data_2IA7 # _entry.id 2IA7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IA7 RCSB RCSB039331 WWPDB D_1000039331 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 367993 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2IA7 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-09-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of putative tail lysozyme (NP_952040.1) from GEOBACTER SULFURREDUCENS at 1.44 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 # _cell.entry_id 2IA7 _cell.length_a 40.270 _cell.length_b 43.332 _cell.length_c 64.636 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2IA7 _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tail lysozyme, putative' 15032.729 1 ? ? ? ? 2 non-polymer syn 'NITRATE ION' 62.005 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 120 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)TKAREFLGTGWKFPVAAGADGA(MSE)VLSSAEEDIAESIRIILGTARGERV(MSE)RPDFGCGIHDRVFSVIN TTTLGLIENEVKEALILWEPRIELLSVTASPREAAEGRLLIDIEYRVRSTNTRFNLVYPFYLKESA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTKAREFLGTGWKFPVAAGADGAMVLSSAEEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEVK EALILWEPRIELLSVTASPREAAEGRLLIDIEYRVRSTNTRFNLVYPFYLKESA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 367993 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 LYS n 1 5 ALA n 1 6 ARG n 1 7 GLU n 1 8 PHE n 1 9 LEU n 1 10 GLY n 1 11 THR n 1 12 GLY n 1 13 TRP n 1 14 LYS n 1 15 PHE n 1 16 PRO n 1 17 VAL n 1 18 ALA n 1 19 ALA n 1 20 GLY n 1 21 ALA n 1 22 ASP n 1 23 GLY n 1 24 ALA n 1 25 MSE n 1 26 VAL n 1 27 LEU n 1 28 SER n 1 29 SER n 1 30 ALA n 1 31 GLU n 1 32 GLU n 1 33 ASP n 1 34 ILE n 1 35 ALA n 1 36 GLU n 1 37 SER n 1 38 ILE n 1 39 ARG n 1 40 ILE n 1 41 ILE n 1 42 LEU n 1 43 GLY n 1 44 THR n 1 45 ALA n 1 46 ARG n 1 47 GLY n 1 48 GLU n 1 49 ARG n 1 50 VAL n 1 51 MSE n 1 52 ARG n 1 53 PRO n 1 54 ASP n 1 55 PHE n 1 56 GLY n 1 57 CYS n 1 58 GLY n 1 59 ILE n 1 60 HIS n 1 61 ASP n 1 62 ARG n 1 63 VAL n 1 64 PHE n 1 65 SER n 1 66 VAL n 1 67 ILE n 1 68 ASN n 1 69 THR n 1 70 THR n 1 71 THR n 1 72 LEU n 1 73 GLY n 1 74 LEU n 1 75 ILE n 1 76 GLU n 1 77 ASN n 1 78 GLU n 1 79 VAL n 1 80 LYS n 1 81 GLU n 1 82 ALA n 1 83 LEU n 1 84 ILE n 1 85 LEU n 1 86 TRP n 1 87 GLU n 1 88 PRO n 1 89 ARG n 1 90 ILE n 1 91 GLU n 1 92 LEU n 1 93 LEU n 1 94 SER n 1 95 VAL n 1 96 THR n 1 97 ALA n 1 98 SER n 1 99 PRO n 1 100 ARG n 1 101 GLU n 1 102 ALA n 1 103 ALA n 1 104 GLU n 1 105 GLY n 1 106 ARG n 1 107 LEU n 1 108 LEU n 1 109 ILE n 1 110 ASP n 1 111 ILE n 1 112 GLU n 1 113 TYR n 1 114 ARG n 1 115 VAL n 1 116 ARG n 1 117 SER n 1 118 THR n 1 119 ASN n 1 120 THR n 1 121 ARG n 1 122 PHE n 1 123 ASN n 1 124 LEU n 1 125 VAL n 1 126 TYR n 1 127 PRO n 1 128 PHE n 1 129 TYR n 1 130 LEU n 1 131 LYS n 1 132 GLU n 1 133 SER n 1 134 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Geobacter _entity_src_gen.pdbx_gene_src_gene NP_952040.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter sulfurreducens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 35554 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q74EH6_GEOSL _struct_ref.pdbx_db_accession Q74EH6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTKAREFLGTGWKFPVAAGADGAMVLSSAEEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEVKE ALILWEPRIELLSVTASPREAAEGRLLIDIEYRVRSTNTRFNLVYPFYLKESA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2IA7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 134 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q74EH6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 133 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 133 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IA7 GLY A 1 ? UNP Q74EH6 ? ? 