data_2IBK # _entry.id 2IBK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2IBK pdb_00002ibk 10.2210/pdb2ibk/pdb NDB PD0870 ? ? RCSB RCSB039379 ? ? WWPDB D_1000039379 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2IA6 _pdbx_database_related.details 'Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IBK _pdbx_database_status.recvd_initial_deposition_date 2006-09-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bauer, J.' 1 'Ling, H.' 2 'Sayer, J.M.' 3 'Xing, G.' 4 'Yagi, H.' 5 'Jerina, D.M.' 6 # _citation.id primary _citation.title 'A structural gap in Dpo4 supports mutagenic bypass of a major benzo[a]pyrene dG adduct in DNA through template misalignment.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 104 _citation.page_first 14905 _citation.page_last 14910 _citation.year 2007 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17848527 _citation.pdbx_database_id_DOI 10.1073/pnas.0700717104 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bauer, J.' 1 ? primary 'Xing, G.' 2 ? primary 'Yagi, H.' 3 ? primary 'Sayer, J.M.' 4 ? primary 'Jerina, D.M.' 5 ? primary 'Ling, H.' 6 ? # _cell.entry_id 2IBK _cell.length_a 96.714 _cell.length_b 100.473 _cell.length_c 52.332 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2IBK _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*AP*T)-3'" 4424.888 1 ? ? ? ? 2 polymer syn "5'-D(*TP*CP*AP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'" 5058.286 1 ? ? ? ? 3 polymer man 'DNA polymerase IV' 40257.879 1 2.7.7.7 ? ? ? 4 non-polymer syn '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' 304.339 1 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 7 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 8 non-polymer syn 'PYROPHOSPHATE 2-' 175.959 1 ? ? ? ? 9 water nat water 18.015 201 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DT)(DT)(DA)(DT)' GGGGGAAGGATTAT D ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DT)(DG)(DA)(DA)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)' TCATGAATCCTTCCCCC E ? 3 'polypeptide(L)' no no ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DA n 1 11 DT n 1 12 DT n 1 13 DA n 1 14 DT n 2 1 DT n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 DT n 2 9 DC n 2 10 DC n 2 11 DT n 2 12 DT n 2 13 DC n 2 14 DC n 2 15 DC n 2 16 DC n 2 17 DC n 3 1 MET n 3 2 ILE n 3 3 VAL n 3 4 LEU n 3 5 PHE n 3 6 VAL n 3 7 ASP n 3 8 PHE n 3 9 ASP n 3 10 TYR n 3 11 PHE n 3 12 TYR n 3 13 ALA n 3 14 GLN n 3 15 VAL n 3 16 GLU n 3 17 GLU n 3 18 VAL n 3 19 LEU n 3 20 ASN n 3 21 PRO n 3 22 SER n 3 23 LEU n 3 24 LYS n 3 25 GLY n 3 26 LYS n 3 27 PRO n 3 28 VAL n 3 29 VAL n 3 30 VAL n 3 31 CYS n 3 32 VAL n 3 33 PHE n 3 34 SER n 3 35 GLY n 3 36 ARG n 3 37 PHE n 3 38 GLU n 3 39 ASP n 3 40 SER n 3 41 GLY n 3 42 ALA n 3 43 VAL n 3 44 ALA n 3 45 THR n 3 46 ALA n 3 47 ASN n 3 48 TYR n 3 49 GLU n 3 50 ALA n 3 51 ARG n 3 52 LYS n 3 53 PHE n 3 54 GLY n 3 55 VAL n 3 56 LYS n 3 57 ALA n 3 58 GLY n 3 59 ILE n 3 60 PRO n 3 61 ILE n 3 62 VAL n 3 63 GLU n 3 64 ALA n 3 65 LYS n 3 66 LYS n 3 67 ILE n 3 68 LEU n 3 69 PRO n 3 70 ASN n 3 71 ALA n 3 72 VAL n 3 73 TYR n 3 74 LEU n 3 75 PRO n 3 76 MET n 3 77 ARG n 3 78 LYS n 3 79 GLU n 3 80 VAL n 3 81 TYR n 3 82 GLN n 3 83 GLN n 3 84 VAL n 3 85 SER n 3 86 SER n 3 87 ARG n 3 88 ILE n 3 89 MET n 3 90 ASN n 3 91 LEU n 3 92 LEU n 3 93 ARG n 3 94 GLU n 3 95 TYR n 3 96 SER n 3 97 GLU n 3 98 LYS n 3 99 ILE n 3 100 GLU n 3 101 ILE n 3 102 ALA n 3 103 SER n 3 104 ILE n 3 105 ASP n 3 106 GLU n 3 107 ALA n 3 108 TYR n 3 109 LEU n 3 110 ASP n 3 111 ILE n 3 112 SER n 3 113 ASP n 3 114 LYS n 3 115 VAL n 3 116 ARG n 3 117 ASP n 3 118 TYR n 3 119 ARG n 3 120 GLU n 3 121 ALA n 3 122 TYR n 3 123 ASN n 3 124 LEU n 3 125 GLY n 3 126 LEU n 3 127 GLU n 3 128 ILE n 3 129 LYS n 3 130 ASN n 3 131 LYS n 3 132 ILE n 3 133 LEU n 3 134 GLU n 3 135 LYS n 3 136 GLU n 3 137 LYS n 3 138 ILE n 3 139 THR n 3 140 VAL n 3 141 THR n 3 142 VAL n 3 143 GLY n 3 144 ILE n 3 145 SER n 3 146 LYS n 3 147 ASN n 3 148 LYS n 3 149 VAL n 3 150 PHE n 3 151 ALA n 3 152 LYS n 3 153 ILE n 3 154 ALA n 3 155 ALA n 3 156 ASP n 3 157 MET n 3 158 ALA n 3 159 LYS n 3 160 PRO n 3 161 ASN n 3 162 GLY n 3 163 ILE n 3 164 LYS n 3 165 VAL n 3 166 ILE n 3 167 ASP n 3 168 ASP n 3 169 GLU n 3 170 GLU n 3 171 VAL n 3 172 LYS n 3 173 ARG n 3 174 LEU n 3 175 ILE n 3 176 ARG n 3 177 GLU n 3 178 LEU n 3 179 ASP n 3 180 ILE n 3 181 ALA n 3 182 ASP n 3 183 VAL n 3 184 PRO n 3 185 GLY n 3 186 ILE n 3 187 GLY n 3 188 ASN n 3 189 ILE n 3 190 THR n 3 191 ALA n 3 192 GLU n 3 193 LYS n 3 194 LEU n 3 195 LYS n 3 196 LYS n 3 197 LEU n 3 198 GLY n 3 199 ILE n 3 200 ASN n 3 201 LYS n 3 202 LEU n 3 203 VAL n 3 204 ASP n 3 205 THR n 3 206 LEU n 3 207 SER n 3 208 ILE n 3 209 GLU n 3 210 PHE n 3 211 ASP n 3 212 LYS n 3 213 LEU n 3 214 LYS n 3 215 GLY n 3 216 MET n 3 217 ILE n 3 218 GLY n 3 219 GLU n 3 220 ALA n 3 221 LYS n 3 222 ALA n 3 223 LYS n 3 224 TYR n 3 225 LEU n 3 226 ILE n 3 227 SER n 3 228 LEU n 3 229 ALA n 3 230 ARG n 3 231 ASP n 3 232 GLU n 3 233 TYR n 3 234 ASN n 3 235 GLU n 3 236 PRO n 3 237 ILE n 3 238 ARG n 3 239 THR n 3 240 ARG n 3 241 VAL n 3 242 ARG n 3 243 LYS n 3 244 SER n 3 245 ILE n 3 246 GLY n 3 247 ARG n 3 248 ILE n 3 249 VAL n 3 250 THR n 3 251 MET n 3 252 LYS n 3 253 ARG n 3 254 ASN n 3 255 SER n 3 256 ARG n 3 257 ASN n 3 258 LEU n 3 259 GLU n 3 260 GLU n 3 261 ILE n 3 262 LYS n 3 263 PRO n 3 264 TYR n 3 265 LEU n 3 266 PHE n 3 267 ARG n 3 268 ALA n 3 269 ILE n 3 270 GLU n 3 271 GLU n 3 272 SER n 3 273 TYR n 3 274 TYR n 3 275 LYS n 3 276 LEU n 3 277 ASP n 3 278 LYS n 3 279 ARG n 3 280 ILE n 3 281 PRO n 3 282 LYS n 3 283 ALA n 3 284 ILE n 3 285 HIS n 3 286 VAL n 3 287 VAL n 3 288 ALA n 3 289 VAL n 3 290 THR n 3 291 GLU n 3 292 ASP n 3 293 LEU n 3 294 ASP n 3 295 ILE n 3 296 VAL n 3 297 SER n 3 298 ARG n 3 299 GLY n 3 300 ARG n 3 301 THR n 3 302 PHE n 3 303 PRO n 3 304 HIS n 3 305 GLY n 3 306 ILE n 3 307 SER n 3 308 LYS n 3 309 GLU n 3 310 THR n 3 311 ALA n 3 312 TYR n 3 313 SER n 3 314 GLU n 3 315 SER n 3 316 VAL n 3 317 LYS n 3 318 LEU n 3 319 LEU n 3 320 GLN n 3 321 LYS n 3 322 ILE n 3 323 LEU n 3 324 GLU n 3 325 GLU n 3 326 ASP n 3 327 GLU n 3 328 ARG n 3 329 LYS n 3 330 ILE n 3 331 ARG n 3 332 ARG n 3 333 ILE n 3 334 GLY n 3 335 VAL n 3 336 ARG n 3 337 PHE n 3 338 SER n 3 339 LYS n 3 340 PHE n 3 341 ILE n 3 342 GLU n 3 343 ALA n 3 344 ILE n 3 345 GLY n 3 346 LEU n 3 347 ASP n 3 348 LYS n 3 349 PHE n 3 350 PHE n 3 351 ASP n 3 352 THR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4' _entity_src_gen.gene_src_species 'Sulfolobus solfataricus' _entity_src_gen.gene_src_strain P2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273057 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO42_SULSO Q97W02 3 ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; 1 ? 2 PDB 2IBK 2IBK 1 ? ? ? 3 PDB 2IBK 2IBK 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IBK A 1 ? 352 ? Q97W02 1 ? 352 ? 1 352 2 2 2IBK D 1 ? 14 ? 2IBK 1 ? 14 ? 1 14 3 3 2IBK E 1 ? 17 ? 2IBK 102 ? 118 ? 102 118 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BAP non-polymer . '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' ? 'C20 H16 O3' 304.339 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 POP non-polymer . 'PYROPHOSPHATE 2-' ? 'H2 O7 P2 -2' 175.959 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2IBK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '100 mM HEPES, 100 mM calcium acetate, 12% PEG3350, 2% glycerol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 HEPES ? ? ? 1 2 1 'calcium acetate' ? ? ? 1 3 1 PEG3350 ? ? ? 1 4 1 glycerol ? ? ? 1 5 1 HOH ? ? ? 1 6 2 HEPES ? ? ? 1 7 2 'calcium acetate' ? ? ? 1 8 2 PEG3350 ? ? ? 