data_2IG0 # _entry.id 2IG0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IG0 RCSB RCSB039530 WWPDB D_1000039530 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IG0 _pdbx_database_status.recvd_initial_deposition_date 2006-09-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # _audit_author.name 'Mer, G.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 127 _citation.page_first 1361 _citation.page_last 1373 _citation.year 2006 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17190600 _citation.pdbx_database_id_DOI 10.1016/j.cell.2006.10.043 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Botuyan, M.V.' 1 primary 'Lee, J.' 2 primary 'Ward, I.M.' 3 primary 'Kim, J.E.' 4 primary 'Thompson, J.R.' 5 primary 'Chen, J.' 6 primary 'Mer, G.' 7 # _cell.entry_id 2IG0 _cell.length_a 56.372 _cell.length_b 78.535 _cell.length_c 36.445 _cell.angle_alpha 90.00 _cell.angle_beta 121.20 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2IG0 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumor suppressor p53-binding protein 1' 13944.780 1 ? ? 'tandem tudor domains (resiudes 1484-1603)' ? 2 polymer syn 'Dimethylated Histone H4-K20 peptide' 1354.628 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 180 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'p53-binding protein 1, p53BP1, 53BP1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GHMNSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKG HRKESGELYYSIEKEGQRKWYKRMAVILSLEQGNRLREQYGLG ; ;GHMNSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKG HRKESGELYYSIEKEGQRKWYKRMAVILSLEQGNRLREQYGLG ; A ? 2 'polypeptide(L)' no yes 'KRHR(MLY)VLRDN' KRHRKVLRDN B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 ASN n 1 5 SER n 1 6 PHE n 1 7 VAL n 1 8 GLY n 1 9 LEU n 1 10 ARG n 1 11 VAL n 1 12 VAL n 1 13 ALA n 1 14 LYS n 1 15 TRP n 1 16 SER n 1 17 SER n 1 18 ASN n 1 19 GLY n 1 20 TYR n 1 21 PHE n 1 22 TYR n 1 23 SER n 1 24 GLY n 1 25 LYS n 1 26 ILE n 1 27 THR n 1 28 ARG n 1 29 ASP n 1 30 VAL n 1 31 GLY n 1 32 ALA n 1 33 GLY n 1 34 LYS n 1 35 TYR n 1 36 LYS n 1 37 LEU n 1 38 LEU n 1 39 PHE n 1 40 ASP n 1 41 ASP n 1 42 GLY n 1 43 TYR n 1 44 GLU n 1 45 CYS n 1 46 ASP n 1 47 VAL n 1 48 LEU n 1 49 GLY n 1 50 LYS n 1 51 ASP n 1 52 ILE n 1 53 LEU n 1 54 LEU n 1 55 CYS n 1 56 ASP n 1 57 PRO n 1 58 ILE n 1 59 PRO n 1 60 LEU n 1 61 ASP n 1 62 THR n 1 63 GLU n 1 64 VAL n 1 65 THR n 1 66 ALA n 1 67 LEU n 1 68 SER n 1 69 GLU n 1 70 ASP n 1 71 GLU n 1 72 TYR n 1 73 PHE n 1 74 SER n 1 75 ALA n 1 76 GLY n 1 77 VAL n 1 78 VAL n 1 79 LYS n 1 80 GLY n 1 81 HIS n 1 82 ARG n 1 83 LYS n 1 84 GLU n 1 85 SER n 1 86 GLY n 1 87 GLU n 1 88 LEU n 1 89 TYR n 1 90 TYR n 1 91 SER n 1 92 ILE n 1 93 GLU n 1 94 LYS n 1 95 GLU n 1 96 GLY n 1 97 GLN n 1 98 ARG n 1 99 LYS n 1 100 TRP n 