HEADER TRANSFERASE 13-SEP-06 2ICX TITLE CRYSTAL STRUCTURE OF A PUTATIVE UDP-GLUCOSE PYROPHOSPHORYLASE FROM TITLE 2 ARABIDOPSIS THALIANA WITH BOUND UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-GLUCOSE PYROPHOSPHORYLASE 2, UDPGP 2, UGPASE 2; COMPND 5 EC: 2.7.7.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G03250, T17B22.6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP-17 KEYWDS AT3G03250, UTP, PUTATIVE UDP-GLUCOSE PYROPHOSPHORYLASE, STRUCTURAL KEYWDS 2 GENOMICS FUNCTIONAL FOLLOW-UP STUDY, STRUCTURAL GENOMICS, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI, CESG, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 4 GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 30-AUG-23 2ICX 1 REMARK SEQADV REVDAT 4 24-FEB-09 2ICX 1 VERSN REVDAT 3 20-FEB-07 2ICX 1 JRNL REVDAT 2 03-OCT-06 2ICX 1 REMARK REVDAT 1 26-SEP-06 2ICX 0 JRNL AUTH J.G.MCCOY,E.BITTO,C.A.BINGMAN,G.E.WESENBERG,R.M.BANNEN, JRNL AUTH 2 D.A.KONDRASHOV,G.N.PHILLIPS JR. JRNL TITL STRUCTURE AND DYNAMICS OF UDP-GLUCOSE PYROPHOSPHORYLASE FROM JRNL TITL 2 ARABIDOPSIS THALIANA WITH BOUND UDP-GLUCOSE AND UTP. JRNL REF J.MOL.BIOL. V. 366 830 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17178129 JRNL DOI 10.1016/J.JMB.2006.11.059 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 83222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.996 REMARK 3 FREE R VALUE TEST SET COUNT : 4158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5852 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 316 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 871 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36300 REMARK 3 B22 (A**2) : -0.39800 REMARK 3 B33 (A**2) : 0.67600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.927 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7333 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9961 ; 1.902 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 918 ; 5.963 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;35.005 ;25.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1323 ;14.536 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.597 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1165 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5364 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3487 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5020 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 764 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4705 ; 0.868 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7453 ; 1.298 