HEADER DNA 16-SEP-06 2IE1 TITLE POLYAMINES STABILIZE LEFT-HANDED Z-DNA. WE FOUND NEW TYPE OF POLYAMINE TITLE 2 WHICH STABILIZE LEFT-HANDED Z-DNA BY X-RAY CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS DEOXY NUCLEIC ACID, D(CGCGCG)2, Z-DNA, N1-{2-[2-(2-AMINO-ETHYLAMINO)- KEYWDS 2 ETHYLAMINO]-ETHYL}-ETHANE-1, 2-DIAMINE, PA(2222), POLYAMINE, METAL KEYWDS 3 FREE CRYSTAL STRUCTURE, DNA EXPDTA X-RAY DIFFRACTION AUTHOR H.OHISHI,M.ODOKO,K.TSUKAMOTO,Y.HIYAMA,N.MAEZAKI,K.GRZESKOWIAK, AUTHOR 2 T.ISHIDA,T.TANAKA,N.OKABE,K.FUKUYAMA REVDAT 4 29-NOV-23 2IE1 1 SOURCE REMARK REVDAT 3 25-OCT-23 2IE1 1 REMARK REVDAT 2 24-FEB-09 2IE1 1 VERSN REVDAT 1 09-OCT-07 2IE1 0 JRNL AUTH H.OHISHI,M.ODOKO,K.TSUKAMOTO,Y.HIYAMA,N.MAEZAKI, JRNL AUTH 2 K.GRZESKOWIAK,T.ISHIDA,T.TANAKA,N.OKABE,K.FUKUYAMA JRNL TITL POLYAMINES STABILIZE LEFT-HANDED Z-DNA. WE FOUND NEW TYPE OF JRNL TITL 2 POLYAMINE WHICH STABILIZE LEFT-HANDED Z-DNA BY X-RAY JRNL TITL 3 CRYSTALLOGRAPHY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 3249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 320 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 240 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NI REMARK 200 OPTICS : MONOCHRO REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3249 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 6400.000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.05500 REMARK 200 R SYM FOR SHELL (I) : 0.04700 REMARK 200 FOR SHELL : 6400. REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MERLOT REMARK 200 STARTING MODEL: 1DJ6 IN PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 23.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 8.82000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 21.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 8.82000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 15.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 8.82000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 60.76000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 21.81500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 C5' DC A 1 C4' 0.174 REMARK 500 DC A 1 C4 DC A 1 N4 -0.060 REMARK 500 DC A 1 C2 DC A 1 N3 -0.052 REMARK 500 DC A 1 C4 DC A 1 C5 -0.052 REMARK 500 DG A 2 C3' DG A 2 C2' -0.074 REMARK 500 DG A 2 N1 DG A 2 C2 -0.100 REMARK 500 DG A 2 C6 DG A 2 N1 -0.053 REMARK 500 DG A 2 C8 DG A 2 N9 -0.076 REMARK 500 DG A 2 C2 DG A 2 N2 -0.077 REMARK 500 DC A 3 C5' DC A 3 C4' 0.056 REMARK 500 DC A 3 C4 DC A 3 C5 -0.065 REMARK 500 DG A 4 P DG A 4 O5' 0.092 REMARK 500 DG A 4 C4' DG A 4 C3' 0.098 REMARK 500 DG A 4 N3 DG A 4 C4 0.060 REMARK 500 DG A 4 C5 DG A 4 C6 -0.064 REMARK 500 DG A 4 C6 DG A 4 N1 -0.070 REMARK 500 DG A 4 N7 DG A 4 C8 -0.055 REMARK 500 DG A 4 C6 DG A 4 O6 -0.056 REMARK 500 DC A 5 C5' DC A 5 C4' -0.083 REMARK 500 DC A 5 O4' DC A 5 C4' -0.084 REMARK 500 DC A 5 C4 DC A 5 N4 -0.060 REMARK 500 DC A 5 N1 DC A 5 C2 -0.062 REMARK 500 DC A 5 N1 DC A 5 C6 -0.043 REMARK 500 DC A 5 N3 DC A 5 C4 -0.049 REMARK 500 DG A 6 C4' DG A 6 C3' -0.125 REMARK 500 DG A 6 C3' DG