HEADER METAL BINDING PROTEIN 06-SEP-06 2I9W TITLE CRYSTAL STRUCTURE OF A SEC-C MOTIF CONTAINING PROTEIN (PSYC_2064) FROM TITLE 2 PSYCHROBACTER ARCTICUS AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSYCHROBACTER ARCTICUS; SOURCE 3 ORGANISM_TAXID: 334543; SOURCE 4 GENE: YP_265345.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CYSTATIN-LIKE FOLD, SEC-C MOTIF FOLD, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2I9W 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 2I9W 1 REMARK REVDAT 5 18-OCT-17 2I9W 1 REMARK REVDAT 4 13-JUL-11 2I9W 1 VERSN REVDAT 3 23-MAR-11 2I9W 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2I9W 1 VERSN REVDAT 1 19-SEP-06 2I9W 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (YP_265345.1) FROM JRNL TITL 2 PSYCHROBACTER ARCTICUM 273-4 AT 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 19707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.60000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : -1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.648 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1429 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 940 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1950 ; 1.522 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2307 ; 0.903 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 180 ; 5.811 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;37.610 ;24.068 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 230 ;13.377 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 7.590 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 220 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1586 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 284 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 249 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 905 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 680 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 699 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 79 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.289 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 34 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.125 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 967 ; 2.096 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 352 ; 0.505 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1454 ; 2.978 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 593 ; 4.796 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 493 ; 6.423 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8959 11.0248 22.1427 REMARK 3 T TENSOR REMARK 3 T11: -0.0468 T22: -0.0294 REMARK 3 T33: -0.0195 T12: -0.0608 REMARK 3 T13: -0.0285 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.7903 L22: 3.2400 REMARK 3 L33: 3.0368 L12: -0.3320 REMARK 3 L13: -0.2126 L23: 0.3876 REMARK 3 S TENSOR REMARK 3 S11: 0.1472 S12: 0.0039 S13: -0.1117 REMARK 3 S21: 0.1111 S22: -0.0837 S23: -0.2089 REMARK 3 S31: 0.2460 S32: -0.1805 S33: -0.0635 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6595 23.6128 16.2532 REMARK 3 T TENSOR REMARK 3 T11: -0.1175 T22: -0.0676 REMARK 3 T33: -0.0286 T12: -0.0064 REMARK 3 T13: -0.0072 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.1208 L22: 2.2314 REMARK 3 L33: 3.1129 L12: -0.2910 REMARK 3 L13: 0.5634 L23: -0.3807 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: 0.0164 S13: 0.0223 REMARK 3 S21: -0.0065 S22: -0.0886 S23: -0.2232 REMARK 3 S31: -0.0951 S32: 0.0708 S33: -0.0012 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5322 