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2952 ; 2.253 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2503 ; 3.454 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ICX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRADED MULTILAYER REMARK 200 OPTICS : MONTEL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PROTEUM-R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT, SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 70.481 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.03530 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.09 REMARK 200 R MERGE FOR SHELL (I) : 0.31150 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1Z90 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (10 MG/ML PROTEIN, REMARK 280 0.050 M SODIUM CHLORIDE, 0.0003 M TCEP, 0.005 M TRIS PH 8.0) REMARK 280 MIXED IN A 1:1 RATIO WITH WELL SOLUTION ( 28 % PEG 2K, 5% DMSO, REMARK 280 0.10 M MES/ACETATE PH 5.5), CRYSTALS SOAKED IN WELL SOLUTION REMARK 280 SUPPLEMENTED WITH 0.002 M UTP, VAPOR DIFFUSION, HANGING DROP REMARK 280 WITH MICRO-SEEDING, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 93.84150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.83950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 93.84150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.83950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 GLU A 40 REMARK 465 ALA A 41 REMARK 465 GLN A 42 REMARK 465 HIS A 43 REMARK 465 ILE A 44 REMARK 465 VAL A 255 REMARK 465 LYS A 256 REMARK 465 SER B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 GLU B 40 REMARK 465 ALA B 41 REMARK 465 LEU B 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 411 O HOH B 1313 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 98 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 -73.87 -105.55 REMARK 500 LYS A 314 62.87 -117.12 REMARK 500 ASN A 320 65.27 38.86 REMARK 500 THR B 151 2.14 -69.98 REMARK 500 LYS B 184 -38.08 -38.34 REMARK 500 PRO B 190 49.82 -80.68 REMARK 500 LYS B 314 62.51 -111.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z90 RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT SUBSTRATE REMARK 900 RELATED ID: 2ICY RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND UDP-GLUCOSE REMARK 900 RELATED ID: GO.14914 RELATED DB: TARGETDB DBREF 2ICX A 2 469 UNP Q9M9P3 UGPA2_ARATH 2 469 DBREF 2ICX B 2 469 UNP Q9M9P3 UGPA2_ARATH 2 469 SEQADV 2ICX SER A 1 UNP Q9M9P3 CLONING ARTIFACT SEQADV 2ICX SER B 1 UNP Q9M9P3 CLONING ARTIFACT SEQRES 1 A 469 SER ALA ALA THR THR GLU ASN LEU PRO GLN LEU LYS SER SEQRES 2 A 469 ALA VAL ASP GLY LEU THR