOI 10.1007/S10858-006-0025-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER (CNS), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CARTESIAN SIMULATED ANNEALING REMARK 4 REMARK 4 2I9H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039305. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 20 MM PHOSPHATE; 20 MM REMARK 210 PHOSPHATE; 20 MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 13C/15N UNIFORMLY LABELED, 20MM REMARK 210 PHOSPHATE BUFFER PH 7.0, DTT REMARK 210 10MM, SODIUM AZIDE 3MM; 90% H2O, REMARK 210 10% D2O; 15N UNIFORMLY LABELED, REMARK 210 20MM PHOSPHATE BUFFER PH 7.0, REMARK 210 DTT 10MM, SODIUM AZIDE 3MM; 90% REMARK 210 H2O, 10% D2O; UNLABELED, 20MM REMARK 210 PHOSPHATE BUFFER PH 7.0, DTT REMARK 210 10MM, SODIUM AZIDE 3MM; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY; HNCA- REMARK 210 J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 10 -64.94 -90.42 REMARK 500 1 ALA A 16 95.43 -40.74 REMARK 500 1 GLN A 17 86.66 44.35 REMARK 500 1 ASP A 18 41.14 -169.54 REMARK 500 1 LYS A 19 -155.41 67.56 REMARK 500 1 PHE A 25 51.60 -98.98 REMARK 500 1 TRP A 29 -128.74 -106.61 REMARK 500 1 CYS A 30 156.08 61.08 REMARK 500 1 ALA A 71 -157.90 -60.90 REMARK 500 1 MET A 72 88.19 -169.75 REMARK 500 1 LYS A 82 -160.82 -127.33 REMARK 500 1 VAL A 84 -47.04 -162.38 REMARK 500 1 VAL A 88 98.04 -62.33 REMARK 500 1 ALA A 90 37.13 -95.68 REMARK 500 1 PRO A 92 86.61 -45.91 REMARK 500 1 ALA A 93 -36.80 178.51 REMARK 500 1 ILE A 95 -18.44 -49.94 REMARK 500 1 ALA A 100 -69.39 -90.26 REMARK 500 2 VAL A 2 131.86 52.03 REMARK 500 2 ALA A 16 103.74 -46.29 REMARK 500 2 GLN A 17 87.45 44.01 REMARK 500 2 ASP A 18 40.67 -168.84 REMARK 500 2 LYS A 19 -156.88 64.33 REMARK 500 2 PHE A 25 48.69 -98.89 REMARK 500 2 TRP A 29 -38.71 -141.76 REMARK 500 2 PRO A 48 -32.32 -37.74 REMARK 500 2 VAL A 69 68.99 -115.25 REMARK 500 2 ALA A 71 -166.53 -57.56 REMARK 500 2 MET A 72 107.43 -174.43 REMARK 500 2 LYS A 82 -153.55 -115.57 REMARK 500 2 VAL A 84 -59.82 -144.00 REMARK 500 2 VAL A 88 85.67 -59.64 REMARK 500 2 ALA A 94 -62.02 -152.39 REMARK 500 2 ILE A 95 -5.45 -58.17 REMARK 500 2 ALA A 100 -77.69 -90.64 REMARK 500 3 ALA A 16 97.23 -43.14 REMARK 500 3 GLN A 17 88.86 45.35 REMARK 500 3 ASP A 18 39.83 -170.00 REMARK 500 3 LYS A 19 -154.35 68.18 REMARK 500 3 PHE A 25 50.88 -98.90 REMARK 500 3 CYS A 30 -75.19 -28.51 REMARK 500 3 LEU A 60 -69.08 -104.74 REMARK 500 3 VAL A 69 69.12 -114.75 REMARK 500 3 ALA A 71 -172.07 -55.32 REMARK 500 3 MET A 72 107.57 -171.59 REMARK 500 3 LYS A 82 -158.86 -122.12 REMARK 500 3 VAL A 84 -46.17 -165.01 REMARK 500 3 VAL A 88 97.87 -66.78 REMARK 500 3 ALA A 90 35.87 -96.98 REMARK 500 3 PRO A 92 87.34 -44.79 REMARK 500 REMARK 500 THIS ENTRY HAS 367 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6912 RELATED DB: BMRB DBREF 2I9H A 1 103 UNP P22217 TRX1_YEAST 0 102 SEQRES 1 A 103 MET VAL THR GLN PHE LYS THR ALA SER GLU PHE ASP SER SEQRES 2 A 103 ALA ILE ALA GLN ASP LYS LEU VAL VAL VAL ASP PHE TYR SEQRES 3 A 103 ALA THR TRP CYS GLY PRO CYS LYS MET ILE ALA PRO MET SEQRES 4 A 103 ILE GLU LYS PHE SER GLU GLN TYR PRO GLN ALA ASP PHE SEQRES 5 A 103 TYR LYS LEU ASP VAL ASP GLU LEU GLY ASP VAL ALA GLN SEQRES 6 A 103 LYS ASN GLU VAL SER ALA MET PRO THR LEU LEU LEU PHE SEQRES 7 A 103 LYS ASN GLY LYS GLU VAL ALA LYS VAL VAL GLY ALA ASN SEQRES 8 A 103 PRO ALA ALA ILE LYS GLN ALA ILE ALA ALA ASN ALA HELIX 1 1 THR A 7 ALA A 16 1 10 HELIX 2 2 MET A 35 PHE A 43 1 9 HELIX 3 3 SER A 44 GLN A 46 5 3 HELIX 4 4 LEU A 60 ASN A 67 1 8 SHEET 1 A 3 LEU A 20 ASP A 24 0 SHEET 2 A 3 LEU A 75 LYS A 79 -1 O LEU A 76 N VAL A 23 SHEET 3 A 3 ALA A 85 LYS A 86 -1 O ALA A 85 N LEU A 77 CISPEP 1 MET A 72 PRO A 73 1 -0.20 CISPEP 2 MET A 72 PRO A 73 2 -0.44 CISPEP 3 MET A 72 PRO A 73 3 -0.31 CISPEP 4 MET A 72 PRO A 73 4 0.21 CISPEP 5 MET A 72 PRO A 73 5 -0.90 CISPEP 6 MET A 72 PRO A 73 6 -0.19 CISPEP 7 MET A 72 PRO A 73 7 -0.51 CISPEP 8 MET A 72 PRO A 73 8 -0.30 CISPEP 9 MET A 72 PRO A 73 9 -0.37 CISPEP 10 MET A 72 PRO A 73 10 0.01 CISPEP 11 MET A 72 PRO A 73 11 -0.21 CISPEP 12 MET A 72 PRO A 73 12 -0.22 CISPEP 13 MET A 72 PRO A 73 13 -0.52 CISPEP 14 MET A 72 PRO A 73 14 -0.48 CISPEP 15 MET A 72 PRO A 73 15 -0.34 CISPEP 16 MET A 72 PRO A 73 16 -0.27 CISPEP 17 MET A 72 PRO A 73 17 -0.68 CISPEP 18 MET A 72 PRO A 73 18 -0.88 CISPEP 19 MET A 72 PRO A 73 19 -0.11 CISPEP 20 MET A 72 PRO A 73 20 -0.38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 166 0 0 4 3 0 0 6 788 1 0 8 END