data_2IH0 # _entry.id 2IH0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2IH0 pdb_00002ih0 10.2210/pdb2ih0/pdb RCSB RCSB039559 ? ? WWPDB D_1000039559 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-03 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' chem_comp_atom 2 6 'Structure model' chem_comp_bond 3 6 'Structure model' database_2 4 6 'Structure model' pdbx_entry_details 5 6 'Structure model' pdbx_modification_feature 6 6 'Structure model' pdbx_nmr_software 7 6 'Structure model' struct_conn 8 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_pdbx_entry_details.has_protein_modification' 4 6 'Structure model' '_pdbx_nmr_software.name' 5 6 'Structure model' '_struct_conn.pdbx_dist_value' 6 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 9 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 11 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 12 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 13 6 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IH0 _pdbx_database_status.recvd_initial_deposition_date 2006-09-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details BMRB 7295 unspecified 'ANALOGUE OF BACILLOMYCIN LC' BMRB 7294 unspecified 'BACILLOMYCIN LC' PDB 2IGZ unspecified 'SOLUTION STRUCTURE OF THE STEROL-DEPENDENT ANTIFUNGAL ANTIBIOTIC BACILLOMYCIN LC' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Volpon, L.' 1 'Tsan, P.' 2 'Besson, F.' 3 'Lancelin, J.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;NMR Structure Determination of a Synthetic Analogue of Bacillomycin Lc Reveals the Strategic Role of L-Asn1 in the Natural Iturinic Antibiotics. ; 'Spectrochim Acta a Mol.Biomol.Spectrosc.' 67 1374 ? 2007 ? ? ? ? ? 17129757 10.1016/J.SAA.2006.10.027 1 'NMR Structure of Active and Inactive Forms of the Sterol-Dependent Antifungal Antibiotic Bacillomycin L' Eur.J.Biochem. 264 200 ? 1999 EJBCAI IX 0014-2956 0262 ? 10447689 10.1046/J.1432-1327.1999.00605.X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Volpon, L.' 1 ? primary 'Tsan, P.' 2 ? primary 'Majer, Z.' 3 ? primary 'Vass, E.' 4 ? primary 'Hollosi, M.' 5 ? primary 'Noguera, V.' 6 ? primary 'Lancelin, J.M.' 7 ? primary 'Besson, F.' 8 ? 1 'Volpon, L.' 9 ? 1 'Besson, F.' 10 ? 1 'Lancelin, J.M.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'BACILLOMYCIN L-3' _entity.formula_weight 884.846 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'SYNTHETIC ANALOGUE OF BACILLOMYCIN LC, WITH BETA ALANINE AND ASP AT POSITIONS 1 AND 2, RESPECTIVELY.' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(BAL)D(DTY)(DSG)SQ(DSN)T' _entity_poly.pdbx_seq_one_letter_code_can XDYNSQST _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 BAL n 1 2 ASP n 1 3 DTY n 1 4 DSG n 1 5 SER n 1 6 GLN n 1 7 DSN n 1 8 THR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'BACILLUS SUBTILIS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1423 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AFC peptide-like . '(3R,12R)-3-amino-12-methyltetradecanoic acid' ? 