GLU MET SER GLU SER GLU LYS SEQRES 3 A 469 SER GLY PHE ILE SER LEU VAL SER ARG TYR LEU SER GLY SEQRES 4 A 469 GLU ALA GLN HIS ILE GLU TRP SER LYS ILE GLN THR PRO SEQRES 5 A 469 THR ASP GLU ILE VAL VAL PRO TYR GLU LYS MET THR PRO SEQRES 6 A 469 VAL SER GLN ASP VAL ALA GLU THR LYS ASN LEU LEU ASP SEQRES 7 A 469 LYS LEU VAL VAL LEU LYS LEU ASN GLY GLY LEU GLY THR SEQRES 8 A 469 THR MET GLY CYS THR GLY PRO LYS SER VAL ILE GLU VAL SEQRES 9 A 469 ARG ASP GLY LEU THR PHE LEU ASP LEU ILE VAL ILE GLN SEQRES 10 A 469 ILE GLU ASN LEU ASN ASN LYS TYR GLY CYS LYS VAL PRO SEQRES 11 A 469 LEU VAL LEU MET ASN SER PHE ASN THR HIS ASP ASP THR SEQRES 12 A 469 HIS LYS ILE VAL GLU LYS TYR THR ASN SER ASN VAL ASP SEQRES 13 A 469 ILE HIS THR PHE ASN GLN SER LYS TYR PRO ARG VAL VAL SEQRES 14 A 469 ALA ASP GLU PHE VAL PRO TRP PRO SER LYS GLY LYS THR SEQRES 15 A 469 ASP LYS GLU GLY TRP TYR PRO PRO GLY HIS GLY ASP VAL SEQRES 16 A 469 PHE PRO ALA LEU MET ASN SER GLY LYS LEU ASP THR PHE SEQRES 17 A 469 LEU SER GLN GLY LYS GLU TYR VAL PHE VAL ALA ASN SER SEQRES 18 A 469 ASP ASN LEU GLY ALA ILE VAL ASP LEU THR ILE LEU LYS SEQRES 19 A 469 HIS LEU ILE GLN ASN LYS ASN GLU TYR CYS MET GLU VAL SEQRES 20 A 469 THR PRO LYS THR LEU ALA ASP VAL LYS GLY GLY THR LEU SEQRES 21 A 469 ILE SER TYR GLU GLY LYS VAL GLN LEU LEU GLU ILE ALA SEQRES 22 A 469 GLN VAL PRO ASP GLU HIS VAL ASN GLU PHE LYS SER ILE SEQRES 23 A 469 GLU LYS PHE LYS ILE PHE ASN THR ASN ASN LEU TRP VAL SEQRES 24 A 469 ASN LEU LYS ALA ILE LYS LYS LEU VAL GLU ALA ASP ALA SEQRES 25 A 469 LEU LYS MET GLU ILE ILE PRO ASN PRO LYS GLU VAL ASP SEQRES 26 A 469 GLY VAL LYS VAL LEU GLN LEU GLU THR ALA ALA GLY ALA SEQRES 27 A 469 ALA ILE ARG PHE PHE ASP ASN ALA ILE GLY VAL ASN VAL SEQRES 28 A 469 PRO ARG SER ARG PHE LEU PRO VAL LYS ALA SER SER ASP SEQRES 29 A 469 LEU LEU LEU VAL GLN SER ASP LEU TYR THR LEU VAL ASP SEQRES 30 A 469 GLY PHE VAL THR ARG ASN LYS ALA ARG THR ASN PRO SER SEQRES 31 A 469 ASN PRO SER ILE GLU LEU GLY PRO GLU PHE LYS LYS VAL SEQRES 32 A 469 ALA THR PHE LEU SER ARG PHE LYS SER ILE PRO SER ILE SEQRES 33 A 469 VAL GLU LEU ASP SER LEU LYS VAL SER GLY ASP VAL TRP SEQRES 34 A 469 PHE GLY SER SER ILE VAL LEU LYS GLY LYS VAL THR VAL SEQRES 35 A 469 ALA ALA LYS SER GLY VAL LYS LEU GLU ILE PRO ASP ARG SEQRES 36 A 469 ALA VAL VAL GLU ASN LYS ASN ILE ASN GLY PRO GLU ASP SEQRES 37 A 469 LEU SEQRES 1 B 469 SER ALA ALA THR THR GLU ASN LEU PRO GLN LEU LYS SER SEQRES 2 B 469 ALA VAL ASP GLY LEU THR GLU MET SER GLU SER GLU LYS SEQRES 3 B 469 SER GLY PHE ILE SER LEU VAL SER ARG TYR LEU SER GLY SEQRES 4 B 469 