1 101 TYR n 1 102 LYS n 1 103 ARG n 1 104 MET n 1 105 ALA n 1 106 VAL n 1 107 ILE n 1 108 LEU n 1 109 SER n 1 110 LEU n 1 111 GLU n 1 112 GLN n 1 113 GLY n 1 114 ASN n 1 115 ARG n 1 116 LEU n 1 117 ARG n 1 118 GLU n 1 119 GLN n 1 120 TYR n 1 121 GLY n 1 122 LEU n 1 123 GLY n 2 1 LYS n 2 2 ARG n 2 3 HIS n 2 4 ARG n 2 5 MLY n 2 6 VAL n 2 7 LEU n 2 8 ARG n 2 9 ASP n 2 10 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene TP53BP1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PTEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TP53B_HUMAN Q12888 1 ;NSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRK ESGELYYSIEKEGQRKWYKRMAVILSLEQGNRLREQYGLG ; 1484 ? 2 PDB 2IG0 2IG0 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IG0 A 4 ? 123 ? Q12888 1484 ? 1603 ? 1484 1603 2 2 2IG0 B 1 ? 10 ? 2IG0 16 ? 25 ? 16 25 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IG0 GLY A 1 ? UNP Q12888 ? ? 'CLONING ARTIFACT' 1481 1 1 2IG0 HIS A 2 ? UNP Q12888 ? ? 'CLONING ARTIFACT' 1482 2 1 2IG0 MET A 3 ? UNP Q12888 ? ? 'CLONING ARTIFACT' 1483 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2IG0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '2% PEG 400, 0.1M HEPES/NA, 2M AMMONIUM SULFATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2005-10-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12B _diffrn_source.pdbx_wavelength 0.97950 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2IG0 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 24.11 _reflns.number_all 11776 _reflns.number_obs 11776 _reflns.percent_possible_obs 82.96 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.700 _reflns_shell.d_res_low 1.744 _reflns_shell.percent_possible_all 30.34 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2IG0 _refine.ls_number_reflns_obs 11775 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.11 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 82.96 _refine.ls_R_factor_obs 0.1798 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1759 _refine.ls_R_factor_R_free 0.25138 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 629 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .966 _refine.correlation_coeff_Fo_to_Fc_free .935 _refine.B_iso_mean 33.516 _refine.aniso_B[1][1] .15 _refine.aniso_B[2][2] -.18 _refine.aniso_B[3][3] .06 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .03 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R .146 _refine.pdbx_overall_ESU_R_Free .155 _refine.overall_SU_ML .096 _refine.overall_SU_B 5.550 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1119 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 191 _refine_hist.number_atoms_total 1315 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 24.11 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .024 .022 ? 