1 9 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2005-07-15 _diffrn_detector.details 'Mirror and Monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91240 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91240 # _reflns.entry_id 2IBK _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.25 _reflns.d_resolution_low 48.3 _reflns.number_all 24724 _reflns.number_obs 24724 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.2 _reflns.B_iso_Wilson_estimate 60.8 _reflns.pdbx_redundancy 4.5 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 96.2 _reflns_shell.Rmerge_I_obs 0.56 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2348 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2IBK _refine.ls_d_res_high 2.25 _refine.ls_d_res_low 17.2 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24670 _refine.ls_number_reflns_R_free 728 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.25 _refine.ls_R_factor_R_free 0.272 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB Entry 1JX4' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean 60.2 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2IBK _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs 0.44 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.48 _refine_analyze.Luzzati_sigma_a_free 0.63 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2743 _refine_hist.pdbx_number_atoms_nucleic_acid 628 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 201 _refine_hist.number_atoms_total 3624 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 17.2 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.25 _refine_ls_shell.d_res_low 2.33 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.365 _refine_ls_shell.percent_reflns_obs 96.2 _refine_ls_shell.R_factor_R_free 0.485 _refine_ls_shell.R_factor_R_free_error 0.05 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2348 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2IBK _struct.title 'Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IBK _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'BENZO PYRENE, CARCINOGEN, LESION BYPASS, POLYMERASE, translesion synthesis, dpo4, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 5 ? J N N 5 ? K N N 8 ? L N N 9 ? M N N 9 ? N N N 9 ? # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR C 10 ? ASN C 20 ? TYR A 10 ASN A 20 1 ? 11 HELX_P HELX_P2 2 PRO C 21 ? LYS C 24 ? PRO A 21 LYS A 24 5 ? 4 HELX_P HELX_P3 3 ASN C 47 ? LYS C 52 ? ASN A 47 LYS A 52 1 ? 6 HELX_P HELX_P4 4 PRO C 60 ? LEU C 68 ? PRO A 60 LEU A 68 1 ? 9 HELX_P HELX_P5 5 ARG C 77 ? GLU C 94 ? ARG A 77 GLU A 94 1 ? 18 HELX_P HELX_P6 6 ASP C 117 ? LYS C 137 ? ASP A 117 LYS A 137 1 ? 21 HELX_P HELX_P7 7 ASN C 147 ? LYS C 159 ? ASN A 147 LYS A 159 1 ? 13 HELX_P HELX_P8 8 ASP C 167 ? LEU C 178 ? ASP A 167 LEU A 178 1 ? 12 HELX_P HELX_P9 9 ASP C 179 ? VAL C 183 ? ASP A 179 VAL A 183 5 ? 5 HELX_P HELX_P10 10 GLY C 187 ? GLY C 198 ? GLY A 187 GLY A 198 1 ? 12 HELX_P HELX_P11 11 VAL C 203 ? ILE C 208 ? VAL A 203 ILE A 208 1 ? 6 HELX_P HELX_P12 12 GLU C 209 ? GLY C 218 ? GLU A 209 GLY A 218 1 ? 10 HELX_P HELX_P13 13 GLY C 218 ? ARG C 230 ? GLY A 218 ARG A 230 1 ? 13 HELX_P HELX_P14 14 ASN C 257 ? ASP C 277 ? ASN A 257 ASP A 277 1 ? 21 HELX_P HELX_P15 15 SER C 307 ? ASP C 326 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? B DG 5 N2 ? ? ? 1_555 D BAP . "C4'" ? ? E DG 106 E BAP 1106 1_555 ? ? ? ? ? ? ? 1.452 ? ? metalc1 metalc ? ? A DT 14 OP1 ? ? ? 1_555 H CA . CA ? ? D DT 14 A CA 402 1_555 ? ? ? ? ? ? ? 2.461 ? ? metalc2 metalc ? ? C ASP 7 OD1 ? ? ? 1_555 G CA . CA ? ? A ASP 7 A CA 401 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc3 metalc ? ? C PHE 8 O ? ? ? 1_555 G CA . CA ? ? A PHE 8 A CA 401 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc4 metalc ? ? C ASP 105 OD2 ? ? ? 1_555 G CA . CA ? ? A ASP 105 A CA 401 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc5 metalc ? ? C ASP 105 OD1 ? ? ? 1_555 H CA . CA ? ? A ASP 105 A CA 402 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc6 metalc ? ? C GLU 106 OE2 ? ? ? 1_555 H CA . CA ? ? A GLU 106 A CA 402 1_555 ? ? ? ? ? ? ? 2.278 ? ? metalc7 metalc ? ? G CA . CA ? ? ? 1_555 K POP . O2 ? ? A CA 401 A POP 405 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc8 metalc ? ? G CA . CA ? ? ? 1_555 K POP . O5 ? ? A CA 401 A POP 405 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc9 metalc ? ? G CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 401 A HOH 492 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc10 metalc ? ? H CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 402 A HOH 465 1_555 ? ? ? ? ? ? ? 2.734 ? ? metalc11 metalc ? ? H CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 402 A HOH 492 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc12 metalc ? ? H CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 402 A HOH 500 1_555 ? ? ? ? ? ? ? 2.290 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 17 N3 ? ? D DG 1 E DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 17 O2 ? ? D DG 1 E DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 17 N4 ? ? D DG 1 E DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 16 N3 ? ? D DG 2 E DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 16 O2 ? ? D DG 2 E DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 16 N4 ? ? D DG 2 E DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 15 N3 ? ? D DG 3 E DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 15 O2 ? ? D DG 3 E DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 15 N4 ? ? D DG 3 E DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 14 N3 ? ? D DG 4 E DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 14 O2 ? ? D DG 4 E DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 14 N4 ? ? D DG 4 E DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 13 N3 ? ? D DG 5 E DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 13 O2 ? ? D DG 5 E DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 13 N4 ? ? D DG 5 E DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 12 N3 ? ? D DA 6 E DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 12 O4 ? ? D DA 6 E DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 11 N3 ? ? D DA 7 E DT 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 11 O4 ? ? D DA 7 E DT 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 10 N3 ? ? D DG 8 E DC 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 10 O2 ? ? D DG 8 E DC 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 10 N4 ? ? D DG 8 E DC 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 9 N3 ? ? D DG 9 E DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 9 O2 ? ? D DG 9 E DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 9 N4 ? ? D DG 9 E DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 8 N3 ? ? D DA 10 E DT 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 8 O4 ? ? D DA 10 E DT 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 7 N1 ? ? D DT 11 E DA 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 7 N6 ? ? D DT 11 E DA 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 6 N1 ? ? D DT 12 E DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 6 N6 ? ? D DT 12 E DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 4 O4 ? ? D DA 13 E DT 105 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? A DA 13 N7 ? ? ? 1_555 B DT 4 N3 ? ? D DA 13 E DT 105 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog34 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 3 N7 ? ? D DT 14 E DA 104 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog35 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 3 N6 ? ? D DT 14 E DA 104 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 159 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 160 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.30 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE C 99 ? SER C 103 ? ILE A 99 SER A 103 A 2 GLU C 106 ? ASP C 110 ? GLU A 106 ASP A 110 A 3 VAL C 3 ? PHE C 8 ? VAL A 3 PHE A 8 A 4 VAL C 140 ? SER C 145 ? VAL A 140 SER A 145 A 5 ILE C 163 ? VAL C 165 ? ILE A 163 VAL A 165 B 1 GLY C 41 ? ALA C 46 ? GLY A 41 ALA A 46 B 2 VAL C 28 ? PHE C 33 ? VAL A 28 PHE A 33 B 3 VAL C 72 ? PRO C 75 ? VAL A 72 PRO A 75 C 1 SER C 244 ? SER C 255 ? SER A 244 SER A 255 C 2 ILE C 330 ? PHE C 340 ? ILE A 330 PHE A 340 C 3 PRO C 281 ? THR C 290 ? PRO A 281 THR A 290 C 4 ILE C 295 ? THR C 301 ? ILE A 295 THR A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU C 100 ? N GLU A 100 O TYR C 108 ? O TYR A 108 A 2 3 O LEU C 109 ? O LEU A 109 N LEU C 4 ? N LEU A 4 A 3 4 N PHE C 5 ? N PHE A 5 O GLY C 143 ? O GLY A 143 A 4 5 N ILE C 144 ? N ILE A 144 O LYS C 164 ? O LYS A 164 B 1 2 O ALA C 42 ? O ALA A 42 N VAL C 32 ? N VAL A 32 B 2 3 N VAL C 29 ? N VAL A 29 O VAL C 72 ? O VAL A 72 C 1 2 N ILE C 245 ? N ILE A 245 O PHE C 337 ? O PHE A 337 C 2 3 O GLY C 334 ? O GLY A 334 N VAL C 287 ? N VAL A 287 C 3 4 N VAL C 286 ? N VAL A 286 O ARG C 298 ? O ARG A 298 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 401 ? 5 'BINDING SITE FOR RESIDUE CA A 401' AC2 Software A CA 402 ? 7 'BINDING SITE FOR RESIDUE CA A 402' AC3 Software E BAP 1106 ? 10 'BINDING SITE FOR RESIDUE BAP E 1106' AC4 Software E EDO 406 ? 2 'BINDING SITE FOR RESIDUE EDO E 406' AC5 Software A EDO 407 ? 4 'BINDING SITE FOR RESIDUE EDO A 407' AC6 Software A EDO 408 ? 3 'BINDING SITE FOR RESIDUE EDO A 408' AC7 Software A POP 405 ? 16 'BINDING SITE FOR RESIDUE POP A 405' AC8 Software E GOL 409 ? 4 'BINDING SITE FOR RESIDUE GOL E 409' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP C 7 ? ASP A 7 . ? 1_555 ? 2 AC1 5 PHE C 8 ? PHE A 8 . ? 1_555 ? 3 AC1 5 ASP C 105 ? ASP A 105 . ? 1_555 ? 4 AC1 5 POP K . ? POP A 405 . ? 1_555 ? 5 AC1 5 HOH N . ? HOH A 492 . ? 1_555 ? 6 AC2 7 ASP C 105 ? ASP A 105 . ? 1_555 ? 