HEADER TRANSFERASE/DNA 25-SEP-06 2IH5 TITLE CRYSTAL STRUCTURE OF THE ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI TITLE 2 COMPLEXED WITH THE COFACTOR ANALOG AETA AND A 10 BP DNA CONTAINING AN TITLE 3 ABASIC SITE ANALOG AT THE TARGET BASE PARTNER POSITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DNA TARGET STRAND; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*GP*AP*CP*AP*(3DR)P*CP*GP*(6MA)P*AP*C)-3'; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: DNA PARTNER STRAND CONTAINING N6-METHYLADENINE AND AN COMPND 11 ABASIC SITE ANALOG AT THE TARGET BASE PARTNER POSITION; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: MODIFICATION METHYLASE TAQI; COMPND 14 CHAIN: A; COMPND 15 SYNONYM: ADENINE-SPECIFIC METHYLTRANSFERASE TAQI, M.TAQI; COMPND 16 EC: 2.1.1.72; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SOLID-PHASE DNA SYNTHESIS; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SOLID-PHASE DNA SYNTHESIS; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 9 ORGANISM_TAXID: 271; SOURCE 10 STRAIN: YT1; SOURCE 11 GENE: TAQIM; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: ER2267; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PA1/MTAQ-A49A KEYWDS DNA, DNA METHYLTRANSFERASE, TARGET BASE PARTNER, ABASIC SITE ANALOG, KEYWDS 2 BASE FLIPPING, NUCLEOTIDE FLIPPING, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.LENZ,A.J.SCHEIDIG,E.WEINHOLD REVDAT 5 30-AUG-23 2IH5 1 REMARK LINK REVDAT 4 18-OCT-17 2IH5 1 REMARK REVDAT 3 13-JUL-11 2IH5 1 VERSN REVDAT 2 24-FEB-09 2IH5 1 VERSN REVDAT 1 13-NOV-07 2IH5 0 JRNL AUTH T.LENZ,A.J.SCHEIDIG,E.WEINHOLD JRNL TITL INFLUENCE OF THE TARGET BASE PARTNER ON THE METHYLATION RATE JRNL TITL 2 OF THE ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.GOEDECKE,M.PIGNOT,R.S.GOODY,A.J.SCHEIDIG,E.WEINHOLD REMARK 1 TITL STRUCTURE OF THE N6-ADENINE DNA METHYLTRANSFERASE M.TAQI IN REMARK 1 TITL 2 COMPLEX WITH DNA AND A COFACTOR ANALOG REMARK 1 REF NAT.STRUCT.BIOL. V. 8 121 2001 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.SCHLUCKEBIER,M.KOZAK,N.BLEIMLING,E.WEINHOLD,W.SAENGER REMARK 1 TITL DIFFERENTIAL BINDING OF S-ADENOSYLMETHIONINE, REMARK 1 TITL 2 S-ADENOSYLHOMOCYSTEINE AND SINEFUNGIN TO THE REMARK 1 TITL 3 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI REMARK 1 REF J.MOL.BIOL. V. 265 56 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 44043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2203 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2993 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3161 REMARK 3 NUCLEIC ACID ATOMS : 396 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 606 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.54000 REMARK 3 B22 (A**2) : 1.56000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.516 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3736 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5154 ; 1.479 ; 2.109 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 6.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;31.520 ;22.245 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;12.890 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;14.714 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2724 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1822 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2455 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 495 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.131 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2011 ; 0.892 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3151 ; 1.335 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2120 ; 1.982 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2003 ; 3.087 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9310 REMARK 200 MONOCHROMATOR : ID14-3 (MIRROR) REMARK 200 OPTICS : ID14-3 (MIRROR) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44043 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.310 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 12.