1159 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.223 1.987 ? 1581 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.126 5.000 ? 153 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.034 23.393 ? 56 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.098 15.000 ? 210 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.563 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr .189 .200 ? 160 'X-RAY DIFFRACTION' ? r_gen_planes_refined .011 .020 ? 923 'X-RAY DIFFRACTION' ? r_nbd_refined .301 .200 ? 575 'X-RAY DIFFRACTION' ? r_nbtor_refined .316 .200 ? 790 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined .315 .200 ? 170 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined .227 .200 ? 40 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined .411 .200 ? 27 'X-RAY DIFFRACTION' ? r_mcbond_it 1.601 1.500 ? 716 'X-RAY DIFFRACTION' ? r_mcangle_it 2.447 2.000 ? 1130 'X-RAY DIFFRACTION' ? r_scbond_it 3.714 3.000 ? 511 'X-RAY DIFFRACTION' ? r_scangle_it 5.103 4.500 ? 450 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 320 _refine_ls_shell.R_factor_R_work 0.197 _refine_ls_shell.percent_reflns_obs 30.34 _refine_ls_shell.R_factor_R_free 0.212 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2IG0 _struct.title 'Structure of 53BP1/methylated histone peptide complex' _struct.pdbx_descriptor 'Tumor suppressor p53-binding protein 1, Dimethylated Histone H4-K20 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IG0 _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'TANDEM TUDOR DOMAINS, DIMETHYLATED HISTONE H4, DNA REPAIR, CELL CYCLE REGULATION, CELL CYCLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 109 ? ARG A 115 ? SER A 1589 ARG A 1595 1 ? 7 HELX_P HELX_P2 2 LEU A 116 ? GLY A 121 ? LEU A 1596 GLY A 1601 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 4 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id MLY _struct_conn.ptnr2_label_seq_id 5 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 19 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MLY _struct_conn.ptnr2_auth_seq_id 20 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.337 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 56 A . ? ASP 1536 A PRO 57 A ? PRO 1537 A 1 14.01 2 ASP 56 A . ? ASP 1536 A PRO 57 A ? PRO 1537 A 1 -8.62 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 44 ? LEU A 48 ? GLU A 1524 LEU A 1528 A 2 LYS A 34 ? PHE A 39 ? LYS A 1514 PHE A 1519 A 3 PHE A 21 ? GLY A 31 ? PHE A 1501 GLY A 1511 A 4 ARG A 10 ? LYS A 14 ? ARG A 1490 LYS A 1494 A 5 ILE A 52 ? LEU A 53 ? ILE A 1532 LEU A 1533 B 1 GLN A 97 ? LYS A 102 ? GLN A 1577 LYS A 1582 B 2 GLU A 87 ? LYS A 94 ? GLU A 1567 LYS A 1574 B 3 PHE A 73 ? GLU A 84 ? PHE A 1553 GLU A 1564 B 4 GLU A 63 ? LEU A 