7 AC2 7 GLU C 106 ? GLU A 106 . ? 1_555 ? 8 AC2 7 POP K . ? POP A 405 . ? 1_555 ? 9 AC2 7 HOH N . ? HOH A 465 . ? 1_555 ? 10 AC2 7 HOH N . ? HOH A 492 . ? 1_555 ? 11 AC2 7 HOH N . ? HOH A 500 . ? 1_555 ? 12 AC2 7 DT A 14 ? DT D 14 . ? 1_555 ? 13 AC3 10 LYS C 78 ? LYS A 78 . ? 1_555 ? 14 AC3 10 GLU C 79 ? GLU A 79 . ? 1_555 ? 15 AC3 10 ARG C 247 ? ARG A 247 . ? 1_555 ? 16 AC3 10 GLU C 271 ? GLU A 271 . ? 1_555 ? 17 AC3 10 TYR C 274 ? TYR A 274 . ? 1_555 ? 18 AC3 10 LYS C 275 ? LYS A 275 . ? 1_555 ? 19 AC3 10 DG B 5 ? DG E 106 . ? 1_555 ? 20 AC3 10 GOL F . ? GOL E 409 . ? 1_555 ? 21 AC3 10 HOH M . ? HOH E 1108 . ? 1_555 ? 22 AC3 10 HOH M . ? HOH E 1114 . ? 1_555 ? 23 AC4 2 DT B 12 ? DT E 113 . ? 1_555 ? 24 AC4 2 DC B 13 ? DC E 114 . ? 1_555 ? 25 AC5 4 SER C 338 ? SER A 338 . ? 1_555 ? 26 AC5 4 LYS C 339 ? LYS A 339 . ? 1_555 ? 27 AC5 4 HOH N . ? HOH A 534 . ? 1_555 ? 28 AC5 4 HOH N . ? HOH A 539 . ? 1_555 ? 29 AC6 3 TYR C 274 ? TYR A 274 . ? 1_555 ? 30 AC6 3 HOH N . ? HOH A 541 . ? 1_555 ? 31 AC6 3 GOL F . ? GOL E 409 . ? 1_555 ? 32 AC7 16 ASP C 7 ? ASP A 7 . ? 1_555 ? 33 AC7 16 PHE C 8 ? PHE A 8 . ? 1_555 ? 34 AC7 16 ASP C 9 ? ASP A 9 . ? 1_555 ? 35 AC7 16 TYR C 10 ? TYR A 10 . ? 1_555 ? 36 AC7 16 PHE C 11 ? PHE A 11 . ? 1_555 ? 37 AC7 16 THR C 45 ? THR A 45 . ? 1_555 ? 38 AC7 16 TYR C 48 ? TYR A 48 . ? 1_555 ? 39 AC7 16 ARG C 51 ? ARG A 51 . ? 1_555 ? 40 AC7 16 ASP C 105 ? ASP A 105 . ? 1_555 ? 41 AC7 16 LYS C 159 ? LYS A 159 . ? 1_555 ? 42 AC7 16 CA G . ? CA A 401 . ? 1_555 ? 43 AC7 16 CA H . ? CA A 402 . ? 1_555 ? 44 AC7 16 HOH N . ? HOH A 415 . ? 1_555 ? 45 AC7 16 HOH N . ? HOH A 420 . ? 1_555 ? 46 AC7 16 HOH N . ? HOH A 500 . ? 1_555 ? 47 AC7 16 HOH N . ? HOH A 538 . ? 1_555 ? 48 AC8 4 GLU C 79 ? GLU A 79 . ? 1_555 ? 49 AC8 4 EDO J . ? EDO A 408 . ? 1_555 ? 50 AC8 4 DG B 5 ? DG E 106 . ? 1_555 ? 51 AC8 4 BAP D . ? BAP E 1106 . ? 1_555 ? # _database_PDB_matrix.entry_id 2IBK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IBK _atom_sites.fract_transf_matrix[1][1] 0.010340 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009953 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019109 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G D . n A 1 2 DG 2 2 2 DG G D . n A 1 3 DG 3 3 3 DG G D . n A 1 4 DG 4 4 4 DG G D . n A 1 5 DG 5 5 5 DG G D . n A 1 6 DA 6 6 6 DA A D . n A 1 7 DA 7 7 7 DA A D . n A 1 8 DG 8 8 8 DG G D . n A 1 9 DG 9 9 9 DG G D . n A 1 10 DA 10 10 10 DA A D . n A 1 11 DT 11 11 11 DT T D . n A 1 12 DT 12 12 12 DT T D . n A 1 13 DA 13 13 13 DA A D . n A 1 14 DT 14 14 14 DT T D . n B 2 1 DT 1 102 102 DT T E . n B 2 2 DC 2 103 103 DC C E . n B 2 3 DA 3 104 104 DA A E . n B 2 4 DT 4 105 105 DT T E . n B 2 5 DG 5 106 106 DG G E . n B 2 6 DA 6 107 107 DA A E . n B 2 7 DA 7 108 108 DA A E . n B 2 8 DT 8 109 109 DT T E . n B 2 9 DC 9 110 110 DC C E . n B 2 10 DC 10 111 111 DC C E . n B 2 11 DT 11 112 112 DT T E . n B 2 12 DT 12 113 113 DT T E . n B 2 13 DC 13 114 114 DC C E . n B 2 14 DC 14 115 115 DC C E . n B 2 15 DC 15 116 116 DC C E . n B 2 16 DC 16 117 117 DC C E . n B 2 17 DC 17 118 118 DC C E . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 ILE 2 2 2 ILE ILE A . n C 3 3 VAL 3 3 3 VAL VAL A . n C 3 4 LEU 4 4 4 LEU LEU A . n C 3 5 PHE 5 5 5 PHE PHE A . n C 3 6 VAL 6 6 6 VAL VAL A . n C 3 7 ASP 7 7 7 ASP ASP A . n C 3 8 PHE 8 8 8 PHE PHE A . n C 3 9 ASP 9 9 9 ASP ASP A . n C 3 10 TYR 10 10 10 TYR TYR A . n C 3 11 PHE 11 11 11 PHE PHE A . n C 3 12 TYR 12 12 12 TYR TYR A . n C 3 13 ALA 13 13 13 ALA ALA A . n C 3 14 GLN 14 14 14 GLN GLN A . n C 3 15 VAL 15 15 15 VAL VAL A . n C 3 16 GLU 16 16 16 GLU GLU A . n C 3 17 GLU 17 17 17 GLU GLU A . n C 3 18 VAL 18 18 18 VAL VAL A . n C 3 19 LEU 19 19 19 LEU LEU A . n C 3 20 ASN 20 20 20 ASN ASN A . n C 3 21 PRO 21 21 21 PRO PRO A . n C 3 22 SER 22 22 22 SER SER A . n C 3 23 LEU 23 23 23 LEU LEU A . n C 3 24 LYS 24 24 24 LYS LYS A . n C 3 25 GLY 25 25 25 GLY GLY A . n C 3 26 LYS 26 26 26 LYS LYS A . n C 3 27 PRO 27 27 27 PRO PRO A . n C 3 28 VAL 28 28 28 VAL VAL A . n C 3 29 VAL 29 29 29 VAL VAL A . n C 3 30 VAL 30 30 30 VAL VAL A . n C 3 31 CYS 31 31 31 CYS CYS A . n C 3 32 VAL 32 32 32 VAL VAL A . n C 3 33 PHE 33 33 33 PHE PHE A . n C 3 34 SER 34 34 34 SER SER A . n C 3 35 GLY 35 35 35 GLY GLY A . n C 3 36 ARG 36 36 36 ARG ARG A . n C 3 37 PHE 37 37 37 PHE PHE A . n C 3 38 GLU 38 38 38 GLU GLU A . n C 3 39 ASP 39 39 39 ASP ASP A . n C 3 40 SER 40 40 40 SER SER A . n C 3 41 GLY 41 41 41 GLY GLY A . n C 3 42 ALA 42 42 42 ALA ALA A . n C 3 43 VAL 43 43 43 VAL VAL A . n C 3 44 ALA 44 44 44 ALA ALA A . n C 3 45 THR 45 45 45 THR THR A . n C 3 46 ALA 46 46 46 ALA ALA A . n C 3 47 ASN 47 47 47 ASN ASN A . n C 3 48 TYR 48 48 48 TYR TYR A . n C 3 49 GLU 49 49 49 GLU GLU A . n C 3 50 ALA 50 50 50 ALA ALA A . n C 3 51 ARG 51 51 51 ARG ARG A . n C 3 52 LYS 52 52 52 LYS LYS A . n C 3 53 PHE 53 53 53 PHE PHE A . n C 3 54 GLY 54 54 54 GLY GLY A . n C 3 55 VAL 55 55 55 VAL VAL A . n C 3 56 LYS 56 56 56 LYS LYS A . n C 3 57 ALA 57 57 57 ALA ALA A . n C 3 58 GLY 58 58 58 GLY GLY A . n C 3 59 ILE 59 59 59 ILE ILE A . n C 3 60 PRO 60 60 60 PRO PRO A . n C 3 61 ILE 61 61 61 ILE ILE A . n C 3 62 VAL 62 62 62 VAL VAL A . n C 3 63 GLU 63 63 63 GLU GLU A . n C 3 64 ALA 64 64 64 ALA ALA A . n C 3 65 LYS 65 65 65 LYS LYS A . n C 3 66 LYS 66 66 66 LYS LYS A . n C 3 67 ILE 67 67 67 ILE ILE A . n C 3 68 LEU 68 68 68 LEU LEU A . n C 3 69 PRO 69 69 69 PRO PRO A . n C 3 70 ASN 70 70 70 ASN ASN A . n C 3 71 ALA 71 71 71 ALA ALA A . n C 3 72 VAL 72 72 72 VAL VAL A . n C 3 73 TYR 73 73 73 TYR TYR A . n C 3 74 LEU 74 74 74 LEU LEU A . n C 3 75 PRO 75 75 75 PRO PRO A . n C 3 76 MET 76 76 76 MET MET A . n C 3 77 ARG 77 77 77 ARG ARG A . n C 3 78 LYS 78 78 78 LYS LYS A . n C 3 79 GLU 79 79 79 GLU GLU A . n C 3 80 VAL 80 80 80 VAL VAL A . n C 3 81 TYR 81 81 81 TYR TYR A . n C 3 82 GLN 82 82 82 GLN GLN A . n C 3 83 GLN 83 83 83 GLN GLN A . n C 3 84 VAL 84 84 84 VAL VAL A . n C 3 85 SER 85 85 85 SER SER A . n C 3 86 SER 86 86 86 SER SER A . n C 3 87 ARG 87 87 87 ARG ARG A . n C 3 88 ILE 88 88 88 ILE ILE A . n C 3 89 MET 89 89 89 MET MET A . n C 3 90 ASN 90 90 90 ASN ASN A . n C 3 91 LEU 91 91 91 LEU LEU A . n C 3 92 LEU 92 92 92 LEU LEU A . n C 3 93 ARG 93 93 93 ARG ARG A . n C 3 94 GLU 94 94 94 GLU GLU A . n C 3 95 TYR 95 95 95 TYR TYR A . n C 3 96 SER 96 96 96 SER SER A . n C 3 97 GLU 97 97 97 GLU GLU A . n C 3 98 LYS 98 98 98 LYS LYS A . n C 3 99 ILE 99 99 99 ILE ILE A . n C 3 100 GLU 100 100 100 GLU GLU A . n C 3 101 ILE 101 101 101 ILE ILE A . n C 3 102 ALA 102 102 102 ALA ALA A . n C 3 103 SER 103 103 103 SER SER A . n C 3 104 ILE 104 104 104 ILE ILE A . n C 3 105 ASP 105 105 105 ASP ASP A . n C 3 106 GLU 106 106 106 GLU GLU A . n C 3 107 ALA 107 107 107 ALA ALA A . n C 3 108 TYR 108 108 108 TYR TYR A . n C 3 109 LEU 109 109 109 LEU LEU A . n C 3 110 ASP 110 110 110 ASP ASP A . n C 3 111 ILE 111 111 111 ILE ILE A . n C 3 112 SER 112 112 112 SER SER A . n C 3 113 ASP 113 113 113 ASP ASP A . n C 3 114 LYS 114 114 114 LYS LYS A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 ARG 116 116 116 ARG ARG A . n C 3 117 ASP 117 117 117 ASP ASP A . n C 3 118 TYR 118 118 118 TYR TYR A . n C 3 119 ARG 119 119 119 ARG ARG A . n C 3 120 GLU 120 120 120 GLU GLU A . n C 3 121 ALA 121 121 121 ALA ALA A . n C 3 122 TYR 122 122 122 TYR TYR A . n C 3 123 ASN 123 123 123 ASN ASN A . n C 3 124 LEU 124 124 124 LEU LEU A . n C 3 125 GLY 125 125 125 GLY GLY A . n C 3 126 LEU 126 126 126 LEU LEU A . n C 3 127 GLU 127 127 127 GLU GLU A . n C 3 128 ILE 128 128 128 ILE ILE A . n C 3 129 LYS 129 129 129 LYS LYS A . n C 3 130 ASN 130 130 130 ASN ASN A . n C 3 131 LYS 131 131 131 LYS LYS A . n C 3 132 ILE 132 132 132 ILE ILE A . n C 3 133 LEU 133 133 133 LEU LEU A . n C 3 134 GLU 134 134 134 GLU GLU A . n C 3 135 LYS 135 135 135 LYS LYS A . n C 3 136 GLU 136 136 136 GLU GLU A . n C 3 137 LYS 137 137 137 LYS LYS A . n C 3 138 ILE 138 138 138 ILE ILE A . n C 3 139 THR 139 139 139 THR THR A . n C 3 140 VAL 140 140 140 VAL VAL A . n C 3 141 THR 141 141 141 THR THR A . n C 3 142 VAL 142 142 142 VAL VAL A . n C 3 143 GLY 143 143 143 GLY GLY A . n C 3 144 ILE 144 144 144 ILE ILE A . n C 3 145 SER 145 145 145 SER SER A . n C 3 146 LYS 146 146 146 LYS LYS A . n C 3 147 ASN 147 147 147 ASN ASN A . n C 3 148 LYS 148 148 148 LYS LYS A . n C 3 149 VAL 149 149 149 VAL VAL A . n C 3 150 PHE 150 150 150 PHE PHE A . n C 3 151 ALA 151 151 151 ALA ALA A . n C 3 152 LYS 152 152 152 LYS LYS A . n C 3 153 ILE 153 153 153 ILE ILE A . n C 3 154 ALA 154 154 154 ALA ALA A . n C 3 155 ALA 155 155 155 ALA ALA A . n C 3 156 ASP 156 156 156 ASP ASP A . n C 3 157 MET 157 157 157 MET MET A . n C 3 158 ALA 158 158 158 ALA ALA A . n C 3 159 LYS 159 159 159 LYS LYS A . n C 3 160 PRO 160 160 160 PRO PRO