GLU ALA GLN HIS ILE GLU TRP SER LYS ILE GLN THR PRO SEQRES 5 B 469 THR ASP GLU ILE VAL VAL PRO TYR GLU LYS MET THR PRO SEQRES 6 B 469 VAL SER GLN ASP VAL ALA GLU THR LYS ASN LEU LEU ASP SEQRES 7 B 469 LYS LEU VAL VAL LEU LYS LEU ASN GLY GLY LEU GLY THR SEQRES 8 B 469 THR MET GLY CYS THR GLY PRO LYS SER VAL ILE GLU VAL SEQRES 9 B 469 ARG ASP GLY LEU THR PHE LEU ASP LEU ILE VAL ILE GLN SEQRES 10 B 469 ILE GLU ASN LEU ASN ASN LYS TYR GLY CYS LYS VAL PRO SEQRES 11 B 469 LEU VAL LEU MET ASN SER PHE ASN THR HIS ASP ASP THR SEQRES 12 B 469 HIS LYS ILE VAL GLU LYS TYR THR ASN SER ASN VAL ASP SEQRES 13 B 469 ILE HIS THR PHE ASN GLN SER LYS TYR PRO ARG VAL VAL SEQRES 14 B 469 ALA ASP GLU PHE VAL PRO TRP PRO SER LYS GLY LYS THR SEQRES 15 B 469 ASP LYS GLU GLY TRP TYR PRO PRO GLY HIS GLY ASP VAL SEQRES 16 B 469 PHE PRO ALA LEU MET ASN SER GLY LYS LEU ASP THR PHE SEQRES 17 B 469 LEU SER GLN GLY LYS GLU TYR VAL PHE VAL ALA ASN SER SEQRES 18 B 469 ASP ASN LEU GLY ALA ILE VAL ASP LEU THR ILE LEU LYS SEQRES 19 B 469 HIS LEU ILE GLN ASN LYS ASN GLU TYR CYS MET GLU VAL SEQRES 20 B 469 THR PRO LYS THR LEU ALA ASP VAL LYS GLY GLY THR LEU SEQRES 21 B 469 ILE SER TYR GLU GLY LYS VAL GLN LEU LEU GLU ILE ALA SEQRES 22 B 469 GLN VAL PRO ASP GLU HIS VAL ASN GLU PHE LYS SER ILE SEQRES 23 B 469 GLU LYS PHE LYS ILE PHE ASN THR ASN ASN LEU TRP VAL SEQRES 24 B 469 ASN LEU LYS ALA ILE LYS LYS LEU VAL GLU ALA ASP ALA SEQRES 25 B 469 LEU LYS MET GLU ILE ILE PRO ASN PRO LYS GLU VAL ASP SEQRES 26 B 469 GLY VAL LYS VAL LEU GLN LEU GLU THR ALA ALA GLY ALA SEQRES 27 B 469 ALA ILE ARG PHE PHE ASP ASN ALA ILE GLY VAL ASN VAL SEQRES 28 B 469 PRO ARG SER ARG PHE LEU PRO VAL LYS ALA SER SER ASP SEQRES 29 B 469 LEU LEU LEU VAL GLN SER ASP LEU TYR THR LEU VAL ASP SEQRES 30 B 469 GLY PHE VAL THR ARG ASN LYS ALA ARG THR ASN PRO SER SEQRES 31 B 469 ASN PRO SER ILE GLU LEU GLY PRO GLU PHE LYS LYS VAL SEQRES 32 B 469 ALA THR PHE LEU SER ARG PHE LYS SER ILE PRO SER ILE SEQRES 33 B 469 VAL GLU LEU ASP SER LEU LYS VAL SER GLY ASP VAL TRP SEQRES 34 B 469 PHE GLY SER SER ILE VAL LEU LYS GLY LYS VAL THR VAL SEQRES 35 B 469 ALA ALA LYS SER GLY VAL LYS LEU GLU ILE PRO ASP ARG SEQRES 36 B 469 ALA VAL VAL GLU ASN LYS ASN ILE ASN GLY PRO GLU ASP SEQRES 37 B 469 LEU HET DMS A 900 4 HET UTP A 901 29 HET UTP B 902 29 HETNAM DMS DIMETHYL SULFOXIDE HETNAM UTP URIDINE 5'-TRIPHOSPHATE FORMUL 3 DMS C2 H6 O S FORMUL 4 UTP 2(C9 H15 N2 O15 P3) FORMUL 6 HOH *871(H2 O) HELIX 1 1 LEU A 8 GLY A 17 1 10 HELIX 2 2 SER A 22 GLY A 39 1 18 HELIX 3 3 GLU A 45 ILE A 49 5 5 HELIX 4 4 GLU A 61 MET A 63 5 3 