data_2IE1 # _entry.id 2IE1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2IE1 pdb_00002ie1 10.2210/pdb2ie1/pdb NDB ZD0022 ? ? RCSB RCSB039466 ? ? WWPDB D_1000039466 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1dj6 'Deoxy nucleic acid and polyamine complex' unspecified PDB 292d 'Deoxy nucleic acid and polyamine complex' unspecified PDB 293d 'Deoxy nucleic acid and polyamine complex' unspecified PDB 336d 'Deoxy nucleic acid and polyamine complex' unspecified PDB 2HYH 'Deoxy nucleic acid and polyamine complex' unspecified PDB 2DY6 'Deoxy nucleic acid and polyamine complex' unspecified PDB 1pe6 'Hydrolase (sulfhydryl Proteinase)' unspecified PDB 1pip 'Hydrolase(thiol Protease)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IE1 _pdbx_database_status.recvd_initial_deposition_date 2006-09-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohishi, H.' 1 'Odoko, M.' 2 'Tsukamoto, K.' 3 'Hiyama, Y.' 4 'Maezaki, N.' 5 'Grzeskowiak, K.' 6 'Ishida, T.' 7 'Tanaka, T.' 8 'Okabe, N.' 9 'Fukuyama, K.' 10 # _citation.id primary _citation.title 'Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohishi, H.' 1 ? primary 'Odoko, M.' 2 ? primary 'Tsukamoto, K.' 3 ? primary 'Hiyama, Y.' 4 ? primary 'Maezaki, N.' 5 ? primary 'Grzeskowiak, K.' 6 ? primary 'Ishida, T.' 7 ? primary 'Tanaka, T.' 8 ? primary 'Okabe, N.' 9 ? primary 'Fukuyama, K.' 10 ? # _cell.entry_id 2IE1 _cell.length_a 17.64 _cell.length_b 30.38 _cell.length_c 43.63 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2IE1 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3') ; 1810.205 2 ? ? ? ? 2 non-polymer syn "N-(2-AMINOETHYL)-N'-{2-[(2-AMINOETHYL)AMINO]ETHYL}ETHANE-1,2-DIAMINE" 189.302 2 ? ? ? ? 3 water nat water 18.015 55 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2IE1 _struct_ref.pdbx_db_accession 2IE1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IE1 A 1 ? 6 ? 2IE1 1 ? 6 ? 1 6 2 1 2IE1 B 1 ? 6 ? 2IE1 7 ? 12 ? 7 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 PAW non-polymer . "N-(2-AMINOETHYL)-N'-{2-[(2-AMINOETHYL)AMINO]ETHYL}ETHANE-1,2-DIAMINE" 'N1-{2-[2-(2-AMINO-ETHYLAMINO)-ETHYLAMINO]-ETHYL}-ETHANE-1,2-DIAMINE' 'C8 H23 N5' 189.302 # _exptl.entry_id 2IE1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.533237 _exptl_crystal.density_percent_sol 23.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-06-28 _diffrn_detector.details monochro # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Ni _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-6A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2IE1 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 4.0 _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 20.0 _reflns.number_all 3346 _reflns.number_obs 3249 _reflns.percent_possible_obs 97.1 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value 0.047 _reflns.pdbx_netI_over_sigmaI 6400 _reflns.B_iso_Wilson_estimate 8.8 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 97.1 _reflns_shell.Rmerge_I_obs 0.055 _reflns_shell.pdbx_Rsym_value 0.047 _reflns_shell.meanI_over_sigI_obs 6400 _reflns_shell.pdbx_redundancy 4.