'C15 H31 N O2' 257.412 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BAL peptide-like . BETA-ALANINE ? 'C3 H7 N O2' 89.093 DSG 'D-peptide linking' . D-ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DTY 'D-peptide linking' . D-TYROSINE ? 'C9 H11 N O3' 181.189 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 BAL 1 1 1 BAL BAL A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 DTY 3 3 3 DTY DTY A . n A 1 4 DSG 4 4 4 DSG DSG A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 DSN 7 7 7 DSN DSN A . n A 1 8 THR 8 8 8 THR THR A . n # _cell.entry_id 2IH0 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IH0 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2IH0 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 2IH0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2IH0 _struct.title 'NMR structure determination of a synthetic analogue of the iturinic antibiotic bacillomycin Lc' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IH0 _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ITURINS, ANTIFUNGAL, CYCLOPEPTIDE, LIPOPEPTIDE, SURFACTANT BACILLOMYCIN, ANTIBIOTIC' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00781 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00781 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2IH0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession NOR00781 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IH0 BAL A 1 ? NOR NOR00781 AFC 1 'engineered mutation' 1 1 1 2IH0 ASP A 2 ? NOR NOR00781 ASN 2 'engineered mutation' 2 2 1 2IH0 GLN A 6 ? NOR NOR00781 GLY 6 'engineered mutation' 6 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A BAL 1 C ? ? ? 1_555 A ASP 2 N ? ? A BAL 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale2 covale both ? A BAL 1 N ? ? ? 1_555 A THR 8 C ? ? A BAL 1 A THR 8 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale3 covale both ? A ASP 2 C ? ? ? 1_555 A DTY 3 N ? ? A ASP 2 A DTY 3 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale4 covale both ? A DTY 3 C ? ? ? 1_555 A DSG 4 N ? ? A DTY 3 A DSG 4 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale5 covale both ? A DSG 4 C ? ? ? 1_555 A SER 5 N ? ? A DSG 4 A SER 5 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale6 covale both ? A GLN 6 C ? ? ? 1_555 A DSN 7 N ? ? A GLN 6 A DSN 7 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale7 covale both ? A DSN 7 C ? ? ? 1_555 A THR 8 N ? ? A DSN 7 A THR 8 1_555 ? ? ? ? ? ? ? 1.343 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 BAL A 1 ? . . . . BAL A 1 ? 1_555 . . . . . . . ? 1 BAL None 'Non-standard residue' 2 BAL A 1 ? THR A 8 ? BAL A 1 ? 1_555 THR A 8 ? 1_555 N C . . . None 'Non-standard linkage' # _pdbx_entry_details.entry_id 2IH0 _pdbx_entry_details.compound_details ;BACILLOMYCIN L-3 IS A CYCLIC HEPTA-LIPOPEPTIDE. HERE, BACILLOMYCIN ANALOGUE IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 13 OD1 A DSG 4 ? ? HG A DSN 7 ? ? 