HELIX 5 5 ASP A 69 ASP A 78 1 10 HELIX 6 6 PRO A 98 VAL A 101 5 4 HELIX 7 7 PHE A 110 GLY A 126 1 17 HELIX 8 8 THR A 139 GLU A 148 1 10 HELIX 9 9 LYS A 149 THR A 151 5 3 HELIX 10 10 PRO A 177 GLY A 180 5 4 HELIX 11 11 ASP A 183 GLU A 185 5 3 HELIX 12 12 GLY A 191 GLY A 193 5 3 HELIX 13 13 ASP A 194 SER A 202 1 9 HELIX 14 14 GLY A 203 GLN A 211 1 9 HELIX 15 15 ASP A 229 LYS A 240 1 12 HELIX 16 16 GLU A 271 VAL A 275 5 5 HELIX 17 17 PRO A 276 GLU A 278 5 3 HELIX 18 18 HIS A 279 LYS A 284 1 6 HELIX 19 19 LEU A 301 ALA A 310 1 10 HELIX 20 20 ALA A 335 PHE A 343 5 9 HELIX 21 21 PRO A 352 PHE A 356 5 5 HELIX 22 22 ALA A 361 SER A 370 1 10 HELIX 23 23 PRO A 398 LYS A 401 5 4 HELIX 24 24 LYS A 402 ARG A 409 1 8 HELIX 25 25 GLY A 465 LEU A 469 5 5 HELIX 26 26 LEU B 8 GLY B 17 1 10 HELIX 27 27 SER B 22 GLY B 39 1 18 HELIX 28 28 GLU B 45 ILE B 49 5 5 HELIX 29 29 GLU B 61 MET B 63 5 3 HELIX 30 30 ASP B 69 ASP B 78 1 10 HELIX 31 31 GLY B 90 GLY B 94 5 5 HELIX 32 32 PRO B 98 VAL B 101 5 4 HELIX 33 33 PHE B 110 GLY B 126 1 17 HELIX 34 34 THR B 139 GLU B 148 1 10 HELIX 35 35 LYS B 149 THR B 151 5 3 HELIX 36 36 PRO B 177 GLY B 180 5 4 HELIX 37 37 ASP B 183 GLU B 185 5 3 HELIX 38 38 GLY B 191 GLY B 193 5 3 HELIX 39 39 ASP B 194 SER B 202 1 9 HELIX 40 40 GLY B 203 GLN B 211 1 9 HELIX 41 41 ASP B 229 LYS B 240 1 12 HELIX 42 42 GLU B 271 VAL B 275 5 5 HELIX 43 43 PRO B 276 GLU B 278 5 3 HELIX 44 44 HIS B 279 LYS B 284 1 6 HELIX 45 45 LEU B 301 ALA B 310 1 10 HELIX 46 46 ALA B 335 PHE B 343 5 9 HELIX 47 47 PRO B 352 PHE B 356 5 5 HELIX 48 48 ALA B 361 SER B 370 1 10 HELIX 49 49 PRO B 398 LYS B 401 5 4 HELIX 50 50 LYS B 402 PHE B 410 1 9 HELIX 51 51 GLY B 465 LEU B 469 5 5 SHEET 1 A 8 VAL A 57 PRO A 59 0 SHEET 2 A 8 ILE A 347 ASN A 350 1 O GLY A 348 N VAL A 58 SHEET 3 A 8 TYR A 243 PRO A 249 1 N VAL A 247 O VAL A 349 SHEET 4 A 8 ILE A 291 ASN A 300 -1 O ASN A 296 N GLU A 246 SHEET 5 A 8 TYR A 215 ASN A 220 -1 N VAL A 218 O LEU A 297 SHEET 6 A 8 LEU A 80 ASN A 86 1 N LEU A 83 O PHE A 217 SHEET 7 A 8 LEU A 131 ASN A 135 1 O MET A 134 N LYS A 84 SHEET 8 A 8 ILE A 157 ASN A 161 1 O PHE A 160 N ASN A 135 SHEET 1 B 2 GLU A 103 ARG A 105 0 SHEET 2 B 2 LEU A 108 THR A 109 -1 O LEU A 108 N VAL A 104 SHEET 1 C 2 TYR A 165 PRO A 166 0 SHEET 2 C 2 TRP A 187 TYR A 188 -1 O TYR A 188 N TYR A 165 SHEET 1 D 4 VAL A 174 PRO A 175 0 SHEET 2 D 4 VAL A 168 VAL A 169 -1 N VAL A 169 O VAL A 174 SHEET 3 D 4 VAL A 327 LEU A 330 -1 O LEU A 330 N VAL A 168 SHEET 4 D 4 LYS A 322 VAL A 324 -1 N LYS A 322 O VAL A 329 SHEET 1 E 2 THR A 259 TYR A 263 0 SHEET 2 E 2 LYS A 266 LEU