67 ? GLU A 1543 LEU A 1547 B 5 VAL A 106 ? ILE A 107 ? VAL A 1586 ILE A 1587 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 45 ? O CYS A 1525 N LEU A 37 ? N LEU A 1517 A 2 3 O LYS A 36 ? O LYS A 1516 N ARG A 28 ? N ARG A 1508 A 3 4 O TYR A 22 ? O TYR A 1502 N ALA A 13 ? N ALA A 1493 A 4 5 N VAL A 12 ? N VAL A 1492 O LEU A 53 ? O LEU A 1533 B 1 2 O TYR A 101 ? O TYR A 1581 N TYR A 90 ? N TYR A 1570 B 2 3 O SER A 91 ? O SER A 1571 N LYS A 79 ? N LYS A 1559 B 3 4 O GLY A 76 ? O GLY A 1556 N VAL A 64 ? N VAL A 1544 B 4 5 N THR A 65 ? N THR A 1545 O ILE A 107 ? O ILE A 1587 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH D . ? HOH A 149 . ? 1_555 ? 2 AC1 7 LYS A 79 ? LYS A 1559 . ? 1_555 ? 3 AC1 7 LYS A 83 ? LYS A 1563 . ? 2_656 ? 4 AC1 7 GLU A 84 ? GLU A 1564 . ? 2_656 ? 5 AC1 7 SER A 85 ? SER A 1565 . ? 2_656 ? 6 AC1 7 GLU A 93 ? GLU A 1573 . ? 1_555 ? 7 AC1 7 ARG A 98 ? ARG A 1578 . ? 1_555 ? # _database_PDB_matrix.entry_id 2IG0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IG0 _atom_sites.fract_transf_matrix[1][1] .017739 _atom_sites.fract_transf_matrix[1][2] .000000 _atom_sites.fract_transf_matrix[1][3] .010743 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .012733 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .032078 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1481 ? ? ? A . n A 1 2 HIS 2 1482 ? ? ? A . n A 1 3 MET 3 1483 ? ? ? A . n A 1 4 ASN 4 1484 ? ? ? A . n A 1 5 SER 5 1485 1485 SER SER A . n A 1 6 PHE 6 1486 1486 PHE PHE A . n A 1 7 VAL 7 1487 1487 VAL VAL A . n A 1 8 GLY 8 1488 1488 GLY GLY A . n A 1 9 LEU 9 1489 1489 LEU LEU A . n A 1 10 ARG 10 1490 1490 ARG ARG A . n A 1 11 VAL 11 1491 1491 VAL VAL A . n A 1 12 VAL 12 1492 1492 VAL VAL A . n A 1 13 ALA 13 1493 1493 ALA ALA A . n A 1 14 LYS 14 1494 1494 LYS LYS A . n A 1 15 TRP 15 1495 1495 TRP TRP A . n A 1 16 SER 16 1496 1496 SER SER A . n A 1 17 SER 17 1497 1497 SER SER A . n A 1 18 ASN 18 1498 1498 ASN ASN A . n A 1 19 GLY 19 1499 1499 GLY GLY A . n A 1 20 TYR 20 1500 1500 TYR TYR A . n A 1 21 PHE 21 1501 1501 PHE PHE A . n A 1 22 TYR 22 1502 1502 TYR TYR A . n A 1 23 SER 23 1503 1503 SER SER A . n A 1 24 GLY 24 1504 1504 GLY GLY A . n A 1 25 LYS 25 1505 1505 LYS LYS A . n A 1 26 ILE 26 1506 1506 ILE ILE A . n A 1 27 THR 27 1507 1507 THR THR A . n A 1 28 ARG 28 1508 1508 ARG ARG A . n A 1 29 ASP 29 1509 1509 ASP ASP A . n A 1 30 VAL 30 1510 1510 VAL VAL A . n A 1 31 GLY 31 1511 1511 GLY GLY A . n A 1 32 ALA 32 1512 1512 ALA ALA A . n A 1 33 GLY 33 1513 1513 GLY GLY A . n A 1 34 LYS 34 1514 1514 LYS LYS A . n A 1 35 TYR 35 1515 1515 TYR TYR A . n A 1 36 LYS 36 1516 1516 LYS LYS A . n A 1 37 LEU 37 1517 1517 LEU LEU A . n A 1 38 LEU 38 1518 1518 LEU LEU A . n A 1 39 PHE 39 1519 1519 PHE PHE A . n A 1 40 ASP 40 1520 