HEADER LYASE 19-SEP-06 2IEX TITLE CRYSTAL STRUCTURE OF DIHYDROXYNAPTHOIC ACID SYNTHETASE (GK2873) FROM TITLE 2 GEOBACILLUS KAUSTOPHILUS HTA426 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROXYNAPTHOIC ACID SYNTHETASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NAPHTHOATE SYNTHASE; COMPND 5 EC: 4.1.3.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 STRAIN: HTA426; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL-21 CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CROTONASE-LIKE FAMILY, BETA-BETA-ALPHA, COENZYME BIOSYNTHESES, KEYWDS 2 NAPHTHOATE SYNTHASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.JEYAKANTHAN,S.P.KANAUJIA,C.VASUKI RANJANI,K.SEKAR,S.BABA,A.EBIHARA, AUTHOR 2 S.KURAMITSU,A.SHINKAI,Y.SHIRO,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2IEX 1 REMARK REVDAT 3 13-JUL-11 2IEX 1 VERSN REVDAT 2 24-FEB-09 2IEX 1 VERSN REVDAT 1 02-OCT-07 2IEX 0 JRNL AUTH J.JEYAKANTHAN,S.P.KANAUJIA,C.VASUKI RANJANI,K.SEKAR,S.BABA, JRNL AUTH 2 A.EBIHARA,S.KURAMITSU,A.SHINKAI,Y.SHIRO,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF DIHYDROXYNAPTHOIC ACID SYNTHETASE JRNL TITL 2 (GK2873) FROM GEOBACILLUS KAUSTOPHILUS HTA426 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 8448938.040 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 33598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1667 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3771 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 195 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5923 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 726 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.20000 REMARK 3 B22 (A**2) : 5.09000 REMARK 3 B33 (A**2) : -1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.184 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.980 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 75.76 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : WATER_PROTIN.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI-111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : RH COATED BENT-CYRINDRICAL REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33813 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.08000 REMARK 200 R SYM FOR SHELL (I) : 0.08100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1Q51 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PENTAERYTHRITOL ETHOCYLATE, 0.05M REMARK 280 AMMONIUM SULFATE, TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.84300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.84300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.50650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.32900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.50650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.32900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.84300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.50650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.32900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.84300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.50650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.32900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CRYSTALLOGRAPHIC SYMMETRIC UNIT WHICH CONSISTS OF REMARK 300 TRIMER (A, B AND C), BIOLOGICAL UNIT IS TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 33090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -204.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 77.01300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.84300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 425 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PHE A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 76 REMARK 465 LYS A 77 REMARK 465 VAL A 78 REMARK 465 ARG A 79 REMARK 465 GLY A 80 REMARK 465 HIS A 81 REMARK 465 GLY A 82 REMARK 465 GLY A 83 REMARK 465 TYR A 84 REMARK 465 VAL A 85 REMARK 465 GLY A 86 REMARK 465 GLU A 87 REMARK 465 ASP A 88 REMARK 465 GLU A 89 REMARK 465 ILE A 90 REMARK 465 MET B 1 REMARK 465 ASP B 75 REMARK 465 GLN B 76 REMARK 465 LYS B 77 REMARK 465 VAL B 78 REMARK 465 ARG B 79 REMARK 465 GLY B 80 REMARK 465 HIS B 81 REMARK 465 GLY B 82 REMARK 465 GLY B 83 REMARK 465 TYR B 84 REMARK 465 VAL B 85 REMARK 465 GLY B 86 REMARK 465 GLU B 87 REMARK 465 ASP B 88 REMARK 465 GLU B 89 REMARK 465 ILE B 90 REMARK 465 PRO B 91 REMARK 465 ARG B 92 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 PHE C 3 REMARK 465 GLU C 4 REMARK 465 GLN C 76 REMARK 465 LYS C 77 REMARK 465 VAL C 78 REMARK 465 ARG C 79 REMARK 465 GLY C 80 REMARK 465 HIS C 81 REMARK 465 GLY C 82 REMARK 465 GLY C 83 REMARK 465 TYR C 84 REMARK 465 VAL C 85 REMARK 465 GLY C 86 REMARK 465 GLU C 87 REMARK 465 ASP C 88 REMARK 465 GLU C 89 REMARK 465 ILE C 90 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 71 CB - CA - C ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 92 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 CYS B 71 CB - CA - C ANGL. DEV. = 7.4 DEGREES REMARK 500 GLY C 66 N - CA - C ANGL. DEV. = 21.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 108.86 -47.11 REMARK 500 TYR A 19 114.91 -172.61 REMARK 500 ARG A 29 46.01 -144.18 REMARK 500 ASP A 54 96.76 -69.71 REMARK 500 SER A 55 -8.63 -59.19 REMARK 500 LEU A 93 55.80 -101.80 REMARK 500 PRO A 106 34.93 -70.20 REMARK 500 ALA A 155 -73.78 -101.43 REMARK 500 ARG A 270 -168.80 -109.89 REMARK 500 PHE A 271 94.05 -166.28 REMARK 500 TYR B 19 -94.36 -105.59 REMARK 500 ASN B 28 61.43 -113.74 REMARK 500 PRO B 106 32.83 -69.69 REMARK 500 THR B 142 25.10 -140.82 REMARK 500 PRO B 144 1.74 -64.16 REMARK 500 SER B 148 -173.35 -175.62 REMARK 500 ALA B 155 -71.06 -107.20 REMARK 500 GLN C 8 -77.84 -110.72 REMARK 500 TYR C 19 112.69 -164.38 REMARK 500 ASN C 28 68.99 -110.95 REMARK 500 LYS C 68 33.97 -141.02 REMARK 500 ALA C 69 121.34 -171.16 REMARK 500 CYS C 71 125.98 -177.37 REMARK 500 ARG C 92 143.19 -174.21 REMARK 500 PRO C 106 -3.13 -53.06 REMARK 500 ALA C 155 -76.01 -105.66 REMARK 500 ILE C 161 -56.45 -124.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE B 271 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GKA001002873.1 RELATED DB: TARGETDB DBREF 2IEX A 1 272 UNP Q5KVX8 Q5KVX8_GEOKA 1 272 DBREF 2IEX B 1 272 UNP Q5KVX8 Q5KVX8_GEOKA 1 272 DBREF 2IEX C 1 272 UNP Q5KVX8 Q5KVX8_GEOKA 1 272 SEQRES 1 A 272 MET PRO PHE GLU TRP VAL LYS GLN TYR ASP TYR GLU ASP SEQRES 2 A 272 ILE ILE TYR GLU THR TYR ASN GLY ILE ALA LYS ILE THR SEQRES 3 A 272 ILE ASN ARG PRO GLU VAL HIS ASN ALA PHE ARG PRO LYS SEQRES 4 A 272 THR VAL ASN GLU MET ILE ASP ALA PHE THR LYS ALA ARG SEQRES 5 A 272 ASP ASP SER ASN ILE GLY VAL ILE ILE LEU THR GLY ALA SEQRES 6 A 272 GLY GLY LYS ALA PHE CYS SER GLY GLY ASP GLN LYS VAL SEQRES 7 A 272 ARG GLY HIS GLY GLY TYR VAL GLY GLU ASP GLU ILE PRO SEQRES 8 A 272 ARG LEU ASN VAL LEU ASP LEU GLN ARG LEU ILE ARG VAL SEQRES 9 A 272 ILE PRO LYS PRO VAL ILE ALA MET VAL ALA GLY TYR ALA SEQRES 10 A 272 ILE GLY GLY GLY HIS VAL LEU HIS VAL VAL CYS ASP LEU SEQRES 11 A 272 THR ILE ALA ALA ASP ASN ALA ILE PHE GLY GLN THR GLY SEQRES 12 A 272 PRO LYS VAL GLY SER PHE ASP GLY GLY TYR GLY ALA GLY SEQRES 13 A 272 TYR LEU ALA ARG ILE VAL GLY HIS LYS LYS ALA ARG GLU SEQRES 14 A 272 ILE TRP TYR LEU CYS ARG GLN TYR THR ALA GLN GLU ALA SEQRES 15 A 272 LEU GLU MET GLY LEU VAL ASN LYS VAL VAL PRO LEU GLU SEQRES 16 A 272 GLN LEU GLU GLU GLU THR VAL LYS TRP ALA GLN GLU ILE SEQRES 17 A 272 LEU GLU LYS SER PRO THR ALA ILE ARG PHE LEU LYS ALA SEQRES 18 A 272 ALA PHE ASN ALA ASP SER ASP GLY LEU ALA GLY ILE GLN SEQRES 19 A 272 GLN LEU ALA GLY ASP ALA THR LEU LEU PHE TYR THR THR SEQRES 20 A 272 GLU GLU ALA LYS GLU GLY MET ARG ALA PHE LYS GLU LYS SEQRES 21 A 272 ARG LYS PRO ASP PHE SER GLN PHE PRO ARG PHE PRO SEQRES 1 B 272 MET PRO PHE GLU TRP VAL LYS GLN TYR ASP TYR GLU ASP SEQRES 2 B 272 ILE ILE TYR GLU THR TYR ASN GLY ILE ALA LYS ILE THR SEQRES 3 B 272 ILE ASN ARG PRO GLU VAL HIS ASN ALA PHE ARG PRO LYS SEQRES 4 B 272 THR VAL ASN GLU MET ILE ASP ALA PHE THR LYS ALA ARG SEQRES 5 B 272 ASP ASP SER ASN ILE GLY VAL ILE ILE LEU THR GLY ALA SEQRES 6 B 272 GLY GLY LYS ALA PHE CYS SER GLY GLY ASP GLN LYS VAL SEQRES 7 B 272 ARG GLY HIS GLY GLY TYR VAL GLY GLU ASP GLU ILE PRO SEQRES 8 B 272 ARG LEU ASN VAL LEU ASP LEU GLN ARG LEU ILE ARG VAL SEQRES 9 B 272 ILE PRO LYS PRO VAL ILE ALA MET VAL ALA GLY TYR ALA SEQRES 10 B 272 ILE GLY GLY GLY HIS VAL LEU HIS VAL VAL CYS ASP LEU SEQRES 11 B 272 THR ILE ALA ALA ASP ASN ALA ILE PHE GLY GLN THR GLY SEQRES 12 B 272 PRO LYS VAL GLY SER PHE ASP GLY GLY TYR GLY ALA GLY SEQRES 13 B 272 TYR LEU ALA ARG ILE VAL GLY HIS LYS LYS ALA ARG GLU SEQRES 14 B 272 ILE TRP TYR LEU CYS ARG GLN TYR THR ALA GLN GLU ALA SEQRES 15 B 272 LEU GLU MET GLY LEU VAL ASN LYS VAL VAL PRO LEU GLU SEQRES 16 B 272 GLN LEU GLU GLU GLU THR VAL LYS TRP ALA GLN GLU ILE SEQRES 17 B 272 LEU GLU LYS SER PRO THR ALA ILE ARG PHE LEU LYS ALA SEQRES 18 B 272 ALA PHE ASN ALA ASP SER ASP GLY LEU ALA GLY ILE GLN SEQRES 19 B 272 GLN LEU ALA GLY ASP ALA THR LEU LEU PHE TYR THR THR SEQRES 20 B 272 GLU GLU ALA LYS GLU GLY MET ARG ALA PHE LYS GLU LYS SEQRES 21 B 272 ARG LYS PRO ASP PHE SER GLN PHE PRO ARG PHE PRO SEQRES 1 C 272 MET PRO PHE GLU TRP VAL LYS GLN TYR ASP TYR GLU ASP SEQRES 2 C 272 ILE ILE TYR GLU THR TYR ASN GLY ILE ALA LYS ILE THR SEQRES 3 C 272 ILE ASN ARG PRO GLU VAL HIS ASN ALA PHE ARG PRO LYS SEQRES 4 C 272 THR VAL ASN GLU MET ILE ASP ALA PHE THR LYS ALA ARG SEQRES 5 C 272 ASP ASP SER ASN ILE GLY VAL ILE ILE LEU THR GLY ALA SEQRES 6 C 272 GLY GLY LYS ALA PHE CYS SER GLY GLY ASP GLN LYS VAL SEQRES 7 C 272 ARG GLY HIS GLY GLY TYR VAL GLY GLU ASP GLU ILE PRO SEQRES 8 C 272 ARG LEU ASN VAL LEU ASP LEU GLN ARG LEU ILE ARG VAL SEQRES 9 C 272 ILE PRO LYS PRO VAL ILE ALA MET VAL ALA GLY TYR ALA SEQRES 10 C 272 ILE GLY GLY GLY HIS VAL LEU HIS VAL VAL CYS ASP LEU SEQRES 11 C 272 THR ILE ALA ALA ASP ASN ALA ILE PHE GLY GLN THR GLY SEQRES 12 C 272 PRO LYS VAL GLY SER PHE ASP GLY GLY TYR GLY ALA GLY SEQRES 13 C 272 TYR LEU ALA ARG ILE VAL GLY HIS LYS LYS ALA ARG GLU SEQRES 14 C 272 ILE TRP TYR LEU CYS ARG GLN TYR THR ALA GLN GLU ALA SEQRES 15 C 272 LEU GLU MET GLY LEU VAL ASN LYS VAL VAL PRO LEU GLU SEQRES 16 C 272 GLN LEU GLU GLU GLU THR VAL LYS TRP ALA GLN GLU ILE SEQRES 17 C 272 LEU GLU LYS SER PRO THR ALA ILE ARG PHE LEU LYS ALA SEQRES 18 C 272 ALA PHE ASN ALA ASP SER ASP GLY LEU ALA GLY ILE GLN SEQRES 19 C 272 GLN LEU ALA GLY ASP ALA THR LEU LEU PHE TYR THR THR SEQRES 20 C 272 GLU GLU ALA LYS GLU GLY MET ARG ALA PHE LYS GLU LYS SEQRES 21 C 272 ARG LYS PRO ASP PHE SER GLN PHE PRO ARG PHE PRO FORMUL 4 HOH *726(H2 O) HELIX 1 1 ARG A 29 HIS A 33 5 5 HELIX 2 2 ARG A 37 ASP A 54 1 18 HELIX 3 3 ASN A 94 ILE A 105 1 12 HELIX 4 4 GLY A 119 CYS A 128 1 10 HELIX 5 5 THR A 142 GLY A 147 1 6 HELIX 6 6 ALA A 155 GLY A 163 1 9 HELIX 7 7 GLY A 163 CYS A 174 1 12 HELIX 8 8 ALA A 179 MET A 185 1 7 HELIX 9 9 PRO A 193 GLU A 195 5 3 HELIX 10 10 GLN A 196 LEU A 209 1 14 HELIX 11 11 SER A 212 ASP A 226 1 15 HELIX 12 12 ASP A 228 TYR A 245 1 18 HELIX 13 13 THR A 247 GLU A 259 1 13 HELIX 14 14 ARG B 29 HIS B 33 5 5 HELIX 15 15 ARG B 37 ASP B 54 1 18 HELIX 16 16 ASN B 94 ILE B 105 1 12 HELIX 17 17 GLY B 119 CYS B 128 1 10 HELIX 18 18 THR B 142 GLY B 147 1 6 HELIX 19 19 ALA B 155 GLY B 163 1 9 HELIX 20 20 GLY B 163 CYS B 174 1 12 HELIX 21 21 ALA B 179 MET B 185 1 7 HELIX 22 22 PRO B 193 GLU B 195 5 3 HELIX 23 23 GLN B 196 GLU B 210 1 15 HELIX 24 24 SER B 212 ASP B 226 1 15 HELIX 25 25 ASP B 228 THR B 246 1 19 HELIX 26 26 THR B 247 GLU B 259 1 13 HELIX 27 27 ASP B 264 PHE B 268 5 5 HELIX 28 28 ARG C 29 HIS C 33 5 5 HELIX 29 29 ARG C 37 ASP C 54 1 18 HELIX 30 30 ASN C 94 ILE C 105 1 12 HELIX 31 31 GLY C 119 CYS C 128 1 10 HELIX 32 32 THR C 142 GLY C 147 1 6 HELIX 33 33 ALA C 155 GLY C 163 1 9 HELIX 34 34 GLY C 163 CYS C 174 1 12 HELIX 35 35 THR C 178 MET C 185 1 8 HELIX 36 36 PRO C 193 GLU C 195 5 3 HELIX 37 37 GLN C 196 GLU C 210 1 15 HELIX 38 38 SER C 212 ASP C 226 1 15 HELIX 39 39 ASP C 228 TYR C 245 1 18 HELIX 40 40 THR C 247 ALA C 256 1 10 SHEET 1 A 6 ILE A 14 TYR A 19 0 SHEET 2 A 6 ILE A 22 ILE A 27 -1 O THR A 26 N ILE A 15 SHEET 3 A 6 VAL A 59 GLY A 64 1 O ILE A 61 N ALA A 23 SHEET 4 A 6 VAL A 109 VAL A 113 1 O MET A 112 N LEU A 62 SHEET 5 A 6 LEU A 130 ALA A 134 1 O LEU A 130 N ALA A 111 SHEET 6 A 6 LYS A 190 VAL A 192 1 O LYS A 190 N ALA A 133 SHEET 1 B 4 ALA A 69 CYS A 71 0 SHEET 2 B 4 TYR A 116 ILE A 118 1 O TYR A 116 N PHE A 70 SHEET 3 B 4 ILE A 138 GLY A 140 1 O ILE A 138 N ALA A 117 SHEET 4 B 4 TYR A 177 THR A 178 -1 O TYR A 177 N PHE A 139 SHEET 1 C 7 VAL B 6 LYS B 7 0 SHEET 2 C 7 ILE B 14 THR B 18 -1 O THR B 18 N VAL B 6 SHEET 3 C 7 ILE B 22 ILE B 27 -1 O LYS B 24 N GLU B 17 SHEET 4 C 7 VAL B 59 GLY B 64 1 O ILE B 61 N ALA B 23 SHEET 5 C 7 VAL B 109 VAL B 113 1 O ILE B 110 N ILE B 60 SHEET 6 C 7 LEU B 130 ALA B 134 1 O LEU B 130 N ALA B 111 SHEET 7 C 7 LYS B 190 VAL B 192 1 O LYS B 190 N ALA B 133 SHEET 1 D 4 ALA B 69 CYS B 71 0 SHEET 2 D 4 TYR B 116 ILE B 118 1 O TYR B 116 N PHE B 70 SHEET 3 D 4 ILE B 138 GLY B 140 1 O ILE B 138 N ALA B 117 SHEET 4 D 4 TYR B 177 THR B 178 -1 O TYR B 177 N PHE B 139 SHEET 1 E 7 VAL C 6 LYS C 7 0 SHEET 2 E 7 ILE C 14 TYR C 19 -1 O THR C 18 N VAL C 6 SHEET 3 E 7 ILE C 22 ILE C 27 -1 O LYS C 24 N GLU C 17 SHEET 4 E 7 VAL C 59 GLY C 64 1 O ILE C 61 N ALA C 23 SHEET 5 E 7 VAL C 109 VAL C 113 1 O ILE C 110 N ILE C 60 SHEET 6 E 7 LEU C 130 ALA C 134 1 O LEU C 130 N ALA C 111 SHEET 7 E 7 LYS C 190 VAL C 192 1 O LYS C 190 N ALA C 133 SHEET 1 F 3 ALA C 69 CYS C 71 0 SHEET 2 F 3 TYR C 116 ILE C 118 1 O TYR C 116 N PHE C 70 SHEET 3 F 3 ILE C 138 GLY C 140 1 O ILE C 138 N ALA C 117 CISPEP 1 PHE C 271 PRO C 272 0 1.46 CRYST1 77.013 130.658 131.686 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007594 0.00000