A 270 -1 O LYS A 266 N TYR A 263 SHEET 1 F 2 TYR A 373 VAL A 376 0 SHEET 2 F 2 PHE A 379 ARG A 382 -1 O THR A 381 N THR A 374 SHEET 1 G 4 SER A 393 LEU A 396 0 SHEET 2 G 4 LEU A 419 SER A 425 1 O VAL A 424 N GLU A 395 SHEET 3 G 4 VAL A 435 ALA A 443 1 O VAL A 440 N SER A 421 SHEET 4 G 4 VAL A 457 ILE A 463 1 O ILE A 463 N ALA A 443 SHEET 1 H 2 ASP A 427 PHE A 430 0 SHEET 2 H 2 LYS A 449 ILE A 452 1 O ILE A 452 N TRP A 429 SHEET 1 I 8 VAL B 57 PRO B 59 0 SHEET 2 I 8 ILE B 347 ASN B 350 1 O GLY B 348 N VAL B 58 SHEET 3 I 8 TYR B 243 PRO B 249 1 N VAL B 247 O VAL B 349 SHEET 4 I 8 ILE B 291 ASN B 300 -1 O ASN B 296 N GLU B 246 SHEET 5 I 8 TYR B 215 ASN B 220 -1 N VAL B 218 O LEU B 297 SHEET 6 I 8 LEU B 80 LEU B 85 1 N LEU B 85 O ALA B 219 SHEET 7 I 8 LEU B 131 ASN B 135 1 O VAL B 132 N VAL B 82 SHEET 8 I 8 ILE B 157 ASN B 161 1 O HIS B 158 N LEU B 131 SHEET 1 J 2 GLU B 103 ARG B 105 0 SHEET 2 J 2 LEU B 108 THR B 109 -1 O LEU B 108 N VAL B 104 SHEET 1 K 2 TYR B 165 PRO B 166 0 SHEET 2 K 2 TRP B 187 TYR B 188 -1 O TYR B 188 N TYR B 165 SHEET 1 L 4 VAL B 174 PRO B 175 0 SHEET 2 L 4 VAL B 168 VAL B 169 -1 N VAL B 169 O VAL B 174 SHEET 3 L 4 VAL B 327 LEU B 330 -1 O LEU B 330 N VAL B 168 SHEET 4 L 4 LYS B 322 VAL B 324 -1 N VAL B 324 O VAL B 327 SHEET 1 M 2 THR B 259 TYR B 263 0 SHEET 2 M 2 LYS B 266 LEU B 270 -1 O LEU B 270 N THR B 259 SHEET 1 N 2 TYR B 373 VAL B 376 0 SHEET 2 N 2 PHE B 379 ARG B 382 -1 O THR B 381 N THR B 374 SHEET 1 O 4 SER B 393 LEU B 396 0 SHEET 2 O 4 LEU B 419 SER B 425 1 O VAL B 424 N GLU B 395 SHEET 3 O 4 VAL B 435 ALA B 443 1 O VAL B 440 N SER B 421 SHEET 4 O 4 VAL B 457 ILE B 463 1 O VAL B 458 N VAL B 435 SHEET 1 P 2 ASP B 427 PHE B 430 0 SHEET 2 P 2 LYS B 449 ILE B 452 1 O LEU B 450 N TRP B 429 SITE 1 AC1 8 ARG A 353 SER A 354 PHE A 356 ARG A 382 SITE 2 AC1 8 PRO A 389 ASN A 391 HOH A 962 HOH A1111 SITE 1 AC2 18 LEU A 85 ASN A 86 GLY A 87 GLY A 88 SITE 2 AC2 18 THR A 92 LYS A 99 GLN A 162 PRO A 189 SITE 3 AC2 18 GLY A 191 HIS A 192 ASN A 220 SER A 221 SITE 4 AC2 18 ASP A 222 LYS A 360 HOH A1015 HOH A1030 SITE 5 AC2 18 HOH A1323 HOH A1325 SITE 1 AC3 19 LEU B 85 ASN B 86 GLY B 87 GLY B 88 SITE 2 AC3 19 THR B 92 LYS B 99 MET B 134 GLN B 162 SITE 3 AC3 19 PRO B 189 GLY B 191 HIS B 192 ASN B 220 SITE 4 AC3 19 SER B 221 ASP B 222 LYS B 360 HOH B1024 SITE 5 AC3 19 HOH B1111 HOH B1135 HOH B1220 CRYST1 187.683 59.679 89.813 90.00 100.38 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005328 0.000000 0.000976 0.00000 SCALE2 0.000000 0.016756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011320 0.00000