A . n C 3 161 ASN 161 161 161 ASN ASN A . n C 3 162 GLY 162 162 162 GLY GLY A . n C 3 163 ILE 163 163 163 ILE ILE A . n C 3 164 LYS 164 164 164 LYS LYS A . n C 3 165 VAL 165 165 165 VAL VAL A . n C 3 166 ILE 166 166 166 ILE ILE A . n C 3 167 ASP 167 167 167 ASP ASP A . n C 3 168 ASP 168 168 168 ASP ASP A . n C 3 169 GLU 169 169 169 GLU GLU A . n C 3 170 GLU 170 170 170 GLU GLU A . n C 3 171 VAL 171 171 171 VAL VAL A . n C 3 172 LYS 172 172 172 LYS LYS A . n C 3 173 ARG 173 173 173 ARG ARG A . n C 3 174 LEU 174 174 174 LEU LEU A . n C 3 175 ILE 175 175 175 ILE ILE A . n C 3 176 ARG 176 176 176 ARG ARG A . n C 3 177 GLU 177 177 177 GLU GLU A . n C 3 178 LEU 178 178 178 LEU LEU A . n C 3 179 ASP 179 179 179 ASP ASP A . n C 3 180 ILE 180 180 180 ILE ILE A . n C 3 181 ALA 181 181 181 ALA ALA A . n C 3 182 ASP 182 182 182 ASP ASP A . n C 3 183 VAL 183 183 183 VAL VAL A . n C 3 184 PRO 184 184 184 PRO PRO A . n C 3 185 GLY 185 185 185 GLY GLY A . n C 3 186 ILE 186 186 186 ILE ILE A . n C 3 187 GLY 187 187 187 GLY GLY A . n C 3 188 ASN 188 188 188 ASN ASN A . n C 3 189 ILE 189 189 189 ILE ILE A . n C 3 190 THR 190 190 190 THR THR A . n C 3 191 ALA 191 191 191 ALA ALA A . n C 3 192 GLU 192 192 192 GLU GLU A . n C 3 193 LYS 193 193 193 LYS LYS A . n C 3 194 LEU 194 194 194 LEU LEU A . n C 3 195 LYS 195 195 195 LYS LYS A . n C 3 196 LYS 196 196 196 LYS LYS A . n C 3 197 LEU 197 197 197 LEU LEU A . n C 3 198 GLY 198 198 198 GLY GLY A . n C 3 199 ILE 199 199 199 ILE ILE A . n C 3 200 ASN 200 200 200 ASN ASN A . n C 3 201 LYS 201 201 201 LYS LYS A . n C 3 202 LEU 202 202 202 LEU LEU A . n C 3 203 VAL 203 203 203 VAL VAL A . n C 3 204 ASP 204 204 204 ASP ASP A . n C 3 205 THR 205 205 205 THR THR A . n C 3 206 LEU 206 206 206 LEU LEU A . n C 3 207 SER 207 207 207 SER SER A . n C 3 208 ILE 208 208 208 ILE ILE A . n C 3 209 GLU 209 209 209 GLU GLU A . n C 3 210 PHE 210 210 210 PHE PHE A . n C 3 211 ASP 211 211 211 ASP ASP A . n C 3 212 LYS 212 212 212 LYS LYS A . n C 3 213 LEU 213 213 213 LEU LEU A . n C 3 214 LYS 214 214 214 LYS LYS A . n C 3 215 GLY 215 215 215 GLY GLY A . n C 3 216 MET 216 216 216 MET MET A . n C 3 217 ILE 217 217 217 ILE ILE A . n C 3 218 GLY 218 218 218 GLY GLY A . n C 3 219 GLU 219 219 219 GLU GLU A . n C 3 220 ALA 220 220 220 ALA ALA A . n C 3 221 LYS 221 221 221 LYS LYS A . n C 3 222 ALA 222 222 222 ALA ALA A . n C 3 223 LYS 223 223 223 LYS LYS A . n C 3 224 TYR 224 224 224 TYR TYR A . n C 3 225 LEU 225 225 225 LEU LEU A . n C 3 226 ILE 226 226 226 ILE ILE A . n C 3 227 SER 227 227 227 SER SER A . n C 3 228 LEU 228 228 228 LEU LEU A . n C 3 229 ALA 229 229 229 ALA ALA A . n C 3 230 ARG 230 230 230 ARG ARG A . n C 3 231 ASP 231 231 231 ASP ASP A . n C 3 232 GLU 232 232 232 GLU GLU A . n C 3 233 TYR 233 233 233 TYR TYR A . n C 3 234 ASN 234 234 234 ASN ASN A . n C 3 235 GLU 235 235 235 GLU GLU A . n C 3 236 PRO 236 236 236 PRO PRO A . n C 3 237 ILE 237 237 237 ILE ILE A . n C 3 238 ARG 238 238 238 ARG ARG A . n C 3 239 THR 239 239 239 THR THR A . n C 3 240 ARG 240 240 240 ARG ARG A . n C 3 241 VAL 241 241 241 VAL VAL A . n C 3 242 ARG 242 242 242 ARG ARG A . n C 3 243 LYS 243 243 243 LYS LYS A . n C 3 244 SER 244 244 244 SER SER A . n C 3 245 ILE 245 245 245 ILE ILE A . n C 3 246 GLY 246 246 246 GLY GLY A . n C 3 247 ARG 247 247 247 ARG ARG A . n C 3 248 ILE 248 248 248 ILE ILE A . n C 3 249 VAL 249 249 249 VAL VAL A . n C 3 250 THR 250 250 250 THR THR A . n C 3 251 MET 251 251 251 MET MET A . n C 3 252 LYS 252 252 252 LYS LYS A . n C 3 253 ARG 253 253 253 ARG ARG A . n C 3 254 ASN 254 254 254 ASN ASN A . n C 3 255 SER 255 255 255 SER SER A . n C 3 256 ARG 256 256 256 ARG ARG A . n C 3 257 ASN 257 257 257 ASN ASN A . n C 3 258 LEU 258 258 258 LEU LEU A . n C 3 259 GLU 259 259 259 GLU GLU A . n C 3 260 GLU 260 260 260 GLU GLU A . n C 3 261 ILE 261 261 261 ILE ILE A . n C 3 262 LYS 262 262 262 LYS LYS A . n C 3 263 PRO 263 263 263 PRO PRO A . n C 3 264 TYR 264 264 264 TYR TYR A . n C 3 265 LEU 265 265 265 LEU LEU A . n C 3 266 PHE 266 266 266 PHE PHE A . n C 3 267 ARG 267 267 267 ARG ARG A . n C 3 268 ALA 268 268 268 ALA ALA A . n C 3 269 ILE 269 269 269 ILE ILE A . n C 3 270 GLU 270 270 270 GLU GLU A . n C 3 271 GLU 271 271 271 GLU GLU A . n C 3 272 SER 272 272 272 SER SER A . n C 3 273 TYR 273 273 273 TYR TYR A . n C 3 274 TYR 274 274 274 TYR TYR A . n C 3 275 LYS 275 275 275 LYS LYS A . n C 3 276 LEU 276 276 276 LEU LEU A . n C 3 277 ASP 277 277 277 ASP ASP A . n C 3 278 LYS 278 278 278 LYS LYS A . n C 3 279 ARG 279 279 279 ARG ARG A . n C 3 280 ILE 280 280 280 ILE ILE A . n C 3 281 PRO 281 281 281 PRO PRO A . n C 3 282 LYS 282 282 282 LYS LYS A . n C 3 283 ALA 283 283 283 ALA ALA A . n C 3 284 ILE 284 284 284 ILE ILE A . n C 3 285 HIS 285 285 285 HIS HIS A . n C 3 286 VAL 286 286 286 VAL VAL A . n C 3 287 VAL 287 287 287 VAL VAL A . n C 3 288 ALA 288 288 288 ALA ALA A . n C 3 289 VAL 289 289 289 VAL VAL A . n C 3 290 THR 290 290 290 THR THR A . n C 3 291 GLU 291 291 291 GLU GLU A . n C 3 292 ASP 292 292 292 ASP ASP A . n C 3 293 LEU 293 293 293 LEU LEU A . n C 3 294 ASP 294 294 294 ASP ASP A . n C 3 295 ILE 295 295 295 ILE ILE A . n C 3 296 VAL 296 296 296 VAL VAL A . n C 3 297 SER 297 297 297 SER SER A . n C 3 298 ARG 298 298 298 ARG ARG A . n C 3 299 GLY 299 299 299 GLY GLY A . n C 3 300 ARG 300 300 300 ARG ARG A . n C 3 301 THR 301 301 301 THR THR A . n C 3 302 PHE 302 302 302 PHE PHE A . n C 3 303 PRO 303 303 303 PRO PRO A . n C 3 304 HIS 304 304 304 HIS HIS A . n C 3 305 GLY 305 305 305 GLY GLY A . n C 3 306 ILE 306 306 306 ILE ILE A . n C 3 307 SER 307 307 307 SER SER A . n C 3 308 LYS 308 308 308 LYS LYS A . n C 3 309 GLU 309 309 309 GLU GLU A . n C 3 310 THR 310 310 310 THR THR A . n C 3 311 ALA 311 311 311 ALA ALA A . n C 3 312 TYR 312 312 312 TYR TYR A . n C 3 313 SER 313 313 313 SER SER A . n C 3 314 GLU 314 314 314 GLU GLU A . n C 3 315 SER 315 315 315 SER SER A . n C 3 316 VAL 316 316 316 VAL VAL A . n C 3 317 LYS 317 317 317 LYS LYS A . n C 3 318 LEU 318 318 318 LEU LEU A . n C 3 319 LEU 319 319 319 LEU LEU A . n C 3 320 GLN 320 320 320 GLN GLN A . n C 3 321 LYS 321 321 321 LYS LYS A . n C 3 322 ILE 322 322 322 ILE ILE A . n C 3 323 LEU 323 323 323 LEU LEU A . n C 3 324 GLU 324 324 324 GLU GLU A . n C 3 325 GLU 325 325 325 GLU GLU A . n C 3 326 ASP 326 326 326 ASP ASP A . n C 3 327 GLU 327 327 327 GLU GLU A . n C 3 328 ARG 328 328 328 ARG ARG A . n C 3 329 LYS 329 329 329 LYS LYS A . n C 3 330 ILE 330 330 330 ILE ILE A . n C 3 331 ARG 331 331 331 ARG ARG A . n C 3 332 ARG 332 332 332 ARG ARG A . n C 3 333 ILE 333 333 333 ILE ILE A . n C 3 334 GLY 334 334 334 GLY GLY A . n C 3 335 VAL 335 335 335 VAL VAL A . n C 3 336 ARG 336 336 336 ARG ARG A . n C 3 337 PHE 337 337 337 PHE PHE A . n C 3 338 SER 338 338 338 SER SER A . n C 3 339 LYS 339 339 339 LYS LYS A . n C 3 340 PHE 340 340 340 PHE PHE A . n C 3 341 ILE 341 341 341 ILE ILE A . n C 3 342 GLU 342 342 ? ? ? A . n C 3 343 ALA 343 343 ? ? ? A . n C 3 344 ILE 344 344 ? ? ? A . n C 3 345 GLY 345 345 ? ? ? A . n C 3 346 LEU 346 346 ? ? ? A . n C 3 347 ASP 347 347 ? ? ? A . n C 3 348 LYS 348 348 ? ? ? A . n C 3 349 PHE 349 349 ? ? ? A . n C 3 350 PHE 350 350 ? ? ? A . n C 3 351 ASP 351 351 ? ? ? A . n C 3 352 THR 352 352 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BAP 1 1106 1106 BAP BAP E . E 5 EDO 1 406 406 EDO EDO E . F 6 GOL 1 409 409 GOL GOL E . G 7 CA 1 401 401 CA CA A . H 7 CA 1 402 402 CA CA A . I 5 EDO 1 407 407 EDO EDO A . J 5 EDO 1 408 408 EDO EDO A . K 8 POP 1 405 405 POP POP A . L 9 HOH 1 15 9 HOH HOH D . L 9 HOH 2 16 10 HOH HOH D . L 9 HOH 3 17 11 HOH HOH D . L 9 HOH 4 18 28 HOH HOH D . L 9 HOH 5 19 35 HOH HOH D . L 9 HOH 6 20 43 HOH HOH D . L 9 HOH 7 21 61 HOH HOH D . L 9 HOH 8 22 69 HOH HOH D . L 9 HOH 9 23 70 HOH HOH D . L 9 HOH 10 24 71 HOH HOH D . L 9 HOH 11 25 128 HOH HOH D . L 9 HOH 12 26 130 HOH HOH D . L 9 HOH 13 27 138 HOH HOH D . L 9 HOH 14 28 140 HOH HOH D . L 9 HOH 15 29 141 HOH HOH D . L 9 HOH 16 30 147 HOH HOH D . L 9 HOH 17 31 153 HOH HOH D . L 9 HOH 18 32 155 HOH HOH D . L 9 HOH 19 33 159 HOH HOH D . L 9 HOH 20 34 160 HOH HOH D . L 9 HOH 21 35 163 HOH HOH D . L 9 HOH 22 36 164 HOH HOH D . L 9 HOH 23 37 165 HOH HOH D . L 9 HOH 24 38 171 HOH HOH D . L 9 HOH 25 39 177 HOH HOH D . L 9 HOH 26 40 181 HOH HOH D . L 9 HOH 27 41 190 HOH HOH D . L 9 HOH 28 42 191 HOH HOH D . L 9 HOH 29 43 200 HOH HOH D . L 9 HOH 30 44 201 HOH HOH D . L 9 HOH 31 45 206 HOH HOH D . M 9 HOH 1 1107 4 HOH HOH E . M 9 HOH 2 1108 13 HOH HOH E . M 9 HOH 3 1109 19 HOH HOH E . M 9 HOH 4 1110 21 HOH HOH E . M 9 HOH 5 1111 31 HOH HOH E . M 9 HOH 6 1112 37 HOH HOH E . M 9 HOH 7 1113 45 HOH HOH E . M 9 HOH 8 1114 60 HOH HOH E . M 9 HOH 9 1115 62 HOH HOH E . M 9 HOH 10 1116 63 HOH HOH E . M 9 