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.37 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : 0.42700 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1G38 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 MICROLITERS CRYSTALLIZATION BUFFER REMARK 280 (10 MM TRIS/HCL, 300 MM NACL, PH 7.3) CONTAINING THE COMPLEX REMARK 280 PLUS 1 MICROLITER RESERVOIR SOLUTION (100 MM KCL, 100 MM MGCL2, REMARK 280 6% ISOPROPANOL, 50 MM SODIUM CACODYLATE, PH 6.0), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.94500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.18500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.81500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.18500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.94500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.81500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE INDEPENDENT BIOLOGICAL REMARK 300 ASSEMBLY CONSISTING OF M.TAQI, DNA AND COFACTOR ANALOG AETA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 ASN A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 LEU A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 PHE A 411 REMARK 465 HIS A 412 REMARK 465 THR A 413 REMARK 465 SER A 414 REMARK 465 PRO A 415 REMARK 465 GLU A 416 REMARK 465 SER A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 ASN A 420 REMARK 465 PHE A 421 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2292 O HOH A 2488 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 6 O4' - C1' - N9 ANGL. DEV. = -10.4 DEGREES REMARK 500 DT B 7 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT B 7 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT B 9 O4' - C1' - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC B 10 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DG C 17 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 20 O4' - C1' - N1 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 -111.77 53.12 REMARK 500 ASP A 78 72.92 -151.90 REMARK 500 LYS A 116 -32.25 -133.03 REMARK 500 TYR A 140 -158.32 57.62 REMARK 500 GLU A 355 166.02 92.63 REMARK 500 ARG A 389 -120.99 43.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NEA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G38 RELATED DB: PDB REMARK 900 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI/DNA/AETA COMPLEX REMARK 900 RELATED ID: 2ADM RELATED DB: PDB REMARK 900 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI/SAM COMPLEX REMARK 900 RELATED ID: 1AQI RELATED DB: PDB REMARK 900 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI/SAH COMPLEX REMARK 900 RELATED ID: 1AQJ RELATED DB: PDB REMARK 900 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI/SINEFUNGIN COMPLEX REMARK 900 RELATED ID: 2IBS RELATED DB: PDB REMARK 900 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI/2PR-DNA/AETA COMPLEX REMARK 900 RELATED ID: 2IBT RELATED DB: PDB REMARK 900 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI/2PR-3DR-DNA/AETA REMARK 900 COMPLEX REMARK 900 RELATED ID: 2IH2 RELATED DB: PDB REMARK 900 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI/5PY-DNA/AETA COMPLEX REMARK 900 RELATED ID: 2IH4 RELATED DB: PDB REMARK 900 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.TAQI/4PC-DNA/AETA COMPLEX DBREF 2IH5 A 1 421 UNP P14385 MTTA_THEAQ 1 421 DBREF 2IH5 B 1 10 PDB 2IH5 2IH5 1 10 DBREF 2IH5 C 11 20 PDB 2IH5 2IH5 11 20 SEQRES 1 B 10 DG DT DT DC DG DA DT DG DT DC SEQRES 1 C 10 DG DA DC DA 3DR DC DG 6MA DA DC SEQRES 1 A 421 MET GLY LEU PRO PRO LEU LEU SER LEU PRO SER ASN SER SEQRES 2 A 421 ALA PRO ARG SER LEU GLY ARG VAL GLU THR PRO PRO GLU SEQRES 3 A 421 VAL VAL ASP PHE MET VAL SER LEU ALA GLU ALA PRO ARG SEQRES 4 A 421 GLY GLY ARG VAL LEU GLU PRO ALA CYS ALA HIS GLY PRO SEQRES 5 A 421 PHE LEU ARG ALA PHE ARG GLU ALA HIS GLY THR ALA TYR SEQRES 6 A 421 ARG PHE VAL GLY VAL GLU ILE ASP PRO LYS ALA LEU ASP SEQRES 7 A 421 LEU PRO PRO TRP ALA GLU GLY ILE LEU ALA ASP PHE LEU SEQRES 8 A 421 LEU TRP GLU PRO GLY GLU ALA PHE ASP LEU ILE LEU GLY SEQRES 9 A 421 ASN PRO PRO TYR GLY ILE VAL GLY GLU ALA SER LYS TYR SEQRES 10 A 421 PRO ILE HIS VAL PHE LYS ALA VAL LYS ASP LEU TYR LYS SEQRES 11 A 421 LYS ALA PHE SER THR TRP LYS GLY LYS TYR ASN LEU TYR SEQRES 12 A 421 GLY ALA PHE LEU GLU LYS ALA VAL ARG LEU LEU LYS PRO SEQRES 13 A 421 GLY GLY VAL LEU VAL PHE VAL VAL PRO ALA THR TRP LEU SEQRES 14 A 421 VAL LEU GLU ASP PHE ALA LEU LEU ARG GLU PHE LEU ALA SEQRES 15 A 421 ARG GLU GLY LYS THR SER VAL TYR TYR LEU GLY GLU VAL SEQRES 16 A 421 PHE PRO GLN LYS LYS VAL SER ALA VAL VAL ILE ARG PHE SEQRES 17 A 421 GLN LYS SER GLY LYS GLY LEU SER LEU TRP ASP THR GLN SEQRES 18 A 421 GLU SER GLU SER GLY PHE THR PRO ILE LEU TRP ALA GLU SEQRES 19 A 421 TYR PRO HIS TRP GLU GLY GLU ILE ILE ARG PHE GLU THR SEQRES 20 A 421 GLU GLU THR ARG LYS LEU GLU ILE SER GLY MET PRO LEU SEQRES 21 A 421 GLY ASP LEU PHE HIS ILE ARG PHE ALA ALA ARG SER PRO SEQRES 22 A 421 GLU PHE LYS LYS HIS PRO ALA VAL ARG LYS GLU PRO GLY SEQRES 23 A 421 PRO GLY LEU VAL PRO VAL LEU THR GLY ARG ASN LEU LYS SEQRES 24 A 421 PRO GLY TRP VAL ASP TYR GLU LYS ASN HIS SER GLY LEU SEQRES 25 A 421 TRP MET PRO LYS GLU ARG ALA LYS GLU LEU ARG ASP PHE SEQRES 26 A 421 TYR ALA THR PRO HIS LEU VAL VAL ALA HIS THR LYS GLY SEQRES 27 A 421 THR ARG VAL VAL ALA ALA TRP ASP GLU ARG ALA TYR PRO SEQRES 28 A 421 TRP ARG GLU GLU PHE HIS LEU LEU PRO LYS GLU GLY VAL SEQRES 29 A 421 ARG LEU ASP PRO SER SER LEU VAL GLN TRP LEU ASN SER SEQRES 30 A 421 GLU ALA MET GLN LYS HIS VAL ARG THR LEU TYR ARG ASP SEQRES 31 A 421 PHE VAL PRO HIS LEU THR LEU ARG MET LEU GLU ARG LEU SEQRES 32 A 421 PRO VAL ARG ARG GLU TYR GLY PHE HIS THR SER PRO GLU SEQRES 33 A 421 SER ALA ARG ASN PHE MODRES 2IH5 6MA C 18 A HET 3DR C 15 11 HET 6MA C 18 22 HET NEA A1001 22 HET GOL A2001 6 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM 6MA N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE HETNAM NEA 5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE HETNAM GOL GLYCEROL HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 3DR C5 H11 O6 P FORMUL 2 6MA C11 H16 N5 O6 P FORMUL 4 NEA C12 H18 N6 O3 S FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *606(H2 O) HELIX 1 1 PRO A 24 LEU A 34 1 11 HELIX 2 2 GLY A 51 GLY A 62 1 12 HELIX 3 3 ASP A 89 TRP A 93 5 5 HELIX 4 4 PHE A 122 PHE A 133 1 12 HELIX 5 5 ASN A 141 LEU A 153 1 13 HELIX 6 6 THR A 167 VAL A 170 5 4 HELIX 7 7 LEU A 171 ASP A 173 5 3 HELIX 8 8 PHE A 174 GLY A 185 1 12 HELIX 9 9 THR A 247 GLY A 257 1 11 HELIX 10 10 ARG A 271 LYS A 277 1 7 HELIX 11 11 THR A 294 ARG A 296 5 3 HELIX 12 12 PRO A 315 LEU A 322 5 8 HELIX 13 13 ARG A 323 THR A 328 5 6 HELIX 14 14 ASP A 367 ASN A 376 1 10 HELIX 15 15 SER A 377 ARG A 389 1 13 HELIX 16 16 THR A 396 ARG A 402 1 7 SHEET 1 A 9 ALA A 83 LEU A 87 0 SHEET 2 A 9 ARG A 66 GLU A 71 1 N PHE A 67 O GLU A 84 SHEET 3 A 9 ARG A 42 PRO A 46 1 N VAL A 43 O ARG A 66 SHEET 4 A 9 PHE A 99 GLY A 104 1 O LEU A 103 N LEU A 44 SHEET 5 A 9 LEU A 154 PRO A 165 1 O LYS A 155 N PHE A 99 SHEET 6 A 9 ALA A 203 GLN A 209 -1 O PHE A 208 N LEU A 160 SHEET 7 A 9 LYS A 186 GLY A 193 -1 N TYR A 190 O VAL A 205 SHEET 8 A 9 LEU A 215 SER A 223 1 O TRP A 218 N VAL A 189 SHEET 9 A 9 GLY A 226 TYR A 235 -1 O TYR A 235 N LEU A 215 SHEET 1 B 2 MET A 258 PRO A 259 0 SHEET 2 B 2 PRO A 404 VAL A 405 -1 O VAL A 405 N MET A 258 SHEET 1 C 4 PHE A 264 PHE A 268 0 SHEET 2 C 4 PHE A 356 PRO A 360 -1 O LEU A 359 N HIS A 265 SHEET 3 C 4 HIS A 330 VAL A 333 -1 N VAL A 333 O PHE A 356 SHEET 4 C 4 ALA A 343 ASP A 346 -1 O ALA A 344 N VAL A 332 SHEET 1 D 2 VAL A 290 PRO A 291 0 SHEET 2 D 2 TRP A 313 MET A 314 -1 O MET A 314 N VAL A 290 SHEET 1 E 2 LEU A 298 LYS A 299 0 SHEET 2 E 2 TRP A 302 VAL A 303 -1 O TRP A 302 N LYS A 299 LINK O3' DA C 14 P 3DR C 15 1555 1555 1.60 LINK O3' 3DR C 15 P DC C 16 1555 1555 1.59 LINK O3' DG C 17 P 6MA C 18 1555 1555 1.59 LINK O3' 6MA C 18 P DA C 19 1555 1555 1.59 SITE 1 AC1 16 ALA A 47 GLU A 71 ILE A 72 ASP A 73 SITE 2 AC1 16 ALA A 88 ASP A 89 PHE A 90 ASN A 105 SITE 3 AC1 16 PRO A 107 PHE A 146 GOL A2001 HOH A2055 SITE 4 AC1 16 HOH A2091 HOH A2116 HOH A2171 HOH A2222 SITE 1 AC2 6 ILE A 119 VAL A 121 TYR A 129 LEU A 142 SITE 2 AC2 6 NEA A1001 HOH A2398 CRYST1 59.890 69.630 114.370 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008744 0.00000