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3346 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2IE1 _refine.ls_d_res_high 1.6 _refine.ls_d_res_low 20 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_ls_sigma_I 4.0 _refine.ls_number_reflns_all 3346 _refine.ls_number_reflns_obs 3249 _refine.ls_number_reflns_R_free 320 _refine.ls_percent_reflns_obs 97.1 _refine.ls_R_factor_all 0.204 _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_R_work 0.19 _refine.ls_R_factor_R_free 0.205 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model '1dj6 in PDB' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.B_iso_mean 8.8 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 274 _refine_hist.pdbx_number_atoms_ligand 82 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 521 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 20 # _struct.entry_id 2IE1 _struct.title 'Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IE1 _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;deoxy nucleic acid, d(CGCGCG)2, Z-DNA, N1-{2-[2-(2-Amino-ethylamino)-ethylamino]-ethyl}-ethane-1, 2-diamine, PA(2222), polyamine, metal free crystal structure, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PAW 101 ? 9 'BINDING SITE FOR RESIDUE PAW A 101' AC2 Software B PAW 102 ? 12 'BINDING SITE FOR RESIDUE PAW B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 2 ? DG A 2 . ? 4_476 ? 2 AC1 9 DC A 3 ? DC A 3 . ? 4_476 ? 3 AC1 9 DC A 3 ? DC A 3 . ? 1_555 ? 4 AC1 9 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC1 9 HOH E . ? HOH A 107 . ? 1_555 ? 6 AC1 9 HOH E . ? HOH A 112 . ? 4_476 ? 7 AC1 9 HOH E . ? HOH A 124 . ? 1_555 ? 8 AC1 9 HOH F . ? HOH B 107 . ? 3_555 ? 9 AC1 9 HOH F . ? HOH B 128 . ? 2_575 ? 10 AC2 12 DG A 2 ? DG A 2 . ? 2_574 ? 11 AC2 12 DC A 5 ? DC A 5 . ? 3_545 ? 12 AC2 12 DG A 6 ? DG A 6 . ? 3_545 ? 13 AC2 12 HOH E . ? HOH A 112 . ? 2_574 ? 14 AC2 12 DG B 2 ? DG B 8 . ? 1_555 ? 15 AC2 12 DG B 2 ? DG B 8 . ? 1_455 ? 16 AC2 12 DC B 3 ? DC B 9 . ? 1_555 ? 17 AC2 12 DG B 4 ? DG B 10 . ? 1_555 ? 18 AC2 12 HOH F . ? HOH B 112 . ? 1_455 ? 19 AC2 12 HOH F . ? HOH B 116 . ? 1_555 ? 20 AC2 12 HOH F . ? HOH B 123 . ? 1_555 ? 21 AC2 12 HOH F . ? HOH B 133 . ? 1_555 ? # _database_PDB_matrix.entry_id 2IE1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IE1 _atom_sites.fract_transf_matrix[1][1] 0.05669 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.03292 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.02292 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DC 3 3 3 DC CYT A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DC 5 5 5 DC CYT A . n A 1 6 DG 6 6 6 DG GUA A . n B 1 1 DC 1 7 7 DC CYT B . n B 1 2 DG 2 8 8 DG GUA B . n B 1 3 DC 3 9 9 DC CYT B . n B 1 4 DG 4 10 10 DG GUA B . n B 1 5 DC 5 11 11 DC CYT B . n B 1 6 DG 6 12 12 DG GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PAW 1 101 1 PAW PA1 A . D 2 PAW 1 102 2 PAW PA2 B . E 3 HOH 1 102 3 HOH WAT A . E 3 HOH 2 103 4 HOH WAT A . E 3 HOH 3 104 6 HOH WAT A . E 3 HOH 4 105 7 HOH WAT A . E 3 HOH 5 106 8 HOH WAT A . E 3 HOH 6 107 9 HOH WAT A . E 3 HOH 7 108 14 HOH WAT A . E 3 HOH 8 109 16 HOH WAT A . E 3 HOH 9 110 18 HOH WAT A . E 3 HOH 10 111 20 HOH WAT A . E 3 HOH 11 112 26 HOH WAT A . E 3 HOH 12 113 27 HOH WAT A . E 3 HOH 13 114 28 HOH WAT A . E 3 HOH 14 115 29 HOH WAT A . E 3 HOH 15 116 33 HOH WAT A . E 3 HOH 16 117 34 HOH WAT A . E 3 HOH 17 118 38 HOH WAT A . E 3 HOH 18 119 42 HOH WAT A . E 3 HOH 19 120 43 HOH WAT A . E 3 HOH 20 121 47 HOH WAT A . E 3 HOH 21 122 48 HOH WAT A . E 3 HOH 22 123 50 HOH WAT A . E 3 HOH 23 124 54 HOH WAT A . E 3 HOH 24 125 55 HOH WAT A . F 3 HOH 1 103 1 HOH WAT B . F 3 HOH 2 104 2 HOH WAT B . F 3 HOH 3 105 5 HOH WAT B . F 3 HOH 4 106 10 HOH WAT B . F 3 HOH 5 107 11 HOH WAT B . F 3 HOH 6 108 12 HOH WAT B . F 3 HOH 7 109 13 HOH WAT B . F 3 HOH 8 110 15 HOH WAT B . F 3 HOH 9 111 17 HOH WAT B . F 3 HOH 10 112 19 HOH WAT B . F 3 HOH 11 113 21 HOH WAT B . F 3 HOH 12 114 22 HOH WAT B . F 3 HOH 13 115 23 HOH WAT B . F 3 HOH 14 116 24 HOH WAT B . F 3 HOH 15 117 25 HOH WAT B . F 3 HOH 16 118 30 HOH WAT B . F 3 HOH 17 119 31 HOH WAT B . F 3 HOH 18 120 32 HOH WAT B . F 3 HOH 19 121 35 HOH WAT B . F 3 HOH 20 122 36 HOH WAT B . F 3 HOH 21 123 37 HOH WAT B . F 3 HOH 22 124 39 HOH WAT B . F 3 HOH 23 125 40 HOH WAT B . F 3 HOH 24 126 41 HOH WAT B . F 3 HOH 25 127 44 HOH WAT B . F 3 HOH 26 128 45 HOH WAT B . F 3 HOH 27 129 46 HOH WAT B . F 3 HOH 28 130 49 HOH WAT B . F 3 HOH 29 131 51 HOH WAT B . F 3 HOH 30 132 52 HOH WAT B . F 3 HOH 31 133 53 HOH WAT B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_575 -x+1/2,-y+2,z+1/2 -1.0000000000 0.0000000000 0.0000000000 8.8200000000 0.0000000000 -1.0000000000 0.0000000000 60.7600000000 0.0000000000 0.0000000000 1.0000000000 21.8150000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-10-25 4 'Structure model' 1 3 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site 6 4 'Structure model' pdbx_database_related 7 4 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 6 4 'Structure model' '_pdbx_database_related.db_name' 7 4 'Structure model' '_pdbx_entity_src_syn.details' 8 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 9 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MERLOT phasing . ? 2 X-PLOR refinement 3.851 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.686 1.512 0.174 0.007 N 2 1 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.275 1.335 -0.060 0.009 N 3 1 C2 A DC 1 ? ? N3 A DC 1 ? ? 1.301 1.353 -0.052 0.008 N 4 1 C4 A DC 1 ? ? C5 A DC 1 ? ? 1.373 1.425 -0.052 0.008 N 5 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 1.442 1.516 -0.074 0.008 N 6 1 N1 A DG 2 ? ? C2 A DG 2 ? ? 1.273 1.373 -0.100 0.008 N 7 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.338 1.391 -0.053 0.007 N 8 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.298 1.374 -0.076 0.007 N 9 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.264 1.341 -0.077 0.010 N 10 1 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.568 1.512 0.056 0.007 N 11 1 C4 A DC 3 ? ? C5 A DC 3 ? ? 1.360 1.425 -0.065 0.008 N 12 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.685 1.593 0.092 0.010 N 13 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.627 1.529 0.098 0.010 N 14 1 N3 A DG 4 ? ? C4 A DG 4 ? ? 1.410 1.350 0.060 0.007 N 15 1 C5 A DG 4 ? ? C6 A DG 4 ? ? 1.355 1.419 -0.064 0.010 N 16 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.321 1.391 -0.070 0.007 N 17 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.250 1.305 -0.055 0.006 N 18 1 C6 A DG 4 ? ? O6 A DG 4 ? ? 1.181 1.237 -0.056 0.009 N 19 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.426 1.509 -0.083 0.011 N 20 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.362 1.446 -0.084 0.010 N 21 1 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.275 1.335 -0.060 0.009 N 22 1 N1 A DC 5 ? ? C2 A DC 5 ? ? 1.335 1.397 -0.062 0.010 N 23 1 N1 A DC 5 ? ? C6 A DC 5 ? ? 1.324 1.367 -0.043 0.006 N 24 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.286 1.335 -0.049 0.007 N 25 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.396 1.521 -0.125 0.010 N 26 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 1.411 1.516 -0.105 0.008 N 27 1 "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.423 1.518 -0.095 0.010 N 28 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 1.360 1.446 -0.086 0.010 N 29 1 "O3'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.354 1.419 -0.065 0.006 N 30 1 N1 A DG 6 ? ? C2 A DG 6 ? ? 