28.4246 17.2520 REMARK 3 T TENSOR REMARK 3 T11: -0.1549 T22: -0.0413 REMARK 3 T33: -0.0551 T12: 0.0155 REMARK 3 T13: 0.0079 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.3253 L22: 3.3019 REMARK 3 L33: 13.6996 L12: 0.6989 REMARK 3 L13: 4.4883 L23: -0.2022 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: 0.1600 S13: -0.0098 REMARK 3 S21: 0.0529 S22: 0.0097 S23: -0.1044 REMARK 3 S31: -0.3371 S32: 0.3062 S33: -0.0626 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5745 35.1568 3.5860 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: -0.0821 REMARK 3 T33: -0.0789 T12: 0.0175 REMARK 3 T13: -0.0015 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.5283 L22: 1.6295 REMARK 3 L33: 4.8341 L12: -0.3660 REMARK 3 L13: -0.0553 L23: -1.6871 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.0605 S13: 0.0431 REMARK 3 S21: -0.0723 S22: -0.0305 S23: -0.0006 REMARK 3 S31: -0.6592 S32: 0.0035 S33: 0.0598 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 (1) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 (2) ZN200 IS COORDINATED TO THE SIDE CHAINS OF REMARK 3 CYS 8, 10, 28 AND 29. ZN201 IS COORDINATED TO THE REMARK 3 SIDE CHAINS OF CYS 167, 169, 178 AND 179. ZN IS REMARK 3 MODELED BASED ON ELECTRON DENSITY AND GEOMETRY, REMARK 3 AND IS SUPPORTED BY X-RAY FLOURESCENCE EXPERIMENTS. REMARK 3 (3) A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 (4) ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 (5) THE RESIDUES IN THE DISORDERED REGIONS OF A40-45 REMARK 3 WERE NOT MODELLED. REMARK 3 (6) THERE ARE UNMODELED DENSITIES NEAR A132 AND A56. REMARK 4 REMARK 4 2I9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94926,0.97939,0.97925 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.501 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 20.0% PEG-8000, 0.1M TRIS, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.74500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.94000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.34500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.94000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.74500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.34500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A MONOMER AS A BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 40 REMARK 465 VAL A 41 REMARK 465 GLU A 42 REMARK 465 ASP A 43 REMARK 465 SER A 44 REMARK 465 ASP A 45 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 39 CD OE1 NE2 REMARK 470 ARG A 48 NE CZ NH1 NH2 REMARK 470 ASP A 50 OD1 OD2 REMARK 470 LYS A 73 CE NZ REMARK 470 LYS A 86 NZ REMARK 470 LYS A 93 CE NZ REMARK 470 LYS A 108 CE NZ REMARK 470 LYS A 111 CD CE NZ REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 139 NZ REMARK 470 LYS A 141 CD CE NZ REMARK 470 ASN A 142 CG OD1 ND2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 ASN A 145 CG OD1 ND2 REMARK 470 ASP A 147 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 28 -94.35 -130.85 REMARK 500 VAL A 66 63.65 64.83 REMARK 500 LYS A 67 71.83 -119.75 REMARK 500 LEU A 76 122.93 -36.72 REMARK 500 LYS A 143 44.90 -97.55 REMARK 500 ALA A 144 -31.22 -148.57 REMARK 500 CYS A 178 -116.63 -141.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 8 SG REMARK 620 2 CYS A 10 SG 122.1 REMARK 620 3 CYS A 28 SG 110.6 98.1 REMARK 620 4 CYS A 29 SG 99.6 107.3 120.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 167 SG REMARK 620 2 CYS A 169 SG 111.8 REMARK 620 3 CYS A 178 SG 105.6 104.6 REMARK 620 4 CYS A 179 SG 104.0 109.8 121.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 368209 RELATED DB: TARGETDB DBREF 2I9W A 1 183 UNP Q4FPZ7 Q4FPZ7_PSYAR 1 183 SEQADV 2I9W GLY A 0 UNP Q4FPZ7 EXPRESSION TAG SEQADV 2I9W MSE A 1 UNP Q4FPZ7 MET 1 MODIFIED RESIDUE SEQADV 2I9W MSE A 56 UNP Q4FPZ7 MET 56 MODIFIED RESIDUE SEQADV 2I9W MSE A 159 UNP Q4FPZ7 MET 159 MODIFIED RESIDUE SEQADV 2I9W MSE A 181 UNP Q4FPZ7 MET 181 MODIFIED RESIDUE SEQRES 1 A 184 GLY MSE LEU PHE SER ILE GLN THR CYS PRO CYS GLN ILE SEQRES 2 A 184 ASN PRO ALA LEU ASN ALA VAL SER THR PRO LEU LEU TYR SEQRES 3 A 184 GLN ASP CYS CYS GLN PRO TYR HIS ASP GLY LEU TYR ASN SEQRES 4 A 184 GLN GLU VAL GLU ASP SER ASP ALA ILE ARG ALA ASP THR SEQRES 5 A 184 ALA GLU HIS LEU MSE ARG THR ARG TYR SER ALA PHE VAL SEQRES 6 A 184 LEU VAL LYS PRO GLU TYR ILE VAL LYS THR THR LEU PRO SEQRES 7 A 184 ALA GLN GLN ASP LEU LEU ASP ILE LYS ALA ILE GLU ASN SEQRES 8 A 184 TRP ALA LYS GLU THR ASP TRP ALA GLY LEU GLU VAL VAL SEQRES 9 A 184 ALA HIS THR PRO LYS LEU SER LYS ARG HIS ALA GLN VAL SEQRES 10 A 184 GLU PHE LYS ALA TYR PHE LYS THR PRO ASP GLY LEU GLN SEQRES 11 A 184 ALA HIS HIS GLU LEU SER THR PHE VAL LYS ILE LYS ASN SEQRES 12 A 184 LYS ALA ASN SER ASP ALA SER TRP TYR PHE LEU ASP PRO SEQRES 13 A 184 THR VAL SER MSE SER VAL THR GLN LYS GLN PRO CYS ILE SEQRES 14 A 184 CYS GLY SER GLY GLU LYS PHE LYS ARG CYS CYS GLY MSE SEQRES 15 A 184 TYR ILE MODRES 2I9W MSE A 1 MET SELENOMETHIONINE MODRES 2I9W MSE A 56 MET SELENOMETHIONINE MODRES 2I9W MSE A 159 MET SELENOMETHIONINE MODRES 2I9W MSE A 181 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 56 13 HET MSE A 159 8 HET MSE A 181 8 HET ZN A 200 1 HET ZN A 201 1 HET CL A 202 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CL CL 1- FORMUL 5 HOH *127(H2 O) HELIX 1 1 MSE A 1 GLN A 6 5 6 HELIX 2 2 CYS A 8 ILE A 12 5 5 HELIX 3 3 LEU A 24 CYS A 28 5 5 HELIX 4 4 CYS A 29 GLN A 39 1 11 HELIX 5 5 THR A 51 VAL A 66 1 16 HELIX 6 6 LYS A 67 THR A 74 1 8 HELIX 7 7 LEU A 76 LEU A 83 5 8 HELIX 8 8 ASP A 84 THR A 95 1 12 HELIX 9 9 LYS A 174 TYR A 182 5 9 SHEET 1 A 4 ASP A 96 THR A 106 0 SHEET 2 A 4 HIS A 113 THR A 124 -1 O GLN A 115 N THR A 106 SHEET 3 A 4 GLY A 127 LYS A 141 -1 O GLN A 129 N PHE A 122 SHEET 4 A 4 ALA A 148 PHE A 152 -1 O TYR A 151 N VAL A 138 LINK C MSE A 1 N LEU A 2 1555 1555 1.34 LINK C LEU A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ARG A 57 1555 1555 1.34 LINK C SER A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N SER A 160 1555 1555 1.32 LINK C GLY A 180 N MSE A 181 1555 1555 1.34 LINK C MSE A 181 N TYR A 182 1555 1555 1.33 LINK SG CYS A 8 ZN ZN A 200 1555 1555 2.33 LINK SG CYS A 10 ZN ZN A 200 1555 1555 2.38 LINK SG CYS A 28 ZN ZN A 200 1555 1555 2.33 LINK SG CYS A 29 ZN ZN A 200 1555 1555 2.36 LINK SG CYS A 167 ZN ZN A 201 1555 1555 2.32 LINK SG CYS A 169 ZN ZN A 201 1555 1555 2.37 LINK SG CYS A 178 ZN ZN A 201 1555 1555 2.43 LINK SG CYS A 179 ZN ZN A 201 1555 1555 2.37 SITE 1 AC1 4 CYS A 8 CYS A 10 CYS A 28 CYS A 29 SITE 1 AC2 4 CYS A 167 CYS A 169 CYS A 178 CYS A 179 SITE 1 AC3 2 SER A 160 LYS A 174 CRYST1 41.490 54.690 83.880 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011920 0.00000 HETATM 1 N MSE A 1 22.428 4.869 21.045 1.00 31.26 N HETATM 2 CA MSE A 1 21.374 3.987 20.470 1.00 28.10 C HETATM 3 C MSE A 1 20.251 3.712 21.447 1.00 29.74 C HETATM 4 O MSE A 1 19.069 3.731 21.055 1.00 31.57 O HETATM 5 CB MSE A 1 21.968 2.673 19.972 1.00 30.80 C HETATM 6 CG MSE A 1 22.866 1.895 20.929 1.00 29.73 C HETATM 7 SE MSE A 1 23.680 0.340 19.970 0.75 21.51 SE HETATM 8 CE MSE A 1 22.174 0.087 18.735 1.00 30.50 C