1.60 2 15 HG A SER 5 ? ? OE1 A GLN 6 ? ? 1.59 3 18 HG A SER 5 ? ? OE1 A GLN 6 ? ? 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 2 N A GLN 6 ? ? CA A GLN 6 ? ? C A GLN 6 ? ? 94.29 111.00 -16.71 2.70 N 2 4 N A GLN 6 ? ? CA A GLN 6 ? ? C A GLN 6 ? ? 94.50 111.00 -16.50 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 2 ? ? 63.11 -161.16 2 2 ASP A 2 ? ? 61.24 -156.52 3 3 ASP A 2 ? ? 57.17 -151.34 4 3 DTY A 3 ? ? 88.01 -35.90 5 4 ASP A 2 ? ? 60.18 -155.42 6 4 DSG A 4 ? ? 131.93 53.56 7 5 ASP A 2 ? ? 60.63 -154.06 8 5 DTY A 3 ? ? 85.67 -41.47 9 6 ASP A 2 ? ? 54.52 -158.28 10 7 ASP A 2 ? ? 55.71 -157.70 11 8 ASP A 2 ? ? 64.49 -146.64 12 9 ASP A 2 ? ? 73.41 -159.67 13 10 ASP A 2 ? ? 62.08 -147.62 14 10 DTY A 3 ? ? 89.37 -41.72 15 11 ASP A 2 ? ? 56.21 -158.35 16 12 ASP A 2 ? ? 58.46 -149.27 17 12 DTY A 3 ? ? 84.82 -49.97 18 13 ASP A 2 ? ? 65.53 -155.43 19 13 DSG A 4 ? ? 131.66 34.67 20 14 ASP A 2 ? ? 64.01 -159.60 21 16 DSG A 4 ? ? 100.64 -78.25 22 17 DTY A 3 ? ? 157.53 -56.95 23 19 DTY A 3 ? ? 145.09 -16.13 24 20 DTY A 3 ? ? 140.18 6.38 25 21 DTY A 3 ? ? 149.41 -24.18 26 24 SER A 5 ? ? -178.07 -51.58 27 25 DTY A 3 ? ? 141.08 -34.21 28 25 SER A 5 ? ? -175.68 -56.91 29 26 SER A 5 ? ? -90.08 -73.23 30 28 DTY A 3 ? ? 145.46 -33.28 31 28 SER A 5 ? ? -174.65 -54.25 32 29 DTY A 3 ? ? 159.94 -40.06 33 30 DTY A 3 ? ? 152.29 -30.52 34 30 GLN A 6 ? ? -142.33 -156.59 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 30 _pdbx_validate_peptide_omega.auth_comp_id_1 DSN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 7 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 THR _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 8 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 145.25 # _pdbx_molecule_features.prd_id PRD_000720 _pdbx_molecule_features.name 'BACILLOMYCIN L-3' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;BACILLOMYCIN ANALOGUE IS A CYCLIC HEPTA-LIPOPEPTIDE WITH 8 AMINO-ACIDS OF CONFIGURATION LLDDLLDL THE BETA-ALANINE IS LINKED VIA A PEPTIDE BOND TO BOTH RESIDUES 2 AND 8. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000720 _pdbx_molecule.asym_id A # _pdbx_nmr_ensemble.entry_id 2IH0 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 31 _pdbx_nmr_ensemble.conformer_selection_criteria 'STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS, STRUCTURES WITH THE LOWEST ENERGY' # _pdbx_nmr_representative.entry_id 2IH0 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '6MM SYNTHETIC CYCLOPEPTIDE IN 100% DMSO-D6' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 292 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 DQF-COSY 1 2 1 '2D NOESY' 1 3 1 '2D-TOCSY (HOHAHA)' 1 4 1 2D-ROESY 1 # _pdbx_nmr_details.entry_id 2IH0 _pdbx_nmr_details.text 'THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES' # _pdbx_nmr_refine.entry_id 2IH0 _pdbx_nmr_refine.method 'DISTANCE GEOMETRY SIMULATED ANNEALING' _pdbx_nmr_refine.details ;THE STRUCTURES ARE BASED ON A TOTAL OF 62 RESTRAINTS, 60 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 2 DIHEDRAL ANGLE RESTRAINTS. THE 31 STRUCTURES WERE DIVIDED INTO TWO FAMILIES OF SIMILAR ENERGY WHICH ESSENTIALLY DIFFER IN THE NUMBER AND TYPE OF TURNS. THE TWO FAMILIES ARE S'1 (STRUCTURES 1-14) AND S'2 (STRUCTURES 15-31). ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement 'X-PLOR 3.851, CHARMM 22' ? '(X-PLOR), (CHARMM)' 1 'structure solution' XwinNMR ? ? 2 'structure solution' 'GIFA 4.0' ? ? 3 'structure solution' MOLMOL ? ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AFC N N N N 1 AFC CA C N R 2 AFC CB C N N 3 AFC C C N N 4 AFC O O N N 5 AFC CD C N N 6 AFC CE C N N 7 AFC CF C N N 8 AFC CI C N N 9 AFC CJ C N N 10 AFC CK C N N 11 AFC CL C N N 12 AFC CM C N R 13 AFC CN2 C N N 14 AFC CN1 C N N 15 AFC CO1 C N N 16 AFC CG C N N 17 AFC H H N N 18 AFC HA H N N 19 AFC HG1 H N N 20 AFC HG2 H N N 21 AFC HB2 H N N 22 AFC HB3 H N N 23 AFC HD1 H N N 24 AFC HD2 H N N 25 AFC HE1 H N N 26 AFC HE2 H N N 27 AFC HF1 H N N 28 AFC HF2 H N N 29 AFC HI1 H N N 30 AFC HI2 H N N 31 AFC HJ1 H N N 32 AFC HJ2 H N N 33 AFC HK1 H N N 34 AFC HK2 H N N 35 AFC HL1 H N N 36 AFC HL2 H N N 37 AFC HM H N N 38 AFC HN21 H N N 39 AFC HN22 H N N 40 AFC HN23 H N N 41 AFC HN11 H N N 42 AFC HN12 H N N 43 AFC HO11 H N N 44 AFC HO12 H N N 45 AFC HO13 H N N 46 AFC OXT O N N 47 AFC H2 H N N 48 AFC HXT H N N 49 ASN N N N N 50 ASN CA C N S 51 ASN C C N N 52 ASN O O N N 53 ASN CB C N N 54 ASN CG C N N 55 ASN OD1 O N N 56 ASN ND2 N N N 57 ASN OXT O N N 58 ASN H H N N 59 ASN H2 H N N 60 ASN HA H N N 61 ASN HB2 H N N 62 ASN HB3 H N N 63 ASN HD21 H N N 64 ASN HD22 H N N 65 ASN HXT H N N 66 ASP N N N N 67 ASP CA C N S 68 ASP C C N N 69 ASP O O N N 70 ASP CB C N N 71 ASP CG C N N 72 ASP OD1 O N N 73 ASP OD2 O N N 74 ASP OXT O N N 75 ASP H H N N 76 ASP H2 H N N 77 ASP HA H N N 78 ASP HB2 H N N 79 ASP HB3 H N N 80 ASP HD2 H N N 81 ASP HXT H N N 82 BAL N N N N 83 BAL CB C N N 84 BAL CA C N N 85 BAL C C N N 86 BAL O O N N 87 BAL OXT O N N 88 BAL H H N N 89 BAL H2 H N N 90 BAL HB3 H N N 91 BAL HB2 H N N 92 BAL HA1 H N N 93 BAL HA2 H N N 94 BAL HXT H N N 95 DSG N N N N 96 DSG CA C N R 97 DSG C C N N 98 DSG O O N N 99 DSG CB C N N 100 DSG CG C N N 101 DSG OD1 O N N 102 DSG ND2 N N N 103 DSG OXT O N N 104 DSG H H N N 105 DSG H2 H N N 106 DSG HA H N N 107 DSG HB2 H N N 108 DSG HB3 H N N 109 DSG HD21 H N N 110 DSG HD22 H N N 111 DSG HXT H N N 112 DSN N N N N 113 DSN CA C N R 114 DSN C C N N 115 DSN O O N N 116 DSN OXT O N N 117 DSN CB C N N 118 DSN OG O N N 119 DSN H H N N 120 DSN H2 H N N 121 DSN HA H N N 122 DSN HXT H N N 123 DSN HB2 H N N 124 DSN HB3 H N N 125 DSN HG H N N 126 DTY N N N N 127 DTY CA C N R 128 DTY C C N N 129 DTY O O N N 130 DTY CB C N N 131 DTY CG C Y N 132 DTY CD1 C Y N 133 DTY CD2 C Y N 134 DTY CE1 C Y N 135 DTY CE2 C Y N 136 DTY CZ C Y N 137 DTY OH O N N 138 DTY OXT O N N 139 DTY H H N N 140 DTY H2 H N N 141 DTY HA H N N 142 DTY HB2 H N N 143 DTY HB3 H N N 144 DTY HD1 H N N 145 DTY HD2 H N N 146 DTY HE1 H N N 147 DTY HE2 H N N 148 DTY HH H N N 149 DTY HXT H N N 150 GLN N N N N 151 GLN CA C N S 152 GLN C C N N 153 GLN O O N N 154 GLN CB C N N 155 GLN CG C N N 156 GLN CD C N N 157 GLN OE1 O N N 158 GLN NE2 N N N 159 GLN OXT O N N 160 GLN H H N N 161 GLN H2 H N N 162 GLN HA H N N 163 GLN HB2 H N N 164 GLN HB3 H N N 165 GLN HG2 H N N 166 GLN HG3 H N N 167 GLN HE21 H N N 168 GLN HE22 H N N 169 GLN HXT H N N 170 GLY N N N N 171 GLY CA C N N 172 GLY C C N N 173 GLY O O N N 174 GLY OXT O N N 175 GLY H H N N 176 GLY H2 H N N 177 GLY HA2 H N N 178 GLY HA3 H N N 179 GLY HXT H N N 180 SER N N N N 181 SER CA C N S 182 SER C C N N 183 SER O O N N 184 SER CB C N N 185 SER OG O N N 186 SER OXT O N N 187 SER H H N N 188 SER H2 H N N 189 SER HA H N N 190 SER HB2 H N N 191 SER HB3 H N N 192 SER HG H N N 193 SER HXT H N N 194 THR N N N N 195 THR CA C N S 196 THR C C N N 197 THR O O N N 198 THR CB C N R 199 THR OG1 O N N 200 THR CG2 C N N 201 THR OXT O N N 202 THR H H N N 203 THR H2 H N N 204 THR HA H N N 205 THR HB H N N 206 THR HG1 H N N 207 THR HG21 H N N 208 THR HG22 H N N 209 THR HG23 H N N 210 THR HXT H N N 211 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AFC N H sing N N 1 AFC N CA sing N N 2 AFC CA HA sing N N 3 AFC CA CG sing N N 4 AFC CA CB sing N N 5 AFC CB HB2 sing N N 6 AFC CB HB3 sing N N 7 AFC CB CD sing N N 8 AFC C CG sing N N 9 AFC C O doub N N 10 AFC CD HD1 sing N N 11 AFC CD HD2 sing N N 12 AFC CD CE sing N N 13 AFC CE HE1 sing N N 14 AFC CE HE2 sing N N 15 AFC CE CF sing N N 16 AFC CF HF1 sing N N 17 AFC CF HF2 sing N N 18 AFC CF CI sing N N 19 AFC CI HI1 sing N N 20 AFC CI HI2 sing N N 21 AFC CI CJ sing N N 22 AFC CJ HJ1 sing N N 23 AFC CJ HJ2 sing N N 24 AFC CJ CK sing N N 25 AFC CK HK1 sing N N 26 AFC CK HK2 sing N N 27 AFC CK CL sing N N 28 AFC CL HL1 sing N N 29 AFC CL HL2 sing N N 30 AFC CL CM sing N N 31 AFC CM HM sing N N 32 AFC CM CN2 sing N N 33 AFC CM CN1 sing N N 34 AFC CN2 HN21 sing N N 35 AFC CN2 HN22 sing N N 36 AFC CN2 HN23 sing N N 37 AFC CN1 HN11 sing N N 38 AFC CN1 HN12 sing N N 39 AFC CN1 CO1 sing N N 40 AFC CO1 HO11 sing N N 41 AFC CO1 HO12 sing N N 42 AFC CO1 HO13 sing N N 43 AFC CG HG1 sing N N 44 AFC CG HG2 sing N N 45 AFC OXT C sing N N 46 AFC H2 N sing N N 47 AFC OXT HXT sing N N 48 ASN N CA sing N N 49 ASN N H sing N N 50 ASN N H2 sing N N 51 ASN CA C sing N N 52 ASN CA CB sing N N 53 ASN CA HA sing N N 54 ASN C O doub N N 55 ASN C OXT sing N N 56 ASN CB CG sing N N 57 ASN CB HB2 sing N N 58 ASN CB HB3 sing N N 59 ASN CG OD1 doub N N 60 ASN CG ND2 sing N N 61 ASN ND2 HD21 sing N N 62 ASN ND2 HD22 sing N N 63 ASN OXT HXT sing N N 64 ASP N CA sing N N 65 ASP N H sing N N 66 ASP N H2 sing N N 67 ASP CA C sing N N 68 ASP CA CB sing N N 69 ASP CA HA sing N N 70 ASP C O doub N N 71 ASP C OXT sing N N 72 ASP CB CG sing N N 73 ASP CB HB2 sing N N 74 ASP CB HB3 sing N N 75 ASP CG OD1 doub N N 76 ASP CG OD2 sing N N 77 ASP OD2 HD2 sing N N 78 ASP OXT HXT sing N N 79 BAL N CB sing N N 80 BAL N H sing N N 81 BAL N H2 sing N N 82 BAL CB CA sing N N 83 BAL CB HB3 sing N N 84 BAL CB HB2 sing N N 85 BAL CA C sing N N 86 BAL CA HA1 sing N N 87 BAL CA HA2 sing N N 88 BAL C O doub N N 89 BAL C OXT sing N N 90 BAL OXT HXT sing N N 91 DSG N CA sing N N 92 DSG N H sing N N 93 DSG N H2 sing N N 94 DSG CA C sing N N 95 DSG CA CB sing N N 96 DSG CA HA sing N N 97 DSG C O doub N N 98 DSG C OXT sing N N 99 DSG CB CG sing N N 100 DSG CB HB2 sing N N 101 DSG CB HB3 sing N N 102 DSG CG OD1 doub N N 103 DSG CG ND2 sing N N 104 DSG ND2 HD21 sing N N 105 DSG ND2 HD22 sing N N 106 DSG OXT HXT sing N N 107 DSN N CA sing N N 108 DSN N H sing N N 109 DSN N H2 sing N N 110 DSN CA C sing N N 111 DSN CA CB sing N N 112 DSN CA HA sing N N 113 DSN C O doub N N 114 DSN C OXT sing N N 115 DSN OXT HXT sing N N 116 DSN CB OG sing N N 117 DSN CB HB2 sing N N 118 DSN CB HB3 sing N N 119 DSN OG HG sing N N 120 DTY N CA sing N N 121 DTY N H sing N N 122 DTY N H2 sing N N 123 DTY CA C sing N N 124 DTY CA CB sing N N 125 DTY CA HA sing N N 126 DTY C O doub N N 127 DTY C OXT sing N N 128 DTY CB CG sing N N 129 DTY CB HB2 sing N N 130 DTY CB HB3 sing N N 131 DTY CG CD1 doub Y N 132 DTY CG CD2 sing Y N 133 DTY CD1 CE1 sing Y N 134 DTY CD1 HD1 sing N N 135 DTY CD2 CE2 doub Y N 136 DTY CD2 HD2 sing N N 137 DTY CE1 CZ doub Y N 138 DTY CE1 HE1 sing N N 139 DTY CE2 CZ sing Y N 140 DTY CE2 HE2 sing N N 141 DTY CZ OH sing N N 142 DTY OH HH sing N N 143 DTY OXT HXT sing N N 144 GLN N CA sing N N 145 GLN N H sing N N 146 GLN N H2 sing N N 147 GLN CA C sing N N 148 GLN CA CB sing N N 149 GLN CA HA sing N N 150 GLN C O doub N N 151 GLN C OXT sing N N 152 GLN CB CG sing N N 153 GLN CB HB2 sing N N 154 GLN CB HB3 sing N N 155 GLN CG CD sing N N 156 GLN CG HG2 sing N N 157 GLN CG HG3 sing N N 158 GLN CD OE1 doub N N 159 GLN CD NE2 sing N N 160 GLN NE2 HE21 sing N N 161 GLN NE2 HE22 sing N N 162 GLN OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 SER N CA sing N N 173 SER N H sing N N 174 SER N H2 sing N N 175 SER CA C sing N N 176 SER CA CB sing N N 177 SER CA HA sing N N 178 SER C O doub N N 179 SER C OXT sing N N 180 SER CB OG sing N N 181 SER CB HB2 sing N N 182 SER CB HB3 sing N N 183 SER OG HG sing N N 184 SER OXT HXT sing N N 185 THR N CA sing N N 186 THR N H sing N N 187 THR N H2 sing N N 188 THR CA C sing N N 189 THR CA CB sing N N 190 THR CA HA sing N N 191 THR C O doub N N 192 THR C OXT sing N N 193 THR CB OG1 sing N N 194 THR CB CG2 sing N N 195 THR CB HB sing N N 196 THR OG1 HG1 sing N N 197 THR CG2 HG21 sing N N 198 THR CG2 HG22 sing N N 199 THR CG2 HG23 sing N N 200 THR OXT HXT sing N N 201 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 # _atom_sites.entry_id 2IH0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_