'CLONING ARTIFACT' 0 1 1 2IA7 MSE A 2 ? UNP Q74EH6 MET 1 'MODIFIED RESIDUE' 1 2 1 2IA7 MSE A 25 ? UNP Q74EH6 MET 24 'MODIFIED RESIDUE' 24 3 1 2IA7 MSE A 51 ? UNP Q74EH6 MET 50 'MODIFIED RESIDUE' 50 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2IA7 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 37.10 _exptl_crystal.density_Matthews 1.97 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP, NANODROP' _exptl_crystal_grow.pH 7.1 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2M LiNO3, 20.0% PEG 3350, pH 7.1, VAPOR DIFFUSION,SITTING DROP, NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2006-08-11 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double Crystal Monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.94926 1.0 2 0.97925 1.0 3 0.97939 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_wavelength_list 0.94926,0.97925,0.97939 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 2IA7 _reflns.d_resolution_high 1.440 _reflns.d_resolution_low 43.315 _reflns.number_obs 19105 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_sigmaI 13.380 _reflns.percent_possible_obs 90.4 _reflns.B_iso_Wilson_estimate 23.067 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.92 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.44 1.49 1882 ? ? 0.439 1.8 ? ? 1.92 ? 982 48.90 1 1 1.49 1.55 3145 ? ? 0.375 2.3 ? ? 2.12 ? 1482 70.60 2 1 1.55 1.62 4370 ? ? 0.307 3.0 ? ? 2.42 ? 1804 87.70 3 1 1.62 1.71 6843 ? ? 0.245 4.6 ? ? 3.25 ? 2106 97.00 4 1 1.71 1.81 6954 ? ? 0.18 6.7 ? ? 3.54 ? 1963 99.80 5 1 1.81 1.95 7579 ? ? 0.105 10.6 ? ? 3.57 ? 2124 100.0 6 1 1.95 2.15 7646 ? ? 0.066 15.5 ? ? 3.58 ? 2135 99.70 7 1 2.15 2.46 7552 ? ? 0.048 20.2 ? ? 3.55 ? 2127 100.0 8 1 2.46 3.10 7580 ? ? 0.043 24.6 ? ? 3.51 ? 2158 99.50 9 1 3.10 43.3 7444 ? ? 0.035 28.7 ? ? 2.35 ? 2223 97.80 10 1 # _refine.entry_id 2IA7 _refine.ls_d_res_high 1.440 _refine.ls_d_res_low 43.315 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 90.950 _refine.ls_number_reflns_obs 19064 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.7 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL FACTORS ONLY. 4. THE N-TERMINAL 0-22 IS DISODERED. ; _refine.ls_R_factor_obs 0.169 _refine.ls_R_factor_R_work 0.168 _refine.ls_R_factor_R_free 0.203 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 978 _refine.B_iso_mean 17.112 _refine.aniso_B[1][1] 1.520 _refine.aniso_B[2][2] -0.800 _refine.aniso_B[3][3] -0.720 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.pdbx_overall_ESU_R 0.069 _refine.pdbx_overall_ESU_R_Free 0.073 _refine.overall_SU_ML 0.051 _refine.overall_SU_B 2.740 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 870 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 998 _refine_hist.d_res_high 1.440 _refine_hist.d_res_low 43.315 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 919 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 629 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1254 1.544 1.985 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1535 0.956 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 122 5.578 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39 35.218 22.564 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 163 11.943 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 