A 6 C2' -0.105 REMARK 500 DG A 6 C2' DG A 6 C1' -0.095 REMARK 500 DG A 6 O4' DG A 6 C4' -0.086 REMARK 500 DG A 6 O3' DG A 6 C3' -0.065 REMARK 500 DG A 6 N1 DG A 6 C2 -0.050 REMARK 500 DG A 6 C4 DG A 6 C5 -0.046 REMARK 500 DG A 6 N7 DG A 6 C8 -0.042 REMARK 500 DG A 6 C8 DG A 6 N9 -0.088 REMARK 500 DC B 7 C4' DC B 7 C3' 0.060 REMARK 500 DC B 7 N1 DC B 7 C2 -0.106 REMARK 500 DC B 7 C2 DC B 7 N3 -0.051 REMARK 500 DC B 7 N3 DC B 7 C4 -0.079 REMARK 500 DG B 8 C2' DG B 8 C1' -0.102 REMARK 500 DG B 8 N1 DG B 8 C2 -0.068 REMARK 500 DG B 8 C4 DG B 8 C5 -0.062 REMARK 500 DG B 8 O3' DC B 9 P -0.139 REMARK 500 DC B 9 P DC B 9 O5' -0.101 REMARK 500 DC B 9 N3 DC B 9 C4 -0.071 REMARK 500 DC B 9 C4 DC B 9 C5 -0.078 REMARK 500 DG B 10 P DG B 10 O5' -0.158 REMARK 500 DG B 10 C5' DG B 10 C4' -0.119 REMARK 500 DG B 10 O4' DG B 10 C4' -0.098 REMARK 500 DG B 10 C2 DG B 10 N3 -0.059 REMARK 500 DG B 10 C4 DG B 10 C5 -0.052 REMARK 500 DG B 10 C5 DG B 10 C6 -0.093 REMARK 500 REMARK 500 THIS ENTRY HAS 72 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O5' - C5' - C4' ANGL. DEV. = 21.9 DEGREES REMARK 500 DC A 1 O4' - C4' - C3' ANGL. DEV. = -6.0 DEGREES REMARK 500 DC A 1 C5' - C4' - C3' ANGL. DEV. = 12.3 DEGREES REMARK 500 DC A 1 C1' - O4' - C4' ANGL. DEV. = 4.3 DEGREES REMARK 500 DC A 1 C2 - N3 - C4 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC A 1 C3' - O3' - P ANGL. DEV. = 9.5 DEGREES REMARK 500 DG A 2 O5' - P - OP2 ANGL. DEV. = -6.3 DEGREES REMARK 500 DG A 2 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DG A 2 C5' - C4' - C3' ANGL. DEV. = 10.9 DEGREES REMARK 500 DG A 2 C1' - O4' - C4' ANGL. DEV. = -8.6 DEGREES REMARK 500 DG A 2 N1 - C2 - N3 ANGL. DEV. = 5.1 DEGREES REMARK 500 DG A 2 C2 - N3 - C4 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG A 2 N3 - C4 - C5 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG A 2 N1 - C2 - N2 ANGL. DEV. = -12.0 DEGREES REMARK 500 DG A 2 N3 - C2 - N2 ANGL. DEV. = 6.5 DEGREES REMARK 500 DC A 3 P - O5' - C5' ANGL. DEV. = 16.5 DEGREES REMARK 500 DC A 3 C4' - C3' - C2' ANGL. DEV. = -9.9 DEGREES REMARK 500 DC A 3 C3' - C2' - C1' ANGL. DEV. = 8.7 DEGREES REMARK 500 DC A 3 O4' - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 DC A 3 O4' - C1' - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC A 3 C6 - N1 - C2 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC A 3 N1 - C2 - N3 ANGL. DEV. = -6.9 DEGREES REMARK 500 DC A 3 N3 - C2 - O2 ANGL. DEV. = 6.5 DEGREES REMARK 500 DC A 3 N3 - C4 - N4 ANGL. DEV. = 5.5 DEGREES REMARK 500 DC A 3 C5 - C4 - N4 ANGL. DEV. = -7.2 DEGREES REMARK 500 DG A 4 P - O5' - C5' ANGL. DEV. = 14.1 DEGREES REMARK 500 DG A 4 C5' - C4' - C3' ANGL. DEV. = 9.9 DEGREES REMARK 500 DG A 4 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 4 C4 - C5 - N7 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG A 4 N9 - C4 - C5 ANGL. DEV. = -3.3 DEGREES REMARK 500 DC A 5 O3' - P - OP1 ANGL. DEV. = 8.0 DEGREES REMARK 500 DC A 5 O5' - P - OP2 ANGL. DEV. = -8.3 DEGREES REMARK 500 DC A 5 O4' - C4' - C3' ANGL. DEV. = 5.7 DEGREES REMARK 500 DC A 5 C4' - C3' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG A 6 O5' - C5' - C4' ANGL. DEV. = -8.3 DEGREES REMARK 500 DG A 6 P - O5' - C5' ANGL. DEV. = 10.6 DEGREES REMARK 500 DG A 6 O4' - C4' - C3' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG A 6 C5' - C4' - O4' ANGL. DEV. = 8.7 DEGREES REMARK 500 DG A 6 C4' - C3' - C2' ANGL. DEV. = 9.0 DEGREES REMARK 500 DG A 6 N1 - C2 - N3 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG A 6 C2 - N3 - C4 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 6 C4 - C5 - N7 ANGL. DEV. = -2.4 DEGREES REMARK 500 DG A 6 N1 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG A 6 C5 - C6 - O6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC B 7 O4' - C4' - C3' ANGL. DEV. = 5.8 DEGREES REMARK 500 DC B 7 C5' - C4' - O4' ANGL. DEV. = -18.9 DEGREES REMARK 500 DC B 7 C4' - C3' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC B 7 C6 - N1 - C2 ANGL. DEV. = -2.8 DEGREES REMARK 500 DC B 7 C2 - N3 - C4 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 91 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG A 2 0.16 SIDE CHAIN REMARK 500 DG A 4 0.07 SIDE CHAIN REMARK 500 DG A 6 0.09 SIDE CHAIN REMARK 500 DC B 7 0.07 SIDE CHAIN REMARK 500 DG B 8 0.11 SIDE CHAIN REMARK 500 DC B 9 0.09 SIDE CHAIN REMARK 500 DG B 10 0.15 SIDE CHAIN REMARK 500 DG B 12 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAW A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAW B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DJ6 RELATED DB: PDB REMARK 900 DEOXY NUCLEIC ACID AND POLYAMINE COMPLEX REMARK 900 RELATED ID: 292D RELATED DB: PDB REMARK 900 DEOXY NUCLEIC ACID AND POLYAMINE COMPLEX REMARK 900 RELATED ID: 293D RELATED DB: PDB REMARK 900 DEOXY NUCLEIC ACID AND POLYAMINE COMPLEX REMARK 900 RELATED ID: 336D RELATED DB: PDB REMARK 900 DEOXY NUCLEIC ACID AND POLYAMINE COMPLEX REMARK 900 RELATED ID: 2HYH RELATED DB: PDB REMARK 900 DEOXY NUCLEIC ACID AND POLYAMINE COMPLEX REMARK 900 RELATED ID: 2DY6 RELATED DB: PDB REMARK 900 DEOXY NUCLEIC ACID AND POLYAMINE COMPLEX REMARK 900 RELATED ID: 1PE6 RELATED DB: PDB REMARK 900 HYDROLASE (SULFHYDRYL PROTEINASE) REMARK 900 RELATED ID: 1PIP RELATED DB: PDB REMARK 900 HYDROLASE(THIOL PROTEASE) DBREF 2IE1 A 1 6 PDB 2IE1 2IE1 1 6 DBREF 2IE1 B 7 12 PDB 2IE1 2IE1 7 12 SEQRES 1 A 6 DC DG DC DG DC DG SEQRES 1 B 6 DC DG DC DG DC DG HET PAW A 101 13 HET PAW B 102 13 HETNAM PAW N-(2-AMINOETHYL)-N'-{2-[(2-AMINOETHYL) HETNAM 2 PAW AMINO]ETHYL}ETHANE-1,2-DIAMINE HETSYN PAW N1-{2-[2-(2-AMINO-ETHYLAMINO)-ETHYLAMINO]-ETHYL}- HETSYN 2 PAW ETHANE-1,2-DIAMINE FORMUL 3 PAW 2(C8 H23 N5) FORMUL 5 HOH *55(H2 O) SITE 1 AC1 8 DG A 2 DC A 3 DG A 4 HOH A 107 SITE 2 AC1 8 HOH A 112 HOH A 124 HOH B 107 HOH B 128 SITE 1 AC2 11 DG A 2 DC A 5 DG A 6 HOH A 112 SITE 2 AC2 11 DG B 8 DC B 9 DG B 10 HOH B 112 SITE 3 AC2 11 HOH B 116 HOH B 123 HOH B 133 CRYST1 17.640 30.380 43.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.056690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.032920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022920 0.00000