1.323 1.373 -0.050 0.008 N 31 1 C4 A DG 6 ? ? C5 A DG 6 ? ? 1.333 1.379 -0.046 0.007 N 32 1 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.263 1.305 -0.042 0.006 N 33 1 C8 A DG 6 ? ? N9 A DG 6 ? ? 1.286 1.374 -0.088 0.007 N 34 1 "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 1.589 1.529 0.060 0.010 N 35 1 N1 B DC 7 ? ? C2 B DC 7 ? ? 1.291 1.397 -0.106 0.010 N 36 1 C2 B DC 7 ? ? N3 B DC 7 ? ? 1.302 1.353 -0.051 0.008 N 37 1 N3 B DC 7 ? ? C4 B DC 7 ? ? 1.256 1.335 -0.079 0.007 N 38 1 "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.416 1.518 -0.102 0.010 N 39 1 N1 B DG 8 ? ? C2 B DG 8 ? ? 1.305 1.373 -0.068 0.008 N 40 1 C4 B DG 8 ? ? C5 B DG 8 ? ? 1.317 1.379 -0.062 0.007 N 41 1 "O3'" B DG 8 ? ? P B DC 9 ? ? 1.468 1.607 -0.139 0.012 Y 42 1 P B DC 9 ? ? "O5'" B DC 9 ? ? 1.492 1.593 -0.101 0.010 N 43 1 N3 B DC 9 ? ? C4 B DC 9 ? ? 1.264 1.335 -0.071 0.007 N 44 1 C4 B DC 9 ? ? C5 B DC 9 ? ? 1.347 1.425 -0.078 0.008 N 45 1 P B DG 10 ? ? "O5'" B DG 10 ? ? 1.435 1.593 -0.158 0.010 N 46 1 "C5'" B DG 10 ? ? "C4'" B DG 10 ? ? 1.390 1.509 -0.119 0.011 N 47 1 "O4'" B DG 10 ? ? "C4'" B DG 10 ? ? 1.348 1.446 -0.098 0.010 N 48 1 C2 B DG 10 ? ? N3 B DG 10 ? ? 1.264 1.323 -0.059 0.008 N 49 1 C4 B DG 10 ? ? C5 B DG 10 ? ? 1.327 1.379 -0.052 0.007 N 50 1 C5 B DG 10 ? ? C6 B DG 10 ? ? 1.326 1.419 -0.093 0.010 N 51 1 C5 B DG 10 ? ? N7 B DG 10 ? ? 1.315 1.388 -0.073 0.006 N 52 1 N7 B DG 10 ? ? C8 B DG 10 ? ? 1.258 1.305 -0.047 0.006 N 53 1 C8 B DG 10 ? ? N9 B DG 10 ? ? 1.298 1.374 -0.076 0.007 N 54 1 N9 B DG 10 ? ? C4 B DG 10 ? ? 1.285 1.375 -0.090 0.008 N 55 1 "C5'" B DC 11 ? ? "C4'" B DC 11 ? ? 1.586 1.512 0.074 0.007 N 56 1 "O3'" B DC 11 ? ? "C3'" B DC 11 ? ? 1.529 1.435 0.094 0.013 N 57 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.286 1.335 -0.049 0.007 N 58 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.364 1.425 -0.061 0.008 N 59 1 "O3'" B DC 11 ? ? P B DG 12 ? ? 1.691 1.607 0.084 0.012 Y 60 1 P B DG 12 ? ? "O5'" B DG 12 ? ? 1.522 1.593 -0.071 0.010 N 61 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 1.612 1.512 0.100 0.007 N 62 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 1.402 1.521 -0.119 0.010 N 63 1 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 1.424 1.516 -0.092 0.008 N 64 1 "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 1.447 1.518 -0.071 0.010 N 65 1 "O3'" B DG 12 ? ? "C3'" B DG 12 ? ? 1.342 1.419 -0.077 0.006 N 66 1 C2 B DG 12 ? ? N3 B DG 12 ? ? 1.248 1.323 -0.075 0.008 N 67 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.283 1.350 -0.067 0.007 N 68 1 C4 B DG 12 ? ? C5 B DG 12 ? ? 1.324 1.379 -0.055 0.007 N 69 1 C5 B DG 12 ? ? C6 B DG 12 ? ? 1.344 1.419 -0.075 0.010 N 70 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.327 1.388 -0.061 0.006 N 71 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.263 1.305 -0.042 0.006 N 72 1 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.267 1.341 -0.074 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 132.86 111.00 21.86 2.50 N 2 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 98.48 104.50 -6.02 0.40 N 3 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 128.00 115.70 12.30 1.20 N 4 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 114.57 110.30 4.27 0.70 N 5 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 123.98 119.90 4.08 0.50 N 6 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 129.17 119.70 9.47 1.20 Y 7 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 99.44 105.70 -6.26 0.90 N 8 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.73 104.50 -2.77 0.40 N 9 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 126.62 115.70 10.92 1.20 N 10 1 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 101.54 110.10 -8.56 1.00 N 11 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 129.03 123.90 5.13 0.60 N 12 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 106.83 111.90 -5.07 0.50 N 13 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 124.84 128.60 -3.76 0.50 N 14 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 104.18 116.20 -12.02 0.90 N 15 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 126.37 119.90 6.47 0.70 N 16 1 P A DC 3 ? ? "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 137.42 120.90 16.52 1.60 N 17 1 "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 92.25 102.20 -9.95 0.70 N 18 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 111.15 102.50 8.65 1.20 N 19 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 98.38 105.90 -7.52 0.80 N 20 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 102.67 108.00 -5.33 0.70 N 21 1 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 126.35 120.30 6.05 0.40 N 22 1 N1 A DC 3 ? ? C2 A DC 3 ? ? N3 A DC 3 ? ? 112.30 119.20 -6.90 0.70 N 23 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 128.39 121.90 6.49 0.70 N 24 1 N3 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 123.54 118.00 5.54 0.70 N 25 1 C5 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 113.01 120.20 -7.19 0.70 N 26 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 135.00 120.90 14.10 1.60 N 27 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 125.56 115.70 9.86 1.20 N 28 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 115.43 111.50 3.93 0.50 N 29 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 114.08 110.80 3.28 0.40 N 30 1 N9 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 102.10 105.40 -3.30 0.40 N 31 1 "O3'" A DG 4 ? ? P A DC 5 ? ? OP1 A DC 5 ? ? 118.54 110.50 8.04 1.10 Y 32 1 "O5'" A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 97.38 105.70 -8.32 0.90 N 33 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 111.74 106.00 5.74 0.60 N 34 1 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 96.45 102.20 -5.75 0.70 N 35 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 102.88 108.00 -5.12 0.70 N 36 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 101.13 109.40 -8.27 0.80 N 37 1 P A DG 6 ? ? "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? 131.50 120.90 10.60 1.60 N 38 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 99.24 104.50 -5.26 0.40 N 39 1 "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? "O4'" A DG 6 ? ? 118.45 109.80 8.65 1.10 N 40 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 112.06 103.10 8.96 0.90 N 41 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 118.36 123.90 -5.54 0.60 N 42 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 116.07 111.90 4.17 0.50 N 43 1 C4 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 108.39 110.80 -2.41 0.40 N 44 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 115.74 119.90 -4.16 0.60 N 45 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 132.22 128.60 3.62 0.60 N 46 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 111.75 106.00 5.75 0.60 N 47 1 "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? "O4'" B DC 7 ? ? 90.44 109.30 -18.86 1.90 N 48 1 "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? "C2'" B DC 7 ? ? 97.16 102.20 -5.04 0.70 N 49 1 C6 B DC 7 ? ? N1 B DC 7 ? ? C2 B DC 7 ? ? 117.47 120.30 -2.83 0.40 N 50 1 C2 B DC 7 ? ? N3 B DC 7 ? ? C4 B DC 7 ? ? 124.87 119.90 4.97 0.50 N 51 1 N3 B DC 7 ? ? C4 B DC 7 ? ? C5 B DC 7 ? ? 116.46 121.90 -5.44 0.40 N 52 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 123.67 118.90 4.77 0.60 N 53 1 N3 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 115.79 121.90 -6.11 0.70 N 54 1 C5 B DC 7 ? ? C4 B DC 7 ? ? N4 B DC 7 ? ? 128.75 120.20 8.55 0.70 N 55 1 "C3'" B DC 7 ? ? "O3'" B DC 7 ? ? P B DG 8 ? ? 135.10 119.70 15.40 1.20 Y 56 1 "C1'" B DG 8 ? ? "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? 114.68 110.30 4.38 0.70 N 57 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 97.03 102.20 -5.17 0.70 N 58 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 100.71 108.00 -7.29 0.70 N 59 1 C8 B DG 8 ? ? N9 B DG 8 ? ? C4 B DG 8 ? ? 102.78 106.40 -3.62 0.40 N 60 1 N9 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 107.98 105.40 2.58 0.40 N 61 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 122.64 116.20 6.44 0.90 N 62 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DC 9 ? ? 128.75 119.70 9.05 1.20 Y 63 1 "C5'" B DC 9 ? ? "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? 124.96 115.70 9.26 1.20 N 64 1 "C5'" B DC 9 ? ? "C4'" B DC 9 ? ? "O4'" B DC 9 ? ? 97.79 109.30 -11.51 1.90 N 65 1 "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? "O3'" B DC 9 ? ? 127.28 112.30 14.98 2.00 N 66 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? "C2'" B DC 9 ? ? 110.95 106.80 4.15 0.50 N 67 1 N1 B DC 9 ? ? C2 B DC 9 ? ? N3 B DC 9 ? ? 111.46 119.20 -7.74 0.70 N 68 1 C2 B DC 9 ? ? N3 B DC 9 ? ? C4 B DC 9 ? ? 125.69 119.90 5.79 0.50 N 69 1 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 127.01 121.90 5.11 0.70 N 70 1 P B DG 10 ? ? "O5'" B DG 10 ? ? "C5'" B DG 10 ? ? 105.57 120.90 -15.33 1.60 N 71 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 101.72 108.00 -6.28 0.70 N 72 1 C5 B DG 10 ? ? N7 B DG 10 ? ? C8 B DG 10 ? ? 100.98 104.30 -3.32 0.50 N 73 1 "C3'" B DG 10 ? ? "O3'" B DG 10 ? ? P B DC 11 ? ? 130.55 119.70 10.85 1.20 Y 74 1 "O3'" B DG 10 ? ? P B DC 11 ? ? "O5'" B DC 11 ? ? 75.87 104.00 -28.13 1.90 Y 75 1 "O5'" B DC 11 ? ? P B DC 11 ? ? OP1 B DC 11 ? ? 121.18 110.70 10.48 1.20 N 76 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 113.38 106.00 7.38 0.60 N 77 1 "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? 91.60 102.20 -10.60 0.70 N 78 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 100.52 105.90 -5.38 0.80 N 79 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 112.84 108.30 4.54 0.30 N 80 1 C6 B DC 11 ? ? N1 B DC 11 ? ? C2 B DC 11 ? ? 117.08 120.30 -3.22 0.40 N 81 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 124.92 118.90 6.02 0.60 N 82 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 114.40 121.90 -7.50 0.70 N 83 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DG 12 ? ? 131.61 119.70 11.91 1.20 Y 84 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 94.96 104.50 -9.54 0.40 N 85 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? "O4'" B DG 12 ? ? 119.11 109.80 9.31 1.10 N 86 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 112.53 103.10 9.43 0.90 N 87 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 113.04 108.30 4.74 0.30 N 88 1 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 102.80 106.40 -3.60 0.40 N 89 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 123.43 116.20 7.23 0.90 N 90 1 N3 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 111.33 119.90 -8.57 0.70 N 91 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 125.24 119.90 5.34 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 2 ? ? 0.160 'SIDE CHAIN' 2 1 DG A 4 ? ? 0.069 'SIDE CHAIN' 3 1 DG A 6 ? ? 0.092 'SIDE CHAIN' 4 1 DC B 7 ? ? 0.070 'SIDE CHAIN' 5 1 DG B 8 ? ? 0.110 'SIDE CHAIN' 6 1 DC B 9 ? ? 0.090 'SIDE CHAIN' 7 1 DG B 10 ? ? 0.147 'SIDE CHAIN' 8 1 DG B 12 ? ? 0.077 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 PAW N1 N N N 75 PAW C2 C N N 76 PAW C3 C N N 77 PAW C5 C N N 78 PAW C6 C N N 79 PAW N4 N N N 80 PAW N7 N N N 81 PAW C8 C N N 82 PAW C9 C N N 83 PAW N10 N N N 84 PAW C11 C N N 85 PAW C12 C N N 86 PAW N13 N N N 87 PAW HN11 H N N 88 PAW HN12 H N N 89 PAW H21 H N N 90 PAW H22 H N N 91 PAW H31 H N N 92 PAW H32 H N N 93 PAW H51 H N N 94 PAW H52 H N N 95 PAW H61 H N N 96 PAW H62 H N N 97 PAW HN4 H N N 98 PAW HN7 H N N 99 PAW H81 H N N 100 PAW H82 H N N 101 PAW H91 H N N 102 PAW H92 H N N 103 PAW HN10 H N N 104 PAW H111 H N N 105 PAW H112 H N N 106 PAW H121 H N N 107 PAW H122 H N N 108 PAW H131 H N N 109 PAW H132 H N N 110 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 PAW N1 C2 sing N N 77 PAW N1 HN11 sing N N 78 PAW N1 HN12 sing N N 79 PAW C2 C3 sing N N 80 PAW C2 H21 sing N N 81 PAW C2 H22 sing N N 82 PAW C3 N4 sing N N 83 PAW C3 H31 sing N N 84 PAW C3 H32 sing N N 85 PAW C5 N4 sing N N 86 PAW C5 C6 sing N N 87 PAW C5 H51 sing N N 88 PAW C5 H52 sing N N 89 PAW C6 N7 sing N N 90 PAW C6 H61 sing N N 91 PAW C6 H62 sing N N 92 PAW N4 HN4 sing N N 93 PAW N7 C8 sing N N 94 PAW N7 HN7 sing N N 95 PAW C8 C9 sing N N 96 PAW C8 H81 sing N N 97 PAW C8 H82 sing N N 98 PAW C9 N10 sing N N 99 PAW C9 H91 sing N N 100 PAW C9 H92 sing N N 101 PAW N10 C11 sing N N 102 PAW N10 HN10 sing N N 103 PAW C11 C12 sing N N 104 PAW C11 H111 sing N N 105 PAW C11 H112 sing N N 106 PAW C12 N13 sing N N 107 PAW C12 H121 sing N N 108 PAW C12 H122 sing N N 109 PAW N13 H131 sing N N 110 PAW N13 H132 sing N N 111 # _ndb_struct_conf_na.entry_id 2IE1 _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.424 -0.322 0.400 3.134 0.206 -2.839 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.032 -0.080 -0.119 -0.222 -4.810 -3.401 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.343 -0.318 0.060 6.660 7.134 -8.324 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.446 -0.334 -0.100 -3.396 3.008 5.990 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 0.051 -0.265 -0.020 -4.927 -8.495 6.118 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.378 -0.164 0.325 5.467 3.526 -0.137 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.161 5.157 3.598 4.201 -8.304 -5.749 -2.692 13.174 5.744 52.075 26.345 -10.935 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 0.010 -0.563 3.250 -4.090 -2.000 -49.930 0.807 -0.280 3.218 2.364 -4.833 -50.123 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.378 5.096 3.649 1.633 -1.645 -7.082 -32.115 9.951 4.509 12.869 12.780 -7.452 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.157 -0.898 3.534 0.089 -2.934 -50.253 1.281 -0.177 3.480 3.451 0.105 -50.333 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.382 5.576 3.056 -2.192 -4.670 -11.978 -18.176 -4.678 4.734 21.142 -9.924 -13.038 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "N-(2-AMINOETHYL)-N'-{2-[(2-AMINOETHYL)AMINO]ETHYL}ETHANE-1,2-DIAMINE" PAW 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DJ6 _pdbx_initial_refinement_model.details '1dj6 in PDB' #