15.474 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 152 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1022 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 191 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 151 0.202 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 685 0.207 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 445 0.177 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 535 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 88 0.144 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 12 0.124 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 39 0.323 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 19 0.172 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 615 2.246 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 229 0.439 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 936 2.820 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 367 4.144 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 312 5.613 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.44 _refine_ls_shell.d_res_low 1.480 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 50.730 _refine_ls_shell.number_reflns_R_work 725 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.291 _refine_ls_shell.R_factor_R_free 0.327 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 767 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2IA7 _struct.title 'Crystal structure of putative tail lysozyme (NP_952040.1) from GEOBACTER SULFURREDUCENS at 1.44 A resolution' _struct.pdbx_descriptor 'Crystal structure of putative tail lysozyme (NP_952040.1) from GEOBACTER SULFURREDUCENS at 1.44 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;NP_952040.1, putative tail lysozyme, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, Unknown function ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 2IA7 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 29 ? GLY A 43 ? SER A 28 GLY A 42 1 ? 15 HELX_P HELX_P2 2 CYS A 57 ? ARG A 62 ? CYS A 56 ARG A 61 5 ? 6 HELX_P HELX_P3 3 ASN A 68 ? GLU A 87 ? ASN A 67 GLU A 86 1 ? 20 HELX_P HELX_P4 4 GLU A 101 ? GLU A 104 ? GLU A 100 GLU A 103 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 24 C ? ? ? 1_555 A MSE 25 N ? ? A ALA 23 A MSE 24 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale ? ? A MSE 25 C ? ? ? 1_555 A VAL 26 N ? ? A MSE 24 A VAL 25 1_555 ? ? ? ? ? ? ? 1.313 ? covale3 covale ? ? A VAL 50 C ? ? ? 1_555 A MSE 51 N ? ? A VAL 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 51 C ? ? ? 1_555 A ARG 52 N ? ? A MSE 50 A ARG 51 1_555 ? ? ? ? ? ? ? 1.337 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 90 ? SER A 98 ? ILE A 89 SER A 97 A 2 ARG A 106 ? VAL A 115 ? ARG A 105 VAL A 114 A 3 ARG A 121 ? TYR A 129 ? ARG A 120 TYR A 128 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 98 ? N SER A 97 O LEU A 108 ? O LEU A 107 A 2 3 N ILE A 111 ? N ILE A 110 O LEU A 124 ? O LEU A 123 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE NO3 A 134' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 135' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 49 ? ARG A 48 . ? 1_555 ? 2 AC1 7 VAL A 50 ? VAL A 49 . ? 1_555 ? 3 AC1 7 MSE A 51 ? MSE A 50 . ? 1_555 ? 4 AC1 7 ARG A 52 ? ARG A 51 . ? 1_555 ? 5 AC1 7 VAL A 66 ? VAL A 65 . ? 2_665 ? 6 AC1 7 ILE A 67 ? ILE A 66 . ? 2_665 ? 7 AC1 7 HOH D . ? HOH A 240 . ? 1_555 ? 8 AC2 4 LEU A 93 ? LEU A 92 . ? 4_456 ? 9 AC2 4 SER A 94 ? SER A 93 . ? 4_456 ? 10 AC2 4 HOH D . ? HOH A 159 . ? 1_555 ? 11 AC2 4 HOH D . ? HOH A 219 . ? 1_555 ? # _atom_sites.entry_id 2IA7 _atom_sites.fract_transf_matrix[1][1] 0.02483 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02308 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01547 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 THR 3 2 ? ? ? A . n A 1 4 LYS 4 3 ? ? ? A . n A 1 5 ALA 5 4 ? ? ? A . n A 1 6 ARG 6 5 ? ? ? A . n A 1 7 GLU 7 6 ? ? ? A . n A 1 8 PHE 8 7 ? ? ? A . n A 1 9 LEU 9 8 ? ? ? A . n A 1 10 GLY 10 9 ? ? ? A . n A 1 11 THR 11 10 ? ? ? A . n A 1 12 GLY 12 11 ? ? ? A . n A 1 13 TRP 13 12 ? ? ? A . n A 1 14 LYS 14 13 ? ? ? A . n A 1 15 PHE 15 14 ? ? ? A . n A 1 16 PRO 16 15 ? ? ? A . n A 1 17 VAL 17 16 ? ? ? A . n A 1 18 ALA 18 17 ? ? ? A . n A 1 19 ALA 19 18 ? ? ? A . n A 1 20 GLY 20 19 ? ? ? A . n A 1 21 ALA 21 20 ? ? ? A . n A 1 22 ASP 22 21 ? ? ? A . n A 1 23 GLY 23 22 ? ? ? A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 MSE 25 24 24 MSE MSE A . n A 1 26 VAL 26 25 25 VAL VAL A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 SER 28 27 27 SER SER A . n A 1 29 SER 29 28 28 SER SER A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 SER 37 36 36 SER SER A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 ARG 39 38 38 ARG ARG A . n A 1 40 ILE 40 39 39 ILE ILE A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 THR 44 43 43 THR THR A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ARG 46 45 45 ARG ARG A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 MSE 51 50 50 MSE MSE A . n A 1 52 ARG 52 51 51 ARG ARG A . n A 1 53 PRO 53 52 52 PRO PRO A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 PHE 55 54 54 PHE PHE A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 CYS 57 56 56 CYS CYS A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 HIS 60 59 59 HIS HIS A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 ARG 62 61 61 ARG ARG A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 PHE 64 63 63 PHE PHE A . n A 1 65 SER 65 64 64 SER SER A . n A 1 66 VAL 66 65 65 VAL VAL A . n A 1 67 ILE 67 66 66 ILE ILE A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 THR 69 68 68 THR THR A . n A 1 70 THR 70 69 69 THR THR A . n A 1 71 THR 71 70 70 THR THR A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 ILE 75 74 74 ILE ILE A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 ASN 77 76 76 ASN ASN A . n A 1 78 GLU 78 77 77 GLU GLU A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 LYS 80 79 79 LYS LYS A . n A 1 81 GLU 81 80 80 GLU GLU A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 TRP 86 85 85 TRP TRP A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 GLU 91 90 90 GLU GLU A . n A 1 92 LEU 92 91 91 LEU LEU A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 SER 94 93 93 SER SER A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 THR 96 95 95 THR THR A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 PRO 99 98 98 PRO PRO A . n A 1 100 ARG 100 99 99 ARG ARG A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 ALA 103 102 102 ALA ALA A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 GLY 105 104 104 GLY GLY A . n A 1 106 ARG 106 105 105 ARG ARG A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 GLU 112 111 111 GLU GLU A . n A 1 113 TYR 113 112 112 TYR TYR A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 ARG 116 115 115 ARG ARG A . n A 1 117 SER 117 116 116 SER SER A . n A 1 118 THR 118 117 117 THR THR A . n A 1 119 ASN 119 118 118 ASN ASN A . n A 1 120 THR 