1520 ASP ASP A . n A 1 41 ASP 41 1521 1521 ASP ASP A . n A 1 42 GLY 42 1522 1522 GLY GLY A . n A 1 43 TYR 43 1523 1523 TYR TYR A . n A 1 44 GLU 44 1524 1524 GLU GLU A . n A 1 45 CYS 45 1525 1525 CYS CYS A . n A 1 46 ASP 46 1526 1526 ASP ASP A . n A 1 47 VAL 47 1527 1527 VAL VAL A . n A 1 48 LEU 48 1528 1528 LEU LEU A . n A 1 49 GLY 49 1529 1529 GLY GLY A . n A 1 50 LYS 50 1530 1530 LYS LYS A . n A 1 51 ASP 51 1531 1531 ASP ASP A . n A 1 52 ILE 52 1532 1532 ILE ILE A . n A 1 53 LEU 53 1533 1533 LEU LEU A . n A 1 54 LEU 54 1534 1534 LEU LEU A . n A 1 55 CYS 55 1535 1535 CYS CYS A . n A 1 56 ASP 56 1536 1536 ASP ASP A . n A 1 57 PRO 57 1537 1537 PRO PRO A . n A 1 58 ILE 58 1538 1538 ILE ILE A . n A 1 59 PRO 59 1539 1539 PRO PRO A . n A 1 60 LEU 60 1540 1540 LEU LEU A . n A 1 61 ASP 61 1541 1541 ASP ASP A . n A 1 62 THR 62 1542 1542 THR THR A . n A 1 63 GLU 63 1543 1543 GLU GLU A . n A 1 64 VAL 64 1544 1544 VAL VAL A . n A 1 65 THR 65 1545 1545 THR THR A . n A 1 66 ALA 66 1546 1546 ALA ALA A . n A 1 67 LEU 67 1547 1547 LEU LEU A . n A 1 68 SER 68 1548 1548 SER SER A . n A 1 69 GLU 69 1549 1549 GLU GLU A . n A 1 70 ASP 70 1550 1550 ASP ASP A . n A 1 71 GLU 71 1551 1551 GLU GLU A . n A 1 72 TYR 72 1552 1552 TYR TYR A . n A 1 73 PHE 73 1553 1553 PHE PHE A . n A 1 74 SER 74 1554 1554 SER SER A . n A 1 75 ALA 75 1555 1555 ALA ALA A . n A 1 76 GLY 76 1556 1556 GLY GLY A . n A 1 77 VAL 77 1557 1557 VAL VAL A . n A 1 78 VAL 78 1558 1558 VAL VAL A . n A 1 79 LYS 79 1559 1559 LYS LYS A . n A 1 80 GLY 80 1560 1560 GLY GLY A . n A 1 81 HIS 81 1561 1561 HIS HIS A . n A 1 82 ARG 82 1562 1562 ARG ARG A . n A 1 83 LYS 83 1563 1563 LYS LYS A . n A 1 84 GLU 84 1564 1564 GLU GLU A . n A 1 85 SER 85 1565 1565 SER SER A . n A 1 86 GLY 86 1566 1566 GLY GLY A . n A 1 87 GLU 87 1567 1567 GLU GLU A . n A 1 88 LEU 88 1568 1568 LEU LEU A . n A 1 89 TYR 89 1569 1569 TYR TYR A . n A 1 90 TYR 90 1570 1570 TYR TYR A . n A 1 91 SER 91 1571 1571 SER SER A . n A 1 92 ILE 92 1572 1572 ILE ILE A . n A 1 93 GLU 93 1573 1573 GLU GLU A . n A 1 94 LYS 94 1574 1574 LYS LYS A . n A 1 95 GLU 95 1575 1575 GLU GLU A . n A 1 96 GLY 96 1576 1576 GLY GLY A . n A 1 97 GLN 97 1577 1577 GLN GLN A . n A 1 98 ARG 98 1578 1578 ARG ARG A . n A 1 99 LYS 99 1579 1579 LYS LYS A . n A 1 100 TRP 100 1580 1580 TRP TRP A . n A 1 101 TYR 101 1581 1581 TYR TYR A . n A 1 102 LYS 102 1582 1582 LYS LYS A . n A 1 103 ARG 103 1583 1583 ARG ARG A . n A 1 104 MET 104 1584 1584 MET MET A . n A 1 105 ALA 105 1585 1585 ALA ALA A . n A 1 106 VAL 106 1586 1586 VAL VAL A . n A 1 107 ILE 107 1587 1587 ILE ILE A . n A 1 108 LEU 108 1588 1588 LEU LEU A . n A 1 109 SER 109 1589 1589 SER SER A . n A 1 110 LEU 110 1590 1590 LEU LEU A . n A 1 111 GLU 111 1591 1591 GLU GLU A . n A 1 112 GLN 112 1592 1592 GLN GLN A . n A 1 113 GLY 113 1593 1593 GLY GLY A . n A 1 114 ASN 114 1594 1594 ASN ASN A . n A 1 115 ARG 115 1595 1595 ARG ARG A . n A 1 116 LEU 116 1596 1596 LEU LEU A . n A 1 117 ARG 117 1597 1597 ARG ARG A . n A 1 118 GLU 118 1598 1598 GLU GLU A . n A 1 119 GLN 119 1599 1599 GLN GLN A . n A 1 120 TYR 120 1600 1600 TYR TYR A . n A 1 121 GLY 121 1601 1601 GLY GLY A . n A 1 122 LEU 122 1602 1602 LEU LEU A . n A 1 123 GLY 123 1603 1603 GLY GLY A . n B 2 1 LYS 1 16 ? ? ? B . n B 2 2 ARG 2 17 ? ? ? B . n B 2 3 HIS 3 18 ? ? ? B . n B 2 4 ARG 4 19 19 ARG ARG B . n B 2 5 MLY 5 20 20 MLY MLY B . n B 2 6 VAL 6 21 ? ? ? B . n B 2 7 LEU 7 22 ? ? ? B . n B 2 8 ARG 8 23 ? ? ? B . n B 2 9 ASP 9 24 ? ? ? B . n B 2 10 ASN 10 25 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 201 1 SO4 SO4 A . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 2 2 HOH HOH A . D 4 HOH 3 3 3 HOH HOH A . D 4 HOH 4 4 4 HOH HOH A . D 4 HOH 5 5 5 HOH HOH A . D 4 HOH 6 6 6 HOH HOH A . D 4 HOH 7 7 7 HOH HOH A . D 4 HOH 8 8 8 HOH HOH A . D 4 HOH 9 9 9 HOH HOH A . D 4 HOH 10 10 10 HOH HOH A . D 4 HOH 11 11 11 HOH HOH A . D 4 HOH 12 12 12 HOH HOH A . D 4 HOH 13 13 13 HOH HOH A . D 4 HOH 14 14 14 HOH HOH A . D 4 HOH 15 15 15 HOH HOH A . D 4 HOH 16 16 16 HOH HOH A . D 4 HOH 17 17 17 HOH HOH A . D 4 HOH 18 18 18 HOH HOH A . D 4 HOH 19 19 19 HOH HOH A . D 4 HOH 20 20 20 HOH HOH A . D 4 HOH 21 21 21 HOH HOH A . D 4 HOH 22 22 22 HOH HOH A . D 4 HOH 23 23 23 HOH HOH A . D 4 HOH 24 24 24 HOH HOH A . D 4 HOH 25 25 25 HOH HOH A . D 4 HOH 26 26 26 HOH HOH A . D 4 HOH 27 27 27 HOH HOH A . D 4 HOH 28 29 29 HOH HOH A . D 4 HOH 29 30 30 HOH HOH A . D 4 HOH 30 31 31 HOH HOH A . D 4 HOH 31 32 32 HOH HOH A . D 4 HOH 32 33 33 HOH HOH A . D 4 HOH 33 34 34 HOH HOH A . D 4 HOH 34 35 35 HOH HOH A . D 4 HOH 35 36 36 HOH HOH A . D 4 HOH 36 37 37 HOH HOH A . D 4 HOH 37 38 38 HOH HOH A . D 4 HOH 38 39 39 HOH HOH A . D 4 HOH 39 40 40 HOH HOH A . D 4 HOH 40 41 41 HOH HOH A . D 4 HOH 41 42 42 HOH HOH A . D 4 HOH 42 43 43 HOH HOH A . D 4 HOH 43 44 44 HOH HOH A . D 4 HOH 44 45 45 HOH HOH A . D 4 HOH 45 46 46 HOH HOH A . D 4 HOH 46 47 47 HOH HOH A . D 4 HOH 47 48 48 HOH HOH A . D 4 HOH 48 49 49 HOH HOH A . D 4 HOH 49 50 50 HOH HOH A . D 4 HOH 50 51 51 HOH HOH A . D 4 HOH 51 52 52 HOH HOH A . D 4 HOH 52 53 53 HOH HOH A . D 4 HOH 53 54 54 HOH HOH A . D 4 HOH 54 55 55 HOH HOH A . D 4 HOH 55 56 56 HOH HOH A . D 4 HOH 56 57 57 HOH HOH A . D 4 HOH 57 58 58 HOH HOH A . D 4 HOH 58 59 59 HOH HOH A . D 4 HOH 59 60 60 HOH HOH A . D 4 HOH 60 61 61 HOH HOH A . D 4 HOH 61 62 62 HOH HOH A . D 4 HOH 62 63 63 HOH HOH A . D 4 HOH 63 64 64 HOH HOH A . D 4 HOH 64 65 65 HOH HOH A . D 4 HOH 65 66 66 HOH HOH A . D 4 HOH 66 67 67 HOH HOH A . D 4 HOH 67 68 68 HOH HOH A . D 4 HOH 68 69 69 HOH HOH A . D 