HOH 11 1117 64 HOH HOH E . M 9 HOH 12 1118 66 HOH HOH E . M 9 HOH 13 1119 67 HOH HOH E . M 9 HOH 14 1120 90 HOH HOH E . M 9 HOH 15 1121 116 HOH HOH E . M 9 HOH 16 1122 120 HOH HOH E . M 9 HOH 17 1123 126 HOH HOH E . M 9 HOH 18 1124 143 HOH HOH E . M 9 HOH 19 1125 144 HOH HOH E . M 9 HOH 20 1126 148 HOH HOH E . M 9 HOH 21 1127 150 HOH HOH E . M 9 HOH 22 1128 152 HOH HOH E . M 9 HOH 23 1129 158 HOH HOH E . M 9 HOH 24 1130 166 HOH HOH E . M 9 HOH 25 1131 168 HOH HOH E . M 9 HOH 26 1132 172 HOH HOH E . M 9 HOH 27 1133 173 HOH HOH E . M 9 HOH 28 1134 180 HOH HOH E . M 9 HOH 29 1135 183 HOH HOH E . M 9 HOH 30 1136 184 HOH HOH E . M 9 HOH 31 1137 192 HOH HOH E . M 9 HOH 32 1138 193 HOH HOH E . M 9 HOH 33 1139 194 HOH HOH E . M 9 HOH 34 1140 195 HOH HOH E . N 9 HOH 1 409 1 HOH HOH A . N 9 HOH 2 410 2 HOH HOH A . N 9 HOH 3 411 3 HOH HOH A . N 9 HOH 4 412 5 HOH HOH A . N 9 HOH 5 413 6 HOH HOH A . N 9 HOH 6 414 7 HOH HOH A . N 9 HOH 7 415 8 HOH HOH A . N 9 HOH 8 416 12 HOH HOH A . N 9 HOH 9 417 14 HOH HOH A . N 9 HOH 10 418 15 HOH HOH A . N 9 HOH 11 419 17 HOH HOH A . N 9 HOH 12 420 18 HOH HOH A . N 9 HOH 13 421 20 HOH HOH A . N 9 HOH 14 422 22 HOH HOH A . N 9 HOH 15 423 23 HOH HOH A . N 9 HOH 16 424 24 HOH HOH A . N 9 HOH 17 425 25 HOH HOH A . N 9 HOH 18 426 26 HOH HOH A . N 9 HOH 19 427 27 HOH HOH A . N 9 HOH 20 428 29 HOH HOH A . N 9 HOH 21 429 30 HOH HOH A . N 9 HOH 22 430 32 HOH HOH A . N 9 HOH 23 431 33 HOH HOH A . N 9 HOH 24 432 34 HOH HOH A . N 9 HOH 25 433 36 HOH HOH A . N 9 HOH 26 434 38 HOH HOH A . N 9 HOH 27 435 39 HOH HOH A . N 9 HOH 28 436 40 HOH HOH A . N 9 HOH 29 437 41 HOH HOH A . N 9 HOH 30 438 42 HOH HOH A . N 9 HOH 31 439 44 HOH HOH A . N 9 HOH 32 440 46 HOH HOH A . N 9 HOH 33 441 47 HOH HOH A . N 9 HOH 34 442 48 HOH HOH A . N 9 HOH 35 443 49 HOH HOH A . N 9 HOH 36 444 50 HOH HOH A . N 9 HOH 37 445 51 HOH HOH A . N 9 HOH 38 446 52 HOH HOH A . N 9 HOH 39 447 53 HOH HOH A . N 9 HOH 40 448 54 HOH HOH A . N 9 HOH 41 449 55 HOH HOH A . N 9 HOH 42 450 56 HOH HOH A . N 9 HOH 43 451 57 HOH HOH A . N 9 HOH 44 452 58 HOH HOH A . N 9 HOH 45 453 59 HOH HOH A . N 9 HOH 46 454 65 HOH HOH A . N 9 HOH 47 455 68 HOH HOH A . N 9 HOH 48 456 72 HOH HOH A . N 9 HOH 49 457 73 HOH HOH A . N 9 HOH 50 458 74 HOH HOH A . N 9 HOH 51 459 75 HOH HOH A . N 9 HOH 52 460 76 HOH HOH A . N 9 HOH 53 461 77 HOH HOH A . N 9 HOH 54 462 78 HOH HOH A . N 9 HOH 55 463 79 HOH HOH A . N 9 HOH 56 464 80 HOH HOH A . N 9 HOH 57 465 81 HOH HOH A . N 9 HOH 58 466 82 HOH HOH A . N 9 HOH 59 467 83 HOH HOH A . N 9 HOH 60 468 84 HOH HOH A . N 9 HOH 61 469 85 HOH HOH A . N 9 HOH 62 470 86 HOH HOH A . N 9 HOH 63 471 87 HOH HOH A . N 9 HOH 64 472 88 HOH HOH A . N 9 HOH 65 473 92 HOH HOH A . N 9 HOH 66 474 93 HOH HOH A . N 9 HOH 67 475 95 HOH HOH A . N 9 HOH 68 476 96 HOH HOH A . N 9 HOH 69 477 97 HOH HOH A . N 9 HOH 70 478 98 HOH HOH A . N 9 HOH 71 479 99 HOH HOH A . N 9 HOH 72 480 100 HOH HOH A . N 9 HOH 73 481 101 HOH HOH A . N 9 HOH 74 482 102 HOH HOH A . N 9 HOH 75 483 104 HOH HOH A . N 9 HOH 76 484 105 HOH HOH A . N 9 HOH 77 485 106 HOH HOH A . N 9 HOH 78 486 107 HOH HOH A . N 9 HOH 79 487 108 HOH HOH A . N 9 HOH 80 488 109 HOH HOH A . N 9 HOH 81 489 110 HOH HOH A . N 9 HOH 82 490 111 HOH HOH A . N 9 HOH 83 491 112 HOH HOH A . N 9 HOH 84 492 113 HOH HOH A . N 9 HOH 85 493 114 HOH HOH A . N 9 HOH 86 494 115 HOH HOH A . N 9 HOH 87 495 117 HOH HOH A . N 9 HOH 88 496 118 HOH HOH A . N 9 HOH 89 497 119 HOH HOH A . N 9 HOH 90 498 121 HOH HOH A . N 9 HOH 91 499 122 HOH HOH A . N 9 HOH 92 500 123 HOH HOH A . N 9 HOH 93 501 124 HOH HOH A . N 9 HOH 94 502 125 HOH HOH A . N 9 HOH 95 503 127 HOH HOH A . N 9 HOH 96 504 129 HOH HOH A . N 9 HOH 97 505 131 HOH HOH A . N 9 HOH 98 506 132 HOH HOH A . N 9 HOH 99 507 133 HOH HOH A . N 9 HOH 100 508 134 HOH HOH A . N 9 HOH 101 509 135 HOH HOH A . N 9 HOH 102 510 137 HOH HOH A . N 9 HOH 103 511 139 HOH HOH A . N 9 HOH 104 512 142 HOH HOH A . N 9 HOH 105 513 145 HOH HOH A . N 9 HOH 106 514 146 HOH HOH A . N 9 HOH 107 515 149 HOH HOH A . N 9 HOH 108 516 154 HOH HOH A . N 9 HOH 109 517 156 HOH HOH A . N 9 HOH 110 518 157 HOH HOH A . N 9 HOH 111 519 161 HOH HOH A . N 9 HOH 112 520 162 HOH HOH A . N 9 HOH 113 521 167 HOH HOH A . N 9 HOH 114 522 169 HOH HOH A . N 9 HOH 115 523 170 HOH HOH A . N 9 HOH 116 524 174 HOH HOH A . N 9 HOH 117 525 175 HOH HOH A . N 9 HOH 118 526 176 HOH HOH A . N 9 HOH 119 527 178 HOH HOH A . N 9 HOH 120 528 179 HOH HOH A . N 9 HOH 121 529 182 HOH HOH A . N 9 HOH 122 530 185 HOH HOH A . N 9 HOH 123 531 186 HOH HOH A . N 9 HOH 124 532 187 HOH HOH A . N 9 HOH 125 533 188 HOH HOH A . N 9 HOH 126 534 189 HOH HOH A . N 9 HOH 127 535 196 HOH HOH A . N 9 HOH 128 536 197 HOH HOH A . N 9 HOH 129 537 198 HOH HOH A . N 9 HOH 130 538 199 HOH HOH A . N 9 HOH 131 539 204 HOH HOH A . N 9 HOH 132 540 205 HOH HOH A . N 9 HOH 133 541 207 HOH HOH A . N 9 HOH 134 542 208 HOH HOH A . N 9 HOH 135 543 209 HOH HOH A . N 9 HOH 136 544 210 HOH HOH A . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MAJOR GROOVE BINDER, COVALENT' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DT 14 ? D DT 14 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 OD1 ? C ASP 105 ? A ASP 105 ? 1_555 165.3 ? 2 OP1 ? A DT 14 ? D DT 14 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 93.2 ? 3 OD1 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 95.9 ? 4 OP1 ? A DT 14 ? D DT 14 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 465 ? 1_555 96.5 ? 5 OD1 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 465 ? 1_555 69.5 ? 6 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 465 ? 1_555 110.0 ? 7 OP1 ? A DT 14 ? D DT 14 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 492 ? 1_555 86.5 ? 8 OD1 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 492 ? 1_555 107.4 ? 9 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 492 ? 1_555 71.5 ? 10 O ? N HOH . ? A HOH 465 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 492 ? 1_555 176.6 ? 11 OP1 ? A DT 14 ? D DT 14 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 500 ? 1_555 84.8 ? 12 OD1 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 500 ? 1_555 86.3 ? 13 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 500 ? 1_555 177.7 ? 14 O ? N HOH . ? A HOH 465 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 500 ? 1_555 71.4 ? 15 O ? N HOH . ? A HOH 492 ? 1_555 CA ? H CA . ? A CA 402 ? 1_555 O ? N HOH . ? A HOH 500 ? 1_555 107.3 ? 16 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O ? C PHE 8 ? A PHE 8 ? 1_555 91.4 ? 17 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 106.9 ? 18 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 91.7 ? 19 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O2 ? K POP . ? A POP 405 ? 1_555 167.0 ? 20 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O2 ? K POP . ? A POP 405 ? 1_555 82.6 ? 21 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O2 ? K POP . ? A POP 405 ? 1_555 84.8 ? 22 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O5 ? K POP . ? A POP 405 ? 1_555 83.7 ? 23 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O5 ? K POP . ? A POP 405 ? 1_555 109.0 ? 24 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O5 ? K POP . ? A POP 405 ? 1_555 156.7 ? 25 O2 ? K POP . ? A POP 405 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O5 ? K POP . ? A POP 405 ? 1_555 87.4 ? 26 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O ? N HOH . ? A HOH 492 ? 1_555 69.8 ? 27 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O ? N HOH . ? A HOH 492 ? 1_555 158.7 ? 28 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O ? N HOH . ? A HOH 492 ? 1_555 84.6 ? 29 O2 ? K POP . ? A POP 405 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O ? N HOH . ? A HOH 492 ? 1_555 117.9 ? 30 O5 ? K POP . ? A POP 405 ? 1_555 CA ? G CA . ? A CA 401 ? 1_555 O ? N HOH . ? A HOH 492 ? 1_555 79.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_conn_type 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.value' 20 3 'Structure model' '_struct_conn.conn_type_id' 21 3 'Structure model' '_struct_conn.id' 22 3 'Structure model' '_struct_conn.pdbx_dist_value' 23 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 3 'Structure model' '_struct_conn_type.id' 38 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" E DC 103 ? ? "C1'" E DC 103 ? ? N1 E DC 103 ? ? 110.24 108.30 1.94 0.30 N 2 1 "O3'" E DT 105 ? ? P E DG 106 ? ? "O5'" E DG 106 ? ? 116.05 104.00 12.05 1.90 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 21.44 54.62 2 1 ARG A 77 ? ? -116.12 67.71 3 1 SER A 96 ? ? -177.89 128.13 4 1 SER A 145 ? ? -167.42 -167.94 5 1 ASN A 161 ? ? 38.87 41.63 6 1 ASN A 234 ? ? -154.03 44.48 7 1 ARG A 256 ? ? -143.03 18.99 8 1 ASP A 277 ? ? 39.87 75.87 9 1 LYS A 278 ? ? 82.70 -26.43 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id E _pdbx_unobs_or_zero_occ_atoms.auth_comp_id DC _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 118 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id "O3'" _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id DC _pdbx_unobs_or_zero_occ_atoms.label_seq_id 17 _pdbx_unobs_or_zero_occ_atoms.label_atom_id "O3'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 342 ? C GLU 342 2 1 Y 1 A ALA 343 ? C ALA 343 3 1 Y 1 A ILE 344 ? C ILE 344 4 1 Y 1 A GLY 345 ? C GLY 345 5 1 Y 1 A LEU 346 ? C LEU 346 6 1 Y 1 A ASP 347 ? C ASP 347 7 1 Y 1 A LYS 348 ? C LYS 348 8 1 Y 1 A PHE 349 ? C PHE 349 9 1 Y 1 A PHE 350 ? C PHE 350 10 1 Y 1 A ASP 351 ? C ASP 351 11 1 Y 1 A THR 352 ? C THR 352 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BAP C1 C Y N 74 BAP C2 C Y N 75 BAP C3 C Y N 76 BAP C3A C Y N 77 BAP C4 C Y N 78 BAP C5 C Y N 79 BAP C5A C Y N 80 BAP C6 C Y N 81 BAP C7 C Y N 82 BAP C8 C Y N 83 BAP C8A C Y N 84 BAP C9 C Y N 85 BAP C10 C Y N 86 BAP C1A C Y N 87 BAP C3B C Y N 88 BAP C5B C Y N 89 BAP "C1'" C N R 90 BAP "O1'" O N N 91 BAP "C2'" C N R 92 BAP "O2'" O N N 93 BAP "C3'" C N R 94 BAP "O3'" O N N 95 BAP "C4'" C N N 96 BAP H1 H N N 97 BAP H2 H N N 98 BAP H3 H N N 99 BAP H4 H N N 100 BAP H5 H N N 101 BAP H8 H N N 102 BAP H9 H N N 103 BAP H10 H N N 104 BAP "H1'" H N N 105 BAP HO1 H N N 106 BAP "H2'" H N N 107 BAP HO2 H N N 108 BAP "H3'" H N N 109 BAP HO3 H N N 110 BAP "H4'1" H N N 111 BAP "H4'2" H N N 112 CA CA CA N N 113 CYS N N N N 114 CYS CA C N R 115 CYS C C N N 116 CYS O O N N 117 CYS CB C N N 118 CYS SG S N N 119 CYS OXT O N N 120 CYS H H N N 121 CYS H2 H N N 122 CYS HA H N N 123 CYS HB2 H N N 124 CYS HB3 H N N 125 CYS HG H N N 126 CYS HXT H N N 127 DA OP3 O N N 128 DA P P N N 129 DA OP1 O N N 130 DA OP2 O N N 131 DA "O5'" O N N 132 DA "C5'" C N N 133 DA "C4'" C N R 134 DA "O4'" O N N 135 DA "C3'" C N S 136 DA "O3'" O N N 137 DA "C2'" C N N 138 DA "C1'" C N R 139 DA N9 N Y N 140 DA C8 C Y N 141 DA N7 N Y N 142 DA C5 C Y N 143 DA C6 C Y N 144 DA N6 N N N 145 DA N1 N Y N 146 DA C2 C Y N 147 DA N3 N Y N 148 DA C4 C Y N 149 DA HOP3 H N N 150 DA HOP2 H N N 151 DA "H5'" H N N 152 DA "H5''" H N N 153 DA "H4'" H N N 154 DA "H3'" H N N 155 DA "HO3'" H N N 156 DA "H2'" H N N 157 DA "H2''" H N N 158 DA "H1'" H N N 159 DA H8 H N N 160 DA H61 H N N 161 DA H62 H N N 162 DA H2 H N N 163 DC OP3 O N N 164 DC P P N N 165 DC OP1 O N N 166 DC OP2 O N N 167 DC "O5'" O N N 168 DC "C5'" C N N 169 DC "C4'" C N R 170 DC "O4'" O N N 171 DC "C3'" C N S 172 DC "O3'" O N N 173 DC "C2'" C N N 174 DC "C1'" C N R 175 DC N1 N N N 176 DC C2 C N N 177 DC O2 O N N 178 DC N3 N N N 179 DC C4 C N N 180 DC N4 N N N 181 DC C5 C N N 182 DC C6 C N N 183 DC HOP3 H N N 184 DC HOP2 H N N 185 DC "H5'" H N N 186 DC "H5''" H N N 187 DC "H4'" H N N 188 DC "H3'" H N N 189 DC "HO3'" H N N 190 DC "H2'" H N N 191 DC "H2''" H N N 192 DC "H1'" H N N 193 DC H41 H N N 194 DC H42 H N N 195 DC H5 H N N 196 DC H6 H N N 197 DG OP3 O N N 198 DG P P N N 199 DG OP1 O N N 200 DG OP2 O N N 201 DG "O5'" O N N 202 DG "C5'" C N N 203 DG "C4'" C N R 204 DG "O4'" O N N 205 DG "C3'" C N S 206 DG "O3'" O N N 207 DG "C2'" C N N 208 DG "C1'" C N R 209 DG N9 N Y N 210 DG C8 C Y N 211 DG N7 N Y N 212 DG C5 C Y N 213 DG C6 C N N 214 DG O6 O N N 215 DG N1 N N N 216 DG C2 C N N 217 DG N2 N N N 218 DG N3 N N N 219 DG C4 C Y N 220 DG HOP3 H N N 221 DG HOP2 H N N 222 DG "H5'" H N N 223 DG "H5''" H N N 224 DG "H4'" H N N 225 DG "H3'" H N N 226 DG "HO3'" H N N 227 DG "H2'" H N N 228 DG "H2''" H N N 229 DG "H1'" H N N 230 DG H8 H N N 231 DG H1 H N N 232 DG H21 H N N 233 DG H22 H N N 234 DT OP3 O N N 235 DT P P N N 236 DT OP1 O N N 237 DT OP2 O N N 238 DT "O5'" O N N 239 DT "C5'" C N N 240 DT "C4'" C N R 241 DT "O4'" O N N 242 DT "C3'" C N S 243 DT "O3'" O N N 244 DT "C2'" C N N 245 DT "C1'" C N R 246 DT N1 N N N 247 DT C2 C N N 248 DT O2 O N N 249 DT N3 N N N 250 DT C4 C N N 251 DT O4 O N N 252 DT C5 C N N 253 DT C7 C N N 254 DT C6 C N N 255 DT HOP3 H N N 256 DT HOP2 H N N 257 DT "H5'" H N N 258 DT "H5''" H N N 259 DT "H4'" H N N 260 DT "H3'" H N N 261 DT "HO3'" H N N 262 DT "H2'" H N N 263 DT "H2''" H N N 264 DT "H1'" H N N 265 DT H3 H N N 266 DT H71 H N N 267 DT H72 H N N 268 DT H73 H N N 269 DT H6 H N N 270 EDO C1 C N N 271 EDO O1 O N N 272 EDO C2 C N N 273 EDO O2 O N N 274 EDO H11 H N N 275 EDO H12 H N N 276 EDO HO1 H N N 277 EDO H21 H N N 278 EDO H22 H N N 279 EDO HO2 H N N 280 GLN N N N N 281 GLN CA C N S 282 GLN C C N N 283 GLN O O N N 284 GLN CB C N N 285 GLN CG C N N 286 GLN CD C N N 287 GLN OE1 O N N 288 GLN NE2 N N N 289 GLN OXT O N N 290 GLN H H N N 291 GLN H2 H N N 292 GLN HA H N N 293 GLN HB2 H N N 294 GLN HB3 H N N 295 GLN HG2 H N N 296 GLN HG3 H N N 297 GLN HE21 H N N 298 GLN HE22 H N N 299 GLN HXT H N N 300 GLU N N N N 301 GLU CA C N S 302 GLU C C N N 303 GLU O O N N 304 GLU CB C N N 305 GLU CG C N N 306 GLU CD C N N 307 GLU OE1 O N N 308 GLU OE2 O N N 309 GLU OXT O N N 310 GLU H H N N 311 GLU H2 H N N 312 GLU HA H N N 313 GLU HB2 H N N 314 GLU HB3 H N N 315 GLU HG2 H N N 316 GLU HG3 H N N 317 GLU HE2 H N N 318 GLU HXT H N N 319 GLY N N N N 320 GLY CA C N N 321 GLY C C N N 322 GLY O O N N 323 GLY OXT O N N 324 GLY H H N N 325 GLY H2 H N N 326 GLY HA2 H N N 327 GLY HA3 H N N 328 GLY HXT H N N 329 GOL C1 C N N 330 GOL O1 O N N 331 GOL C2 C N N 332 GOL O2 O N N 333 GOL C3 C N N 334 GOL O3 O N N 335 GOL H11 H N N 336 GOL H12 H N N 337 GOL HO1 H N N 338 GOL H2 H N N 339 GOL HO2 H N N 340 GOL H31 H N N 341 GOL H32 H N N 342 GOL HO3 H N N 343 HIS N N N N 344 HIS CA C N S 345 HIS C C N N 346 HIS O O N N 347 HIS CB C N N 348 HIS CG C Y N 349 HIS ND1 N Y N 350 HIS CD2 C Y N 351 HIS CE1 C Y N 352 HIS NE2 N Y N 353 HIS OXT O N N 354 HIS H H N N 355 HIS H2 H N N 356 HIS HA H N N 357 HIS HB2 H N N 358 HIS HB3 H N N 359 HIS HD1 H N N 360 HIS HD2 H N N 361 HIS HE1 H N N 362 HIS HE2 H N N 363 HIS HXT H N N 364 HOH O O N N 365 HOH H1 H N N 366 HOH H2 H N N 367 ILE N N N N 368 ILE CA C N S 369 ILE C C N N 370 ILE O O N N 371 ILE CB C N S 372 ILE CG1 C N N 373 ILE CG2 C N N 374 ILE CD1 C N N 375 ILE OXT O N N 376 ILE H H N N 377 ILE H2 H N N 378 ILE HA H N N 379 ILE HB H N N 380 ILE HG12 H N N 381 ILE HG13 H N N 382 ILE HG21 H N N 383 ILE HG22 H N N 384 ILE HG23 H N N 385 ILE HD11 H N N 386 ILE HD12 H N N 387 ILE HD13 H N N 388 ILE HXT H N N 389 LEU N N N N 390 LEU CA C N S 391 LEU C C N N 392 LEU O O N N 393 LEU CB C N N 394 LEU CG C N N 395 LEU CD1 C N N 396 LEU CD2 C N N 397 LEU OXT O N N 398 LEU H H N N 399 LEU H2 H N N 400 LEU HA H N N 401 LEU HB2 H N N 402 LEU HB3 H N N 403 LEU HG H N N 404 LEU HD11 H N N 405 LEU HD12 H N N 406 LEU HD13 H N N 407 LEU HD21 H N N 408 LEU HD22 H N N 409 LEU HD23 H N N 410 LEU HXT H N N 411 LYS N N N N 412 LYS CA C N S 413 LYS C C N N 414 LYS O O N N 415 LYS CB C N N 416 LYS CG C N N 417 LYS CD C N N 418 LYS CE C N N 419 LYS NZ N N N 420 LYS OXT O N N 421 LYS H H N N 422 LYS H2 H N N 423 LYS HA H N N 424 LYS HB2 H N N 425 LYS HB3 H N N 426 LYS HG2 H N N 427 LYS HG3 H N N 428 LYS HD2 H N N 429 LYS HD3 H N N 430 LYS HE2 H N N 431 LYS HE3 H N N 432 LYS HZ1 H N N 433 LYS HZ2 H N N 434 LYS HZ3 H N N 435 LYS HXT H N N 436 MET N N N N 437 MET CA C N S 438 MET C C N N 439 MET O O N N 440 MET CB C N N 441 MET CG C N N 442 MET SD S N N 443 MET CE C N N 444 MET OXT O N N 445 MET H H N N 446 MET H2 H N N 447 MET HA H N N 448 MET HB2 H N N 449 MET HB3 H N N 450 MET HG2 H N N 451 MET HG3 H N N 452 MET HE1 H N N 453 MET HE2 H N N 454 MET HE3 H N N 455 MET HXT H N N 456 PHE N N N N 457 PHE CA C N S 458 PHE C C N N 459 PHE O O N N 460 PHE CB C N N 461 PHE CG C Y N 462 PHE CD1 C Y N 463 PHE CD2 C Y N 464 PHE CE1 C Y N 465 PHE CE2 C Y N 466 PHE CZ C Y N 467 PHE OXT O N N 468 PHE H H N N 469 PHE H2 H N N 470 PHE HA H N N 471 PHE HB2 H N N 472 PHE HB3 H N N 473 PHE HD1 H N N 474 PHE HD2 H N N 475 PHE HE1 H N N 476 PHE HE2 H N N 477 PHE HZ H N N 478 PHE HXT H N N 479 POP P1 P N N 480 POP O1 O N N 481 POP O2 O N N 482 POP O3 O N N 483 POP O O N N 484 POP P2 P N N 485 POP O4 O N N 486 POP O5 O N N 487 POP O6 O N N 488 POP HO2 H N N 489 POP HO5 H N N 490 PRO N N N N 491 PRO CA C N S 492 PRO C C N N 493 PRO O O N N 494 PRO CB C N N 495 PRO CG C N N 496 PRO CD C N N 497 PRO OXT O N N 498 PRO H H N N 499 PRO HA H N N 500 PRO HB2 H N N 501 PRO HB3 H N N 502 PRO HG2 H N N 503 PRO HG3 H N N 504 PRO HD2 H N N 505 PRO HD3 H N N 506 PRO HXT H N N 507 SER N N N N 508 SER CA C N S 509 SER C C N N 510 SER O O N N 511 SER CB C N N 512 SER OG O N N 513 SER OXT O N N 514 SER H H N N 515 SER H2 H N N 516 SER HA H N N 517 SER HB2 H N N 518 SER HB3 H N N 519 SER HG H N N 520 SER HXT H N N 521 THR N N N N 522 THR CA C N S 523 THR C C N N 524 THR O O N N 525 THR CB C N R 526 THR OG1 O N N 527 THR CG2 C N N 528 THR OXT O N N 529 THR H H N N 530 THR H2 H N N 531 THR HA H N N 532 THR HB H N N 533 THR HG1 H N N 534 THR HG21 H N N 535 THR HG22 H N N 536 THR HG23 H N N 537 THR HXT H N N 538 TYR N N N N 539 TYR CA C N S 540 TYR C C N N 541 TYR O O N N 542 TYR CB C N N 543 TYR CG C Y N 544 TYR CD1 C Y N 545 TYR CD2 C Y N 546 TYR CE1 C Y N 547 TYR CE2 C Y N 548 TYR CZ C Y N 549 TYR OH O N N 550 TYR OXT O N N 551 TYR H H N N 552 TYR H2 H N N 553 TYR HA H N N 554 TYR HB2 H N N 555 TYR HB3 H N N 556 TYR HD1 H N N 557 TYR HD2 H N N 558 TYR HE1 H N N 559 TYR HE2 H N N 560 TYR HH H N N 561 TYR HXT H N N 562 VAL N N N N 563 VAL CA C N S 564 VAL C C N N 565 VAL O O N N 566 VAL CB C N N 567 VAL CG1 C N N 568 VAL CG2 C N N 569 VAL OXT O N N 570 VAL H H N N 571 VAL H2 H N N 572 VAL HA H N N 573 VAL HB H N N 574 VAL HG11 H N N 575 VAL HG12 H N N 576 VAL HG13 H N N 577 VAL HG21 H N N 578 VAL HG22 H N N 579 VAL HG23 H N N 580 VAL HXT H N N 581 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BAP C1 C2 doub Y N 70 BAP C1 C1A sing Y N 71 BAP C1 H1 sing N N 72 BAP C2 C3 sing Y N 73 BAP C2 H2 sing N N 74 BAP C3 C3A doub Y N 75 BAP C3 H3 sing N N 76 BAP C3A C4 sing Y N 77 BAP C3A C3B sing Y N 78 BAP C4 C5 doub Y N 79 BAP C4 H4 sing N N 80 BAP C5 C5A sing Y N 81 BAP C5 H5 sing N N 82 BAP C5A C6 doub Y N 83 BAP C5A C5B sing Y N 84 BAP C6 C7 sing Y N 85 BAP C6 "C4'" sing N N 86 BAP C7 C8 doub Y N 87 BAP C7 "C1'" sing N N 88 BAP C8 C8A sing Y N 89 BAP C8 H8 sing N N 90 BAP C8A C9 doub Y N 91 BAP C8A C5B sing Y N 92 BAP C9 C10 sing Y N 93 BAP C9 H9 sing N N 94 BAP C10 C1A doub Y N 95 BAP C10 H10 sing N N 96 BAP C1A C3B sing Y N 97 BAP C3B C5B doub Y N 98 BAP "C1'" "O1'" sing N N 99 BAP "C1'" "C2'" sing N N 100 BAP "C1'" "H1'" sing N N 101 BAP "O1'" HO1 sing N N 102 BAP "C2'" "O2'" sing N N 103 BAP "C2'" "C3'" sing N N 104 BAP "C2'" "H2'" sing N N 105 BAP "O2'" HO2 sing N N 106 BAP "C3'" "O3'" sing N N 107 BAP "C3'" "C4'" sing N N 108 BAP "C3'" "H3'" sing N N 109 BAP "O3'" HO3 sing N N 110 BAP "C4'" "H4'1" sing N N 111 BAP "C4'" "H4'2" sing N N 112 CYS N CA sing N N 113 CYS N H sing N N 114 CYS N H2 sing N N 115 CYS CA C sing N N 116 CYS CA CB sing N N 117 CYS CA HA sing N N 118 CYS C O doub N N 119 CYS C OXT sing N N 120 CYS CB SG sing N N 121 CYS CB HB2 sing N N 122 CYS CB HB3 sing N N 123 CYS SG HG sing N N 124 CYS OXT HXT sing N N 125 DA OP3 P sing N N 126 DA OP3 HOP3 sing N N 127 DA P OP1 doub N N 128 DA P OP2 sing N N 129 DA P "O5'" sing N N 130 DA OP2 HOP2 sing N N 131 DA "O5'" "C5'" sing N N 132 DA "C5'" "C4'" sing N N 133 DA "C5'" "H5'" sing N N 134 DA "C5'" "H5''" sing N N 135 DA "C4'" "O4'" sing N N 136 DA "C4'" "C3'" sing N N 137 DA "C4'" "H4'" sing N N 138 DA "O4'" "C1'" sing N N 139 DA "C3'" "O3'" sing N N 140 DA "C3'" "C2'" sing N N 141 DA "C3'" "H3'" sing N N 142 DA "O3'" "HO3'" sing N N 143 DA "C2'" "C1'" sing N N 144 DA "C2'" "H2'" sing N N 145 DA "C2'" "H2''" sing N N 146 DA "C1'" N9 sing N N 147 DA "C1'" "H1'" sing N N 148 DA N9 C8 sing Y N 149 DA N9 C4 sing Y N 150 DA C8 N7 doub Y N 151 DA C8 H8 sing N N 152 DA N7 C5 sing Y N 153 DA C5 C6 sing Y N 154 DA C5 C4 doub Y N 155 DA C6 N6 sing N N 156 DA C6 N1 doub Y N 157 DA N6 H61 sing N N 158 DA N6 H62 sing N N 159 DA N1 C2 sing Y N 160 DA C2 N3 doub Y N 161 DA C2 H2 sing N N 162 DA N3 C4 sing Y N 163 DC OP3 P sing N N 164 DC OP3 HOP3 sing N N 165 DC P OP1 doub N N 166 DC P OP2 sing N N 167 DC P "O5'" sing N N 168 DC OP2 HOP2 sing N N 169 DC "O5'" "C5'" sing N N 170 DC "C5'" "C4'" sing N N 171 DC "C5'" "H5'" sing N N 172 DC "C5'" "H5''" sing N N 173 DC "C4'" "O4'" sing N N 174 DC "C4'" "C3'" sing N N 175 DC "C4'" "H4'" sing N N 176 DC "O4'" "C1'" sing N N 177 DC "C3'" "O3'" sing N N 178 DC "C3'" "C2'" sing N N 179 DC "C3'" "H3'" sing N N 180 DC "O3'" "HO3'" sing N N 181 DC "C2'" "C1'" sing N N 182 DC "C2'" "H2'" sing N N 183 DC "C2'" "H2''" sing N N 184 DC "C1'" N1 sing N N 185 DC "C1'" "H1'" sing N N 186 DC N1 C2 sing N N 187 DC N1 C6 sing N N 188 DC C2 O2 doub N N 189 DC C2 N3 sing N N 190 DC N3 C4 doub N N 191 DC C4 N4 sing N N 192 DC C4 C5 sing N N 193 DC N4 H41 sing N N 194 DC N4 H42 sing N N 195 DC C5 C6 doub N N 196 DC C5 H5 sing N N 197 DC C6 H6 sing N N 198 DG OP3 P sing N N 199 DG OP3 HOP3 sing N N 200 DG P OP1 doub N N 201 DG P OP2 sing N N 202 DG P "O5'" sing N N 203 DG OP2 HOP2 sing N N 204 DG "O5'" "C5'" sing N N 205 DG "C5'" "C4'" sing N N 206 DG "C5'" "H5'" sing N N 207 DG "C5'" "H5''" sing N N 208 DG "C4'" "O4'" sing N N 209 DG "C4'" "C3'" sing N N 210 DG "C4'" "H4'" sing N N 211 DG "O4'" "C1'" sing N N 212 DG "C3'" "O3'" sing N N 213 DG "C3'" "C2'" sing N N 214 DG "C3'" "H3'" sing N N 215 DG "O3'" "HO3'" sing N N 216 DG "C2'" "C1'" sing N N 217 DG "C2'" "H2'" sing N N 218 DG "C2'" "H2''" sing N N 219 DG "C1'" N9 sing N N 220 DG "C1'" "H1'" sing N N 221 DG N9 C8 sing Y N 222 DG N9 C4 sing Y N 223 DG C8 N7 doub Y N 224 DG C8 H8 sing N N 225 DG N7 C5 sing Y N 226 DG C5 C6 sing N N 227 DG C5 C4 doub Y N 228 DG C6 O6 doub N N 229 DG C6 N1 sing N N 230 DG N1 C2 sing N N 231 DG N1 H1 sing N N 232 DG C2 N2 sing N N 233 DG C2 N3 doub N N 234 DG N2 H21 sing N N 235 DG N2 H22 sing N N 236 DG N3 C4 sing N N 237 DT OP3 P sing N N 238 DT OP3 HOP3 sing N N 239 DT P OP1 doub N N 240 DT P OP2 sing N N 241 DT P "O5'" sing N N 242 DT OP2 HOP2 sing N N 243 DT "O5'" "C5'" sing N N 244 DT "C5'" "C4'" sing N N 245 DT "C5'" "H5'" sing N N 246 DT "C5'" "H5''" sing N N 247 DT "C4'" "O4'" sing N N 248 DT "C4'" "C3'" sing N N 249 DT "C4'" "H4'" sing N N 250 DT "O4'" "C1'" sing N N 251 DT "C3'" "O3'" sing N N 252 DT "C3'" "C2'" sing N N 253 DT "C3'" "H3'" sing N N 254 DT "O3'" "HO3'" sing N N 255 DT "C2'" "C1'" sing N N 256 DT "C2'" "H2'" sing N N 257 DT "C2'" "H2''" sing N N 258 DT "C1'" N1 sing N N 259 DT "C1'" "H1'" sing N N 260 DT N1 C2 sing N N 261 DT N1 C6 sing N N 262 DT C2 O2 doub N N 263 DT C2 N3 sing N N 264 DT N3 C4 sing N N 265 DT N3 H3 sing N N 266 DT C4 O4 doub N N 267 DT C4 C5 sing N N 268 DT C5 C7 sing N N 269 DT C5 C6 doub N N 270 DT C7 H71 sing N N 271 DT C7 H72 sing N N 272 DT C7 H73 sing N N 273 DT C6 H6 sing N N 274 EDO C1 O1 sing N N 275 EDO C1 C2 sing N N 276 EDO C1 H11 sing N N 277 EDO C1 H12 sing N N 278 EDO O1 HO1 sing N N 279 EDO C2 O2 sing N N 280 EDO C2 H21 sing N N 281 EDO C2 H22 sing N N 282 EDO O2 HO2 sing N N 283 GLN N CA sing N N 284 GLN N H sing N N 285 GLN N H2 sing N N 286 GLN CA C sing N N 287 GLN CA CB sing N N 288 GLN CA HA sing N N 289 GLN C O doub N N 290 GLN C OXT sing N N 291 GLN CB CG sing N N 292 GLN CB HB2 sing N N 293 GLN CB HB3 sing N N 294 GLN CG CD sing N N 295 GLN CG HG2 sing N N 296 GLN CG HG3 sing N N 297 GLN CD OE1 doub N N 298 GLN CD NE2 sing N N 299 GLN NE2 HE21 sing N N 300 GLN NE2 HE22 sing N N 301 GLN OXT HXT sing N N 302 GLU N CA sing N N 303 GLU N H sing N N 304 GLU N H2 sing N N 305 GLU CA C sing N N 306 GLU CA CB sing N N 307 GLU CA HA sing N N 308 GLU C O doub N N 309 GLU C OXT sing N N 310 GLU CB CG sing N N 311 GLU CB HB2 sing N N 312 GLU CB HB3 sing N N 313 GLU CG CD sing N N 314 GLU CG HG2 sing N N 315 GLU CG HG3 sing N N 316 GLU CD OE1 doub N N 317 GLU CD OE2 sing N N 318 GLU OE2 HE2 sing N N 319 GLU OXT HXT sing N N 320 GLY N CA sing N N 321 GLY N H sing N N 322 GLY N H2 sing N N 323 GLY CA C sing N N 324 GLY CA HA2 sing N N 325 GLY CA HA3 sing N N 326 GLY C O doub N N 327 GLY C OXT sing N N 328 GLY OXT HXT sing N N 329 GOL C1 O1 sing N N 330 GOL C1 C2 sing N N 331 GOL C1 H11 sing N N 332 GOL C1 H12 sing N N 333 GOL O1 HO1 sing N N 334 GOL C2 O2 sing N N 335 GOL C2 C3 sing N N 336 GOL C2 H2 sing N N 337 GOL O2 HO2 sing N N 338 GOL C3 O3 sing N N 339 GOL C3 H31 sing N N 340 GOL C3 H32 sing N N 341 GOL O3 HO3 sing N N 342 HIS N CA sing N N 343 HIS N H sing N N 344 HIS N H2 sing N N 345 HIS CA C sing N N 346 HIS CA CB sing N N 347 HIS CA HA sing N N 348 HIS C O doub N N 349 HIS C OXT sing N N 350 HIS CB CG sing N N 351 HIS CB HB2 sing N N 352 HIS CB HB3 sing N N 353 HIS CG ND1 sing Y N 354 HIS CG CD2 doub Y N 355 HIS ND1 CE1 doub Y N 356 HIS ND1 HD1 sing N N 357 HIS CD2 NE2 sing Y N 358 HIS CD2 HD2 sing N N 359 HIS CE1 NE2 sing Y N 360 HIS CE1 HE1 sing N N 361 HIS NE2 HE2 sing N N 362 HIS OXT HXT sing N N 363 HOH O H1 sing N N 364 HOH O H2 sing N N 365 ILE N CA sing N N 366 ILE N H sing N N 367 ILE N H2 sing N N 368 ILE CA C sing N N 369 ILE CA CB sing N N 370 ILE CA HA sing N N 371 ILE C O doub N N 372 ILE C OXT sing N N 373 ILE CB CG1 sing N N 374 ILE CB CG2 sing N N 375 ILE CB HB sing N N 376 ILE CG1 CD1 sing N N 377 ILE CG1 HG12 sing N N 378 ILE CG1 HG13 sing N N 379 ILE CG2 HG21 sing N N 380 ILE CG2 HG22 sing N N 381 ILE CG2 HG23 sing N N 382 ILE CD1 HD11 sing N N 383 ILE CD1 HD12 sing N N 384 ILE CD1 HD13 sing N N 385 ILE OXT HXT sing N