120 119 119 THR THR A . n A 1 121 ARG 121 120 120 ARG ARG A . n A 1 122 PHE 122 121 121 PHE PHE A . n A 1 123 ASN 123 122 122 ASN ASN A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 VAL 125 124 124 VAL VAL A . n A 1 126 TYR 126 125 125 TYR TYR A . n A 1 127 PRO 127 126 126 PRO PRO A . n A 1 128 PHE 128 127 127 PHE PHE A . n A 1 129 TYR 129 128 128 TYR TYR A . n A 1 130 LEU 130 129 129 LEU LEU A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 SER 133 132 132 SER SER A . n A 1 134 ALA 134 133 133 ALA ALA A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 1 134 2 NO3 NO3 A . C 3 EDO 1 135 1 EDO EDO A . D 4 HOH 1 136 3 HOH HOH A . D 4 HOH 2 137 4 HOH HOH A . D 4 HOH 3 138 5 HOH HOH A . D 4 HOH 4 139 6 HOH HOH A . D 4 HOH 5 140 7 HOH HOH A . D 4 HOH 6 141 8 HOH HOH A . D 4 HOH 7 142 9 HOH HOH A . D 4 HOH 8 143 10 HOH HOH A . D 4 HOH 9 144 11 HOH HOH A . D 4 HOH 10 145 12 HOH HOH A . D 4 HOH 11 146 13 HOH HOH A . D 4 HOH 12 147 14 HOH HOH A . D 4 HOH 13 148 15 HOH HOH A . D 4 HOH 14 149 16 HOH HOH A . D 4 HOH 15 150 17 HOH HOH A . D 4 HOH 16 151 18 HOH HOH A . D 4 HOH 17 152 19 HOH HOH A . D 4 HOH 18 153 20 HOH HOH A . D 4 HOH 19 154 21 HOH HOH A . D 4 HOH 20 155 22 HOH HOH A . D 4 HOH 21 156 23 HOH HOH A . D 4 HOH 22 157 24 HOH HOH A . D 4 HOH 23 158 25 HOH HOH A . D 4 HOH 24 159 26 HOH HOH A . D 4 HOH 25 160 27 HOH HOH A . D 4 HOH 26 161 28 HOH HOH A . D 4 HOH 27 162 29 HOH HOH A . D 4 HOH 28 163 30 HOH HOH A . D 4 HOH 29 164 31 HOH HOH A . D 4 HOH 30 165 32 HOH HOH A . D 4 HOH 31 166 33 HOH HOH A . D 4 HOH 32 167 34 HOH HOH A . D 4 HOH 33 168 35 HOH HOH A . D 4 HOH 34 169 36 HOH HOH A . D 4 HOH 35 170 37 HOH HOH A . D 4 HOH 36 171 38 HOH HOH A . D 4 HOH 37 172 39 HOH HOH A . D 4 HOH 38 173 40 HOH HOH A . D 4 HOH 39 174 41 HOH HOH A . D 4 HOH 40 175 42 HOH HOH A . D 4 HOH 41 176 43 HOH HOH A . D 4 HOH 42 177 44 HOH HOH A . D 4 HOH 43 178 45 HOH HOH A . D 4 HOH 44 179 46 HOH HOH A . D 4 HOH 45 180 47 HOH HOH A . D 4 HOH 46 181 48 HOH HOH A . D 4 HOH 47 182 49 HOH HOH A . D 4 HOH 48 183 50 HOH HOH A . D 4 HOH 49 184 51 HOH HOH A . D 4 HOH 50 185 52 HOH HOH A . D 4 HOH 51 186 53 HOH HOH A . D 4 HOH 52 187 54 HOH HOH A . D 4 HOH 53 188 55 HOH HOH A . D 4 HOH 54 189 56 HOH HOH A . D 4 HOH 55 190 57 HOH HOH A . D 4 HOH 56 191 58 HOH HOH A . D 4 HOH 57 192 59 HOH HOH A . D 4 HOH 58 193 60 HOH HOH A . D 4 HOH 59 194 61 HOH HOH A . D 4 HOH 60 195 62 HOH HOH A . D 4 HOH 61 196 63 HOH HOH A . D 4 HOH 62 197 64 HOH HOH A . D 4 HOH 63 198 65 HOH HOH A . D 4 HOH 64 199 66 HOH HOH A . D 4 HOH 65 200 67 HOH HOH A . D 4 HOH 66 201 68 HOH HOH A . D 4 HOH 67 202 69 HOH HOH A . D 4 HOH 68 203 70 HOH HOH A . D 4 HOH 69 204 71 HOH HOH A . D 4 HOH 70 205 72 HOH HOH A . D 4 HOH 71 206 73 HOH HOH A . D 4 HOH 72 207 74 HOH HOH A . D 4 HOH 73 208 75 HOH HOH A . D 4 HOH 74 209 76 HOH HOH A . D 4 HOH 75 210 77 HOH HOH A . D 4 HOH 76 211 78 HOH HOH A . D 4 HOH 77 212 79 HOH HOH A . D 4 HOH 78 213 80 HOH HOH A . D 4 HOH 79 214 81 HOH HOH A . D 4 HOH 80 215 82 HOH HOH A . D 4 HOH 81 216 83 HOH HOH A . D 4 HOH 82 217 84 HOH HOH A . D 4 HOH 83 218 85 HOH HOH A . D 4 HOH 84 219 86 HOH HOH A . D 4 HOH 85 220 87 HOH HOH A . D 4 HOH 86 221 88 HOH HOH A . D 4 HOH 87 222 89 HOH HOH A . D 4 HOH 88 223 90 HOH HOH A . D 4 HOH 89 224 91 HOH HOH A . D 4 HOH 90 225 92 HOH HOH A . D 4 HOH 91 226 93 HOH HOH A . D 4 HOH 92 227 94 HOH HOH A . D 4 HOH 93 228 95 HOH HOH A . D 4 HOH 94 229 96 HOH HOH A . D 4 HOH 95 230 97 HOH HOH A . D 4 HOH 96 231 98 HOH HOH A . D 4 HOH 97 232 99 HOH HOH A . D 4 HOH 98 233 100 HOH HOH A . D 4 HOH 99 234 101 HOH HOH A . D 4 HOH 100 235 102 HOH HOH A . D 4 HOH 101 236 103 HOH HOH A . D 4 HOH 102 237 104 HOH HOH A . D 4 HOH 103 238 105 HOH HOH A . D 4 HOH 104 239 106 HOH HOH A . D 4 HOH 105 240 107 HOH HOH A . D 4 HOH 106 241 108 HOH HOH A . D 4 HOH 107 242 109 HOH HOH A . D 4 HOH 108 243 110 HOH HOH A . D 4 HOH 109 244 111 HOH HOH A . D 4 HOH 110 245 112 HOH HOH A . D 4 HOH 111 246 113 HOH HOH A . D 4 HOH 112 247 114 HOH HOH A . D 4 HOH 113 248 115 HOH HOH A . D 4 HOH 114 249 116 HOH HOH A . D 4 HOH 115 250 117 HOH HOH A . D 4 HOH 116 251 118 HOH HOH A . D 4 HOH 117 252 119 HOH HOH A . D 4 HOH 118 253 120 HOH HOH A . D 4 HOH 119 254 121 HOH HOH A . D 4 HOH 120 255 122 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 25 A MSE 24 ? MET SELENOMETHIONINE 2 A MSE 51 A MSE 50 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-19 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_struct_assembly_auth_evidence # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 25.9332 _pdbx_refine_tls.origin_y 11.9793 _pdbx_refine_tls.origin_z 41.2949 _pdbx_refine_tls.T[1][1] -0.0343 _pdbx_refine_tls.T[2][2] -0.0055 _pdbx_refine_tls.T[3][3] -0.0089 _pdbx_refine_tls.T[1][2] -0.0042 _pdbx_refine_tls.T[1][3] 0.0061 _pdbx_refine_tls.T[2][3] -0.0040 _pdbx_refine_tls.L[1][1] 0.6448 _pdbx_refine_tls.L[2][2] 0.9084 _pdbx_refine_tls.L[3][3] 1.1968 _pdbx_refine_tls.L[1][2] 0.1700 _pdbx_refine_tls.L[1][3] -0.0818 _pdbx_refine_tls.L[2][3] -0.4153 _pdbx_refine_tls.S[1][1] -0.0170 _pdbx_refine_tls.S[2][2] -0.0011 _pdbx_refine_tls.S[3][3] 0.0181 _pdbx_refine_tls.S[1][2] 0.0106 _pdbx_refine_tls.S[1][3] 0.0480 _pdbx_refine_tls.S[2][3] -0.0156 _pdbx_refine_tls.S[2][1] 0.0287 _pdbx_refine_tls.S[3][1] -0.0778 _pdbx_refine_tls.S[3][2] 0.0419 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 24 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 134 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 23 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 133 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 SOLVE . ? ? ? ? phasing ? ? ? 8 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEEREMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; 999 ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 51 ? CD ? A ARG 52 CD 2 1 Y 1 A ARG 51 ? NE ? A ARG 52 NE 3 1 Y 1 A ARG 51 ? CZ ? A ARG 52 CZ 4 1 Y 1 A ARG 51 ? NH1 ? A ARG 52 NH1 5 1 Y 1 A ARG 51 ? NH2 ? A ARG 52 NH2 6 1 Y 1 A GLU 103 ? OE1 ? A GLU 104 OE1 7 1 Y 1 A GLU 103 ? OE2 ? A GLU 104 OE2 8 1 Y 1 A GLU 131 ? CD ? A GLU 132 CD 9 1 Y 1 A GLU 131 ? OE1 ? A GLU 132 OE1 10 1 Y 1 A GLU 131 ? OE2 ? A GLU 132 OE2 11 1 Y 1 A SER 132 ? OG ? A SER 133 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A THR 2 ? A THR 3 4 1 Y 1 A LYS 3 ? A LYS 4 5 1 Y 1 A ALA 4 ? A ALA 5 6 1 Y 1 A ARG 5 ? A ARG 6 7 1 Y 1 A GLU 6 ? A GLU 7 8 1 Y 1 A PHE 7 ? A PHE 8 9 1 Y 1 A LEU 8 ? A LEU 9 10 1 Y 1 A GLY 9 ? A GLY 10 11 1 Y 1 A THR 10 ? A THR 11 12 1 Y 1 A GLY 11 ? A GLY 12 13 1 Y 1 A TRP 12 ? A TRP 13 14 1 Y 1 A LYS 13 ? A LYS 14 15 1 Y 1 A PHE 14 ? A PHE 15 16 1 Y 1 A PRO 15 ? A PRO 16 17 1 Y 1 A VAL 16 ? A VAL 17 18 1 Y 1 A ALA 17 ? A ALA 18 19 1 Y 1 A ALA 18 ? A ALA 19 20 1 Y 1 A GLY 19 ? A GLY 20 21 1 Y 1 A ALA 20 ? A ALA 21 22 1 Y 1 A ASP 21 ? A ASP 22 23 1 Y 1 A GLY 22 ? A GLY 23 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NITRATE ION' NO3 3 1,2-ETHANEDIOL EDO 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #