HEADER SIGNALING PROTEIN 19-SEP-06 2IF0 TITLE CRYSTAL STRUCTURE OF MOUSE RAB27B BOUND TO GDP IN MONOCLINIC SPACE TITLE 2 GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-27B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SOLUBLE DOMAIN; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)LYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS RAB27, GTPASE, RAB, SIGNALING PROTEIN, GDP, SWAPPING EXPDTA X-RAY DIFFRACTION AUTHOR L.M.G.CHAVAS,S.TORII,H.KAMIKUBO,M.KAWASAKI,K.IHARA,R.KATO,M.KATAOKA, AUTHOR 2 T.IZUMI,S.WAKATSUKI REVDAT 7 30-OCT-24 2IF0 1 REMARK REVDAT 6 25-OCT-23 2IF0 1 REMARK SEQADV LINK REVDAT 5 11-APR-12 2IF0 1 JRNL REVDAT 4 13-JUL-11 2IF0 1 VERSN REVDAT 3 24-FEB-09 2IF0 1 VERSN REVDAT 2 26-JUN-07 2IF0 1 JRNL REVDAT 1 01-MAY-07 2IF0 0 JRNL AUTH L.M.G.CHAVAS,S.TORII,H.KAMIKUBO,M.KAWASAKI,K.IHARA,R.KATO, JRNL AUTH 2 M.KATAOKA,T.IZUMI,S.WAKATSUKI JRNL TITL STRUCTURE OF THE SMALL GTPASE RAB27B SHOWS AN UNEXPECTED JRNL TITL 2 SWAPPED DIMER JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 769 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17582168 JRNL DOI 10.1107/S0907444907019725 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 961 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2849 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : 4.24000 REMARK 3 B33 (A**2) : -2.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.967 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.419 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.303 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.586 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.884 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.843 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2965 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4012 ; 1.067 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 345 ; 5.492 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;35.242 ;23.960 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;16.671 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.035 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2218 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1239 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1984 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.058 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.128 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.099 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1777 ; 0.469 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2786 ; 0.826 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1370 ; 0.897 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1226 ; 1.545 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 30 REMARK 3 RESIDUE RANGE : A 94 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2570 30.2269 -20.0007 REMARK 3 T TENSOR REMARK 3 T11: -0.2635 T22: -0.0389 REMARK 3 T33: -0.1318 T12: 0.0226 REMARK 3 T13: -0.0486 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 0.2309 L22: 3.4988 REMARK 3 L33: 2.6802 L12: -0.8603 REMARK 3 L13: -0.5832 L23: 1.5769 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: 0.0240 S13: 0.1243 REMARK 3 S21: 0.1867 S22: -0.0231 S23: -0.3382 REMARK 3 S31: -0.1238 S32: 0.1788 S33: -0.0476 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 30 REMARK 3 RESIDUE RANGE : B 94 B 185 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3665 -3.3262 -18.0739 REMARK 3 T TENSOR REMARK 3 T11: -0.0814 T22: -0.2700 REMARK 3 T33: -0.1270 T12: 0.0587 REMARK 3 T13: -0.0018 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 2.3995 L22: 0.9189 REMARK 3 L33: 4.2076 L12: 0.9875 REMARK 3 L13: 1.4942 L23: 1.9109 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: 0.2138 S13: 0.0329 REMARK 3 S21: 0.4421 S22: 0.1643 S23: -0.1320 REMARK 3 S31: 0.2316 S32: 0.5110 S33: -0.0508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUAMTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 76.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2IEZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, CACODYLATE, PH 5.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.48000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.66350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.37750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.66350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.37750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAIN A AND CHAIN B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 ASP A 5 REMARK 465 THR A 55 REMARK 465 GLN A 56 REMARK 465 GLY A 57 REMARK 465 ALA A 58 REMARK 465 ASP A 59 REMARK 465 GLY A 60 REMARK 465 ALA A 61 REMARK 465 SER A 62 REMARK 465 GLY A 63 REMARK 465 LYS A 64 REMARK 465 GLU A 190 REMARK 465 LYS A 191 REMARK 465 THR A 192 REMARK 465 GLN A 193 REMARK 465 VAL A 194 REMARK 465 PRO A 195 REMARK 465 ASP A 196 REMARK 465 THR A 197 REMARK 465 VAL A 198 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 4 REMARK 465 ASP B 5 REMARK 465 THR B 55 REMARK 465 GLN B 56 REMARK 465 GLY B 57 REMARK 465 ALA B 58 REMARK 465 ASP B 59 REMARK 465 GLY B 60 REMARK 465 ALA B 61 REMARK 465 SER B 62 REMARK 465 GLY B 63 REMARK 465 LYS B 64 REMARK 465 LYS B 191 REMARK 465 THR B 192 REMARK 465 GLN B 193 REMARK 465 VAL B 194 REMARK 465 PRO B 195 REMARK 465 ASP B 196 REMARK 465 THR B 197 REMARK 465 VAL B 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 115 -4.15 -59.77 REMARK 500 ASN A 169 8.82 58.08 REMARK 500 THR B 30 -61.49 -109.67 REMARK 500 ASP B 31 77.99 53.97 REMARK 500 PHE B 66 -56.90 -162.94 REMARK 500 TYR B 122 -33.96 -35.78 REMARK 500 LYS B 134 36.68 71.27 REMARK 500 LEU B 137 77.97 -113.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 23 OG1 REMARK 620 2 GDP A 501 O1B 77.6 REMARK 620 3 GDP A 501 O2B 129.9 56.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 23 OG1 REMARK 620 2 GDP B1501 O3B 76.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 1501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IEY RELATED DB: PDB REMARK 900 RELATED ID: 2IEZ RELATED DB: PDB DBREF 2IF0 A 1 198 UNP Q99P58 RB27B_MOUSE 0 197 DBREF 2IF0 B 1 198 UNP Q99P58 RB27B_MOUSE 0 197 SEQADV 2IF0 GLY A -1 UNP Q99P58 EXPRESSION TAG SEQADV 2IF0 SER A 0 UNP Q99P58 EXPRESSION TAG SEQADV 2IF0 LEU A 78 UNP Q99P58 GLN 77 ENGINEERED MUTATION SEQADV 2IF0 GLY B -1 UNP Q99P58 EXPRESSION TAG SEQADV 2IF0 SER B 0 UNP Q99P58 EXPRESSION TAG SEQADV 2IF0 LEU B 78 UNP Q99P58 GLN 77 ENGINEERED MUTATION SEQRES 1 A 200 GLY SER MET THR ASP GLY ASP TYR ASP TYR LEU ILE LYS SEQRES 2 A 200 LEU LEU ALA LEU GLY ASP SER GLY VAL GLY LYS THR THR SEQRES 3 A 200 PHE LEU TYR ARG TYR THR ASP ASN LYS PHE ASN PRO LYS SEQRES 4 A 200 PHE ILE THR THR VAL GLY ILE ASP PHE ARG GLU LYS ARG SEQRES 5 A 200 VAL VAL TYR ASP THR GLN GLY ALA ASP GLY ALA SER GLY SEQRES 6 A 200 LYS ALA PHE LYS VAL HIS LEU GLN LEU TRP ASP THR ALA SEQRES 7 A 200 GLY LEU GLU ARG PHE ARG SER LEU THR THR ALA PHE PHE SEQRES 8 A 200 ARG ASP ALA MET GLY PHE LEU LEU MET PHE ASP LEU THR SEQRES 9 A 200 SER GLN GLN SER PHE LEU ASN VAL ARG ASN TRP MET SER SEQRES 10 A 200 GLN LEU GLN ALA ASN ALA TYR CYS GLU ASN PRO ASP ILE SEQRES 11 A 200 VAL LEU ILE GLY ASN LYS ALA ASP LEU PRO ASP GLN ARG SEQRES 12 A 200 GLU VAL ASN GLU ARG GLN ALA ARG GLU LEU ALA GLU LYS SEQRES 13 A 200 TYR GLY ILE PRO TYR PHE GLU THR SER ALA ALA THR GLY SEQRES 14 A 200 GLN ASN VAL GLU LYS SER VAL GLU THR LEU LEU ASP LEU SEQRES 15 A 200 ILE MET LYS ARG MET GLU LYS CYS VAL GLU LYS THR GLN SEQRES 16 A 200 VAL PRO ASP THR VAL SEQRES 1 B 200 GLY SER MET THR ASP GLY ASP TYR ASP TYR LEU ILE LYS SEQRES 2 B 200 LEU LEU ALA LEU GLY ASP SER GLY VAL GLY LYS THR THR SEQRES 3 B 200 PHE LEU TYR ARG TYR THR ASP ASN LYS PHE ASN PRO LYS SEQRES 4 B 200 PHE ILE THR THR VAL GLY ILE ASP PHE ARG GLU LYS ARG SEQRES 5 B 200 VAL VAL TYR ASP THR GLN GLY ALA ASP GLY ALA SER GLY SEQRES 6 B 200 LYS ALA PHE LYS VAL HIS LEU GLN LEU TRP ASP THR ALA SEQRES 7 B 200 GLY LEU GLU ARG PHE ARG SER LEU THR THR ALA PHE PHE SEQRES 8 B 200 ARG ASP ALA MET GLY PHE LEU LEU MET PHE ASP LEU THR SEQRES 9 B 200 SER GLN GLN SER PHE LEU ASN VAL ARG ASN TRP MET SER SEQRES 10 B 200 GLN LEU GLN ALA ASN ALA TYR CYS GLU ASN PRO ASP ILE SEQRES 11 B 200 VAL LEU ILE GLY ASN LYS ALA ASP LEU PRO ASP GLN ARG SEQRES 12 B 200 GLU VAL ASN GLU ARG GLN ALA ARG GLU LEU ALA GLU LYS SEQRES 13 B 200 TYR GLY ILE PRO TYR PHE GLU THR SER ALA ALA THR GLY SEQRES 14 B 200 GLN ASN VAL GLU LYS SER VAL GLU THR LEU LEU ASP LEU SEQRES 15 B 200 ILE MET LYS ARG MET GLU LYS CYS VAL GLU LYS THR GLN SEQRES 16 B 200 VAL PRO ASP THR VAL HET MG A 602 1 HET GDP A 501 28 HET MG B 502 1 HET GDP B1501 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 HOH *14(H2 O) HELIX 1 1 GLY A 21 ASP A 31 1 11 HELIX 2 2 GLY A 77 ARG A 90 1 14 HELIX 3 3 SER A 103 SER A 115 1 13 HELIX 4 4 LEU A 137 ARG A 141 5 5 HELIX 5 5 ASN A 144 TYR A 155 1 12 HELIX 6 6 ASN A 169 VAL A 189 1 21 HELIX 7 7 GLY B 21 ASP B 31 1 11 HELIX 8 8 GLY B 77 ARG B 90 1 14 HELIX 9 9 SER B 103 GLN B 116 1 14 HELIX 10 10 LEU B 137 ARG B 141 5 5 HELIX 11 11 ASN B 144 GLY B 156 1 13 HELIX 12 12 ASN B 169 GLU B 186 1 18 SHEET 1 A12 TYR A 159 GLU A 161 0 SHEET 2 A12 ASP A 127 ASN A 133 1 N GLY A 132 O PHE A 160 SHEET 3 A12 GLY A 94 ASP A 100 1 N LEU A 97 O ILE A 131 SHEET 4 A12 TYR A 8 LEU A 15 1 N LEU A 13 O LEU A 96 SHEET 5 A12 LYS B 67 ALA B 76 1 O HIS B 69 N TYR A 8 SHEET 6 A12 LYS B 37 VAL B 52 -1 N LYS B 49 O LEU B 70 SHEET 7 A12 LYS A 37 TYR A 53 -1 N ILE A 44 O PHE B 38 SHEET 8 A12 PHE A 66 ALA A 76 -1 O PHE A 66 N TYR A 53 SHEET 9 A12 TYR B 8 GLY B 16 1 O LEU B 12 N GLN A 71 SHEET 10 A12 GLY B 94 ASP B 100 1 O LEU B 96 N LEU B 13 SHEET 11 A12 ASP B 127 ASN B 133 1 O ASP B 127 N PHE B 95 SHEET 12 A12 TYR B 159 GLU B 161 1 O PHE B 160 N GLY B 132 SSBOND 1 CYS A 123 CYS A 188 1555 1555 2.04 SSBOND 2 CYS B 123 CYS B 188 1555 1555 2.03 LINK OG1 THR A 23 MG MG A 602 1555 1555 2.27 LINK O1B GDP A 501 MG MG A 602 1555 1555 1.93 LINK O2B GDP A 501 MG MG A 602 1555 1555 2.99 LINK OG1 THR B 23 MG MG B 502 1555 1555 2.24 LINK MG MG B 502 O3B GDP B1501 1555 1555 2.28 SITE 1 AC1 2 THR A 23 GDP A 501 SITE 1 AC2 2 THR B 23 GDP B1501 SITE 1 AC3 14 GLY A 19 VAL A 20 GLY A 21 LYS A 22 SITE 2 AC3 14 THR A 23 THR A 24 ASN A 133 LYS A 134 SITE 3 AC3 14 ASP A 136 LEU A 137 SER A 163 ALA A 164 SITE 4 AC3 14 ALA A 165 MG A 602 SITE 1 AC4 18 ASN A 35 PRO A 36 LYS A 37 ASP B 17 SITE 2 AC4 18 GLY B 19 VAL B 20 GLY B 21 LYS B 22 SITE 3 AC4 18 THR B 23 THR B 24 ASN B 133 LYS B 134 SITE 4 AC4 18 ASP B 136 LEU B 137 SER B 163 ALA B 164 SITE 5 AC4 18 ALA B 165 MG B 502 CRYST1 54.960 64.755 153.327 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018195 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006522 0.00000