N 386 LEU N CA sing N N 387 LEU N H sing N N 388 LEU N H2 sing N N 389 LEU CA C sing N N 390 LEU CA CB sing N N 391 LEU CA HA sing N N 392 LEU C O doub N N 393 LEU C OXT sing N N 394 LEU CB CG sing N N 395 LEU CB HB2 sing N N 396 LEU CB HB3 sing N N 397 LEU CG CD1 sing N N 398 LEU CG CD2 sing N N 399 LEU CG HG sing N N 400 LEU CD1 HD11 sing N N 401 LEU CD1 HD12 sing N N 402 LEU CD1 HD13 sing N N 403 LEU CD2 HD21 sing N N 404 LEU CD2 HD22 sing N N 405 LEU CD2 HD23 sing N N 406 LEU OXT HXT sing N N 407 LYS N CA sing N N 408 LYS N H sing N N 409 LYS N H2 sing N N 410 LYS CA C sing N N 411 LYS CA CB sing N N 412 LYS CA HA sing N N 413 LYS C O doub N N 414 LYS C OXT sing N N 415 LYS CB CG sing N N 416 LYS CB HB2 sing N N 417 LYS CB HB3 sing N N 418 LYS CG CD sing N N 419 LYS CG HG2 sing N N 420 LYS CG HG3 sing N N 421 LYS CD CE sing N N 422 LYS CD HD2 sing N N 423 LYS CD HD3 sing N N 424 LYS CE NZ sing N N 425 LYS CE HE2 sing N N 426 LYS CE HE3 sing N N 427 LYS NZ HZ1 sing N N 428 LYS NZ HZ2 sing N N 429 LYS NZ HZ3 sing N N 430 LYS OXT HXT sing N N 431 MET N CA sing N N 432 MET N H sing N N 433 MET N H2 sing N N 434 MET CA C sing N N 435 MET CA CB sing N N 436 MET CA HA sing N N 437 MET C O doub N N 438 MET C OXT sing N N 439 MET CB CG sing N N 440 MET CB HB2 sing N N 441 MET CB HB3 sing N N 442 MET CG SD sing N N 443 MET CG HG2 sing N N 444 MET CG HG3 sing N N 445 MET SD CE sing N N 446 MET CE HE1 sing N N 447 MET CE HE2 sing N N 448 MET CE HE3 sing N N 449 MET OXT HXT sing N N 450 PHE N CA sing N N 451 PHE N H sing N N 452 PHE N H2 sing N N 453 PHE CA C sing N N 454 PHE CA CB sing N N 455 PHE CA HA sing N N 456 PHE C O doub N N 457 PHE C OXT sing N N 458 PHE CB CG sing N N 459 PHE CB HB2 sing N N 460 PHE CB HB3 sing N N 461 PHE CG CD1 doub Y N 462 PHE CG CD2 sing Y N 463 PHE CD1 CE1 sing Y N 464 PHE CD1 HD1 sing N N 465 PHE CD2 CE2 doub Y N 466 PHE CD2 HD2 sing N N 467 PHE CE1 CZ doub Y N 468 PHE CE1 HE1 sing N N 469 PHE CE2 CZ sing Y N 470 PHE CE2 HE2 sing N N 471 PHE CZ HZ sing N N 472 PHE OXT HXT sing N N 473 POP P1 O1 doub N N 474 POP P1 O2 sing N N 475 POP P1 O3 sing N N 476 POP P1 O sing N N 477 POP O2 HO2 sing N N 478 POP O P2 sing N N 479 POP P2 O4 doub N N 480 POP P2 O5 sing N N 481 POP P2 O6 sing N N 482 POP O5 HO5 sing N N 483 PRO N CA sing N N 484 PRO N CD sing N N 485 PRO N H sing N N 486 PRO CA C sing N N 487 PRO CA CB sing N N 488 PRO CA HA sing N N 489 PRO C O doub N N 490 PRO C OXT sing N N 491 PRO CB CG sing N N 492 PRO CB HB2 sing N N 493 PRO CB HB3 sing N N 494 PRO CG CD sing N N 495 PRO CG HG2 sing N N 496 PRO CG HG3 sing N N 497 PRO CD HD2 sing N N 498 PRO CD HD3 sing N N 499 PRO OXT HXT sing N N 500 SER N CA sing N N 501 SER N H sing N N 502 SER N H2 sing N N 503 SER CA C sing N N 504 SER CA CB sing N N 505 SER CA HA sing N N 506 SER C O doub N N 507 SER C OXT sing N N 508 SER CB OG sing N N 509 SER CB HB2 sing N N 510 SER CB HB3 sing N N 511 SER OG HG sing N N 512 SER OXT HXT sing N N 513 THR N CA sing N N 514 THR N H sing N N 515 THR N H2 sing N N 516 THR CA C sing N N 517 THR CA CB sing N N 518 THR CA HA sing N N 519 THR C O doub N N 520 THR C OXT sing N N 521 THR CB OG1 sing N N 522 THR CB CG2 sing N N 523 THR CB HB sing N N 524 THR OG1 HG1 sing N N 525 THR CG2 HG21 sing N N 526 THR CG2 HG22 sing N N 527 THR CG2 HG23 sing N N 528 THR OXT HXT sing N N 529 TYR N CA sing N N 530 TYR N H sing N N 531 TYR N H2 sing N N 532 TYR CA C sing N N 533 TYR CA CB sing N N 534 TYR CA HA sing N N 535 TYR C O doub N N 536 TYR C OXT sing N N 537 TYR CB CG sing N N 538 TYR CB HB2 sing N N 539 TYR CB HB3 sing N N 540 TYR CG CD1 doub Y N 541 TYR CG CD2 sing Y N 542 TYR CD1 CE1 sing Y N 543 TYR CD1 HD1 sing N N 544 TYR CD2 CE2 doub Y N 545 TYR CD2 HD2 sing N N 546 TYR CE1 CZ doub Y N 547 TYR CE1 HE1 sing N N 548 TYR CE2 CZ sing Y N 549 TYR CE2 HE2 sing N N 550 TYR CZ OH sing N N 551 TYR OH HH sing N N 552 TYR OXT HXT sing N N 553 VAL N CA sing N N 554 VAL N H sing N N 555 VAL N H2 sing N N 556 VAL CA C sing N N 557 VAL CA CB sing N N 558 VAL CA HA sing N N 559 VAL C O doub N N 560 VAL C OXT sing N N 561 VAL CB CG1 sing N N 562 VAL CB CG2 sing N N 563 VAL CB HB sing N N 564 VAL CG1 HG11 sing N N 565 VAL CG1 HG12 sing N N 566 VAL CG1 HG13 sing N N 567 VAL CG2 HG21 sing N N 568 VAL CG2 HG22 sing N N 569 VAL CG2 HG23 sing N N 570 VAL OXT HXT sing N N 571 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2IBK 'double helix' 2IBK 'b-form double helix' 2IBK 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 17 1_555 -0.072 -0.300 -0.236 -1.981 -6.773 -1.255 1 D_DG1:DC118_E D 1 ? E 118 ? 19 1 1 A DG 2 1_555 B DC 16 1_555 -0.412 -0.183 0.012 4.800 -3.923 2.872 2 D_DG2:DC117_E D 2 ? E 117 ? 19 1 1 A DG 3 1_555 B DC 15 1_555 0.086 -0.263 0.178 5.297 -7.734 -3.421 3 D_DG3:DC116_E D 3 ? E 116 ? 19 1 1 A DG 4 1_555 B DC 14 1_555 0.028 -0.168 -0.163 -4.268 -11.830 1.884 4 D_DG4:DC115_E D 4 ? E 115 ? 19 1 1 A DG 5 1_555 B DC 13 1_555 0.308 -0.181 -0.080 2.091 -12.831 -0.342 5 D_DG5:DC114_E D 5 ? E 114 ? 19 1 1 A DA 6 1_555 B DT 12 1_555 -0.108 -0.133 -0.229 -4.115 -16.027 -2.739 6 D_DA6:DT113_E D 6 ? E 113 ? 20 1 1 A DA 7 1_555 B DT 11 1_555 -0.058 -0.060 0.074 -3.822 -24.150 1.654 7 D_DA7:DT112_E D 7 ? E 112 ? 20 1 1 A DG 8 1_555 B DC 10 1_555 -0.648 -0.475 -0.108 3.294 2.709 -4.998 8 D_DG8:DC111_E D 8 ? E 111 ? 19 1 1 A DG 9 1_555 B DC 9 1_555 -0.201 -0.227 0.046 6.024 -14.718 0.525 9 D_DG9:DC110_E D 9 ? E 110 ? 19 1 1 A DA 10 1_555 B DT 8 1_555 0.068 -0.080 -0.207 -16.251 -20.680 2.581 10 D_DA10:DT109_E D 10 ? E 109 ? 20 1 1 A DT 11 1_555 B DA 7 1_555 -0.228 -0.023 0.210 -15.807 -13.377 -3.347 11 D_DT11:DA108_E D 11 ? E 108 ? 20 1 1 A DT 12 1_555 B DA 6 1_555 -0.369 0.027 0.204 -10.741 -19.162 -4.327 12 D_DT12:DA107_E D 12 ? E 107 ? 20 1 1 A DA 13 1_555 B DT 4 1_555 0.133 -3.221 -0.837 16.879 7.125 62.695 13 D_DA13:DT105_E D 13 ? E 105 ? 23 3 1 A DT 14 1_555 B DA 3 1_555 -0.744 3.443 0.766 -15.661 2.409 -73.521 14 D_DT14:DA104_E D 14 ? E 104 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 17 1_555 A DG 2 1_555 B DC 16 1_555 0.875 0.337 3.244 -1.923 3.875 28.647 -0.174 -2.171 3.196 7.776 3.858 28.965 1 DD_DG1DG2:DC117DC118_EE D 1 ? E 118 ? D 2 ? E 117 ? 1 A DG 2 1_555 B DC 16 1_555 A DG 3 1_555 B DC 15 1_555 -1.644 0.249 3.263 -4.449 3.928 37.938 -0.127 1.929 3.435 5.997 6.793 38.382 2 DD_DG2DG3:DC116DC117_EE D 2 ? E 117 ? D 3 ? E 116 ? 1 A DG 3 1_555 B DC 15 1_555 A DG 4 1_555 B DC 14 1_555 0.929 -0.270 3.526 3.618 6.787 31.395 -1.792 -0.974 3.476 12.312 -6.563 32.301 3 DD_DG3DG4:DC115DC116_EE D 3 ? E 116 ? D 4 ? E 115 ? 1 A DG 4 1_555 B DC 14 1_555 A DG 5 1_555 B DC 13 1_555 0.409 -0.177 3.224 1.112 9.109 28.012 -2.259 -0.571 3.032 18.211 -2.223 29.448 4 DD_DG4DG5:DC114DC115_EE D 4 ? E 115 ? D 5 ? E 114 ? 1 A DG 5 1_555 B DC 13 1_555 A DA 6 1_555 B DT 12 1_555 -0.674 -0.079 3.387 -3.609 4.103 37.148 -0.682 0.555 3.407 6.398 5.627 37.534 5 DD_DG5DA6:DT113DC114_EE D 5 ? E 114 ? D 6 ? E 113 ? 1 A DA 6 1_555 B DT 12 1_555 A DA 7 1_555 B DT 11 1_555 -0.125 -0.249 3.294 -2.211 1.803 35.414 -0.674 -0.119 3.279 2.958 3.627 35.525 6 DD_DA6DA7:DT112DT113_EE D 6 ? E 113 ? D 7 ? E 112 ? 1 A DA 7 1_555 B DT 11 1_555 A DG 8 1_555 B DC 10 1_555 0.498 0.246 3.206 0.808 -2.171 29.495 0.933 -0.809 3.193 -4.256 -1.584 29.584 7 DD_DA7DG8:DC111DT112_EE D 7 ? E 112 ? D 8 ? E 111 ? 1 A DG 8 1_555 B DC 10 1_555 A DG 9 1_555 B DC 9 1_555 -0.797 0.341 3.355 -3.503 -0.381 34.942 0.624 0.778 3.412 -0.632 5.815 35.114 8 DD_DG8DG9:DC110DC111_EE D 8 ? E 111 ? D 9 ? E 110 ? 1 A DG 9 1_555 B DC 9 1_555 A DA 10 1_555 B DT 8 1_555 -0.287 -0.293 3.775 1.499 -4.177 43.304 0.071 0.554 3.774 -5.642 -2.025 43.520 9 DD_DG9DA10:DT109DC110_EE D 9 ? E 110 ? D 10 ? E 109 ? 1 A DA 10 1_555 B DT 8 1_555 A DT 11 1_555 B DA 7 1_555 -0.473 -0.616 3.195 -3.900 0.163 31.286 -1.164 0.156 3.225 0.301 7.196 31.523 10 DD_DA10DT11:DA108DT109_EE D 10 ? E 109 ? D 11 ? E 108 ? 1 A DT 11 1_555 B DA 7 1_555 A DT 12 1_555 B DA 6 1_555 -0.442 -0.217 3.143 -2.265 -1.361 32.232 -0.157 0.406 3.172 -2.447 4.071 32.337 11 DD_DT11DT12:DA107DA108_EE D 11 ? E 108 ? D 12 ? E 107 ? 1 A DT 12 1_555 B DA 6 1_555 A DA 13 1_555 B DT 4 1_555 -1.906 3.825 -1.720 168.172 -37.349 -101.144 -1.966 -1.189 0.376 18.865 84.943 -175.092 12 DD_DT12DA13:DT105DA107_EE D 12 ? E 107 ? D 13 ? E 105 ? 1 A DA 13 1_555 B DT 4 1_555 A DT 14 1_555 B DA 3 1_555 0.670 4.990 1.283 -87.679 153.694 -133.440 -2.574 0.290 -0.403 -76.955 -43.901 -178.793 13 DD_DA13DT14:DA104DT105_EE D 13 ? E 105 ? D 14 ? E 104 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' BAP 5 1,2-ETHANEDIOL EDO 6 GLYCEROL GOL 7 'CALCIUM ION' CA 8 'PYROPHOSPHATE 2-' POP 9 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1JX4 _pdbx_initial_refinement_model.details 'PDB Entry 1JX4' #