4 HOH 69 70 70 HOH HOH A . D 4 HOH 70 71 71 HOH HOH A . D 4 HOH 71 72 72 HOH HOH A . D 4 HOH 72 73 73 HOH HOH A . D 4 HOH 73 74 74 HOH HOH A . D 4 HOH 74 75 75 HOH HOH A . D 4 HOH 75 76 76 HOH HOH A . D 4 HOH 76 77 77 HOH HOH A . D 4 HOH 77 78 78 HOH HOH A . D 4 HOH 78 79 79 HOH HOH A . D 4 HOH 79 80 80 HOH HOH A . D 4 HOH 80 81 81 HOH HOH A . D 4 HOH 81 82 82 HOH HOH A . D 4 HOH 82 83 83 HOH HOH A . D 4 HOH 83 84 84 HOH HOH A . D 4 HOH 84 85 85 HOH HOH A . D 4 HOH 85 86 86 HOH HOH A . D 4 HOH 86 87 87 HOH HOH A . D 4 HOH 87 88 88 HOH HOH A . D 4 HOH 88 89 89 HOH HOH A . D 4 HOH 89 90 90 HOH HOH A . D 4 HOH 90 91 91 HOH HOH A . D 4 HOH 91 92 92 HOH HOH A . D 4 HOH 92 93 93 HOH HOH A . D 4 HOH 93 94 94 HOH HOH A . D 4 HOH 94 95 95 HOH HOH A . D 4 HOH 95 96 96 HOH HOH A . D 4 HOH 96 97 97 HOH HOH A . D 4 HOH 97 98 98 HOH HOH A . D 4 HOH 98 99 99 HOH HOH A . D 4 HOH 99 100 100 HOH HOH A . D 4 HOH 100 101 101 HOH HOH A . D 4 HOH 101 102 102 HOH HOH A . D 4 HOH 102 103 103 HOH HOH A . D 4 HOH 103 104 104 HOH HOH A . D 4 HOH 104 105 105 HOH HOH A . D 4 HOH 105 106 106 HOH HOH A . D 4 HOH 106 107 107 HOH HOH A . D 4 HOH 107 108 108 HOH HOH A . D 4 HOH 108 109 109 HOH HOH A . D 4 HOH 109 110 110 HOH HOH A . D 4 HOH 110 111 111 HOH HOH A . D 4 HOH 111 112 112 HOH HOH A . D 4 HOH 112 113 113 HOH HOH A . D 4 HOH 113 114 114 HOH HOH A . D 4 HOH 114 115 115 HOH HOH A . D 4 HOH 115 116 116 HOH HOH A . D 4 HOH 116 117 117 HOH HOH A . D 4 HOH 117 118 118 HOH HOH A . D 4 HOH 118 119 119 HOH HOH A . D 4 HOH 119 120 120 HOH HOH A . D 4 HOH 120 121 121 HOH HOH A . D 4 HOH 121 122 122 HOH HOH A . D 4 HOH 122 123 123 HOH HOH A . D 4 HOH 123 124 124 HOH HOH A . D 4 HOH 124 125 125 HOH HOH A . D 4 HOH 125 126 126 HOH HOH A . D 4 HOH 126 127 127 HOH HOH A . D 4 HOH 127 128 128 HOH HOH A . D 4 HOH 128 130 130 HOH HOH A . D 4 HOH 129 131 131 HOH HOH A . D 4 HOH 130 132 132 HOH HOH A . D 4 HOH 131 133 133 HOH HOH A . D 4 HOH 132 134 134 HOH HOH A . D 4 HOH 133 136 136 HOH HOH A . D 4 HOH 134 137 137 HOH HOH A . D 4 HOH 135 138 138 HOH HOH A . D 4 HOH 136 139 139 HOH HOH A . D 4 HOH 137 140 140 HOH HOH A . D 4 HOH 138 141 141 HOH HOH A . D 4 HOH 139 142 142 HOH HOH A . D 4 HOH 140 143 143 HOH HOH A . D 4 HOH 141 144 144 HOH HOH A . D 4 HOH 142 145 145 HOH HOH A . D 4 HOH 143 146 146 HOH HOH A . D 4 HOH 144 147 147 HOH HOH A . D 4 HOH 145 148 148 HOH HOH A . D 4 HOH 146 149 149 HOH HOH A . D 4 HOH 147 150 150 HOH HOH A . D 4 HOH 148 151 151 HOH HOH A . D 4 HOH 149 153 153 HOH HOH A . D 4 HOH 150 154 154 HOH HOH A . D 4 HOH 151 155 155 HOH HOH A . D 4 HOH 152 156 156 HOH HOH A . D 4 HOH 153 157 157 HOH HOH A . D 4 HOH 154 158 158 HOH HOH A . D 4 HOH 155 159 159 HOH HOH A . D 4 HOH 156 160 160 HOH HOH A . D 4 HOH 157 162 162 HOH HOH A . D 4 HOH 158 163 163 HOH HOH A . D 4 HOH 159 164 164 HOH HOH A . D 4 HOH 160 165 165 HOH HOH A . D 4 HOH 161 166 166 HOH HOH A . D 4 HOH 162 167 167 HOH HOH A . D 4 HOH 163 168 168 HOH HOH A . D 4 HOH 164 169 169 HOH HOH A . D 4 HOH 165 170 170 HOH HOH A . D 4 HOH 166 171 171 HOH HOH A . D 4 HOH 167 172 172 HOH HOH A . D 4 HOH 168 173 173 HOH HOH A . D 4 HOH 169 174 174 HOH HOH A . D 4 HOH 170 175 175 HOH HOH A . D 4 HOH 171 176 176 HOH HOH A . D 4 HOH 172 177 177 HOH HOH A . D 4 HOH 173 178 178 HOH HOH A . D 4 HOH 174 179 179 HOH HOH A . D 4 HOH 175 180 180 HOH HOH A . E 4 HOH 1 28 28 HOH HOH B . E 4 HOH 2 129 129 HOH HOH B . E 4 HOH 3 135 135 HOH HOH B . E 4 HOH 4 152 152 HOH HOH B . E 4 HOH 5 161 161 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id MLY _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id MLY _pdbx_struct_mod_residue.auth_seq_id 20 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 65 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-02 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 1531 ? ? NH2 A ARG 1597 ? B 1.69 2 1 O A HOH 131 ? ? O A HOH 170 ? ? 1.76 3 1 CG A MET 1584 ? B O A HOH 116 ? ? 1.90 4 1 O A HOH 131 ? ? O A HOH 139 ? ? 1.92 5 1 OE2 A GLU 1575 ? B O A HOH 47 ? ? 1.98 6 1 O A GLU 1575 ? A O A HOH 178 ? ? 1.99 7 1 O A HOH 138 ? ? O A HOH 163 ? ? 2.01 8 1 O3 A SO4 201 ? ? O A HOH 149 ? ? 2.02 9 1 O A HOH 159 ? ? O A HOH 178 ? ? 2.06 10 1 CH2 B MLY 20 ? ? O B HOH 161 ? ? 2.06 11 1 CG A LEU 1534 ? ? O A HOH 177 ? ? 2.09 12 1 O A GLU 1575 ? B O A HOH 178 ? ? 2.19 13 1 OH A TYR 1523 ? ? O A HOH 172 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 31 ? ? 1_555 O A HOH 31 ? ? 2_656 1.19 2 1 O A HOH 121 ? ? 1_555 O A HOH 122 ? ? 2_656 2.01 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 1490 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 1490 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 1490 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.90 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.40 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 1564 ? A -160.99 117.12 2 1 LEU A 1602 ? ? -96.56 31.36 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id MLY _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 20 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id MLY _pdbx_unobs_or_zero_occ_atoms.label_seq_id 5 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1481 ? A GLY 1 2 1 Y 1 A HIS 1482 ? A HIS 2 3 1 Y 1 A MET 1483 ? A MET 3 4 1 Y 1 A ASN 1484 ? A ASN 4 5 1 Y 1 B LYS 16 ? B LYS 1 6 1 Y 1 B ARG 17 ? B ARG 2 7 1 Y 1 B HIS 18 ? B HIS 3 8 1 Y 1 B VAL 21 ? B VAL 6 9 1 Y 1 B LEU 22 ? B LEU 7 10 1 Y 1 B ARG 23 ? B ARG 8 11 1 Y 1 B ASP 24 ? B ASP 9 12 1 Y 1 B ASN 25 ? B ASN 10 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH #