HEADER TRANSFERASE 29-SEP-06 2IJ9 TITLE CRYSTAL STRUCTURE OF URIDYLATE KINASE FROM ARCHAEOGLOBUS FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UK, URIDINE MONOPHOSPHATE KINASE, UMP KINASE, PUTATIVE COMPND 5 DEHYDRATASE PROTEIN; COMPND 6 EC: 2.7.4.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 GENE: PYRH, AF_2042; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS KINASE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 2 NYSGXRC, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS KEYWDS 3 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.CHEN,L.J.KEEFE,J.M.SAUDER,M.DICKEY,J.M.ADAMS,S.OZYURT, AUTHOR 2 S.R.WASSERMAN,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 30-AUG-23 2IJ9 1 REMARK REVDAT 6 20-OCT-21 2IJ9 1 SEQADV REVDAT 5 03-FEB-21 2IJ9 1 AUTHOR JRNL REMARK REVDAT 4 14-NOV-18 2IJ9 1 AUTHOR REVDAT 3 13-JUL-11 2IJ9 1 VERSN REVDAT 2 24-FEB-09 2IJ9 1 VERSN REVDAT 1 17-OCT-06 2IJ9 0 JRNL AUTH Y.PATSKOVSKY,R.CHEN,L.J.KEEFE,J.M.SAUDER,M.DICKEY,J.M.ADAMS, JRNL AUTH 2 S.OZYURT,S.R.WASSERMAN,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF URIDYLATE KINASE FROM ARCHAEOGLOBUS JRNL TITL 2 FULGIDUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 17774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.284 REMARK 3 R VALUE (WORKING SET) : 0.283 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 595 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1127 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3224 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.73000 REMARK 3 B22 (A**2) : 2.73000 REMARK 3 B33 (A**2) : -5.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.690 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.420 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.362 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.894 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.834 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3268 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4418 ; 1.377 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 7.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;35.073 ;24.828 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;19.465 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 544 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2326 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1760 ; 0.208 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2282 ; 0.317 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.173 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.172 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.160 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2176 ; 8.564 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3434 ;12.320 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1192 ;17.963 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 984 ;24.823 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 142 1 REMARK 3 1 B 1 B 142 1 REMARK 3 2 A 153 A 168 1 REMARK 3 2 B 153 B 168 1 REMARK 3 3 A 179 A 219 1 REMARK 3 3 B 179 B 219 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1502 ; 0.04 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1502 ; 2.26 ; 3.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 0.90 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23600 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : 0.78000 REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE, PH 4.5, 3.5M REMARK 280 AMMONIUM SULFATE, 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.33600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.00400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.66800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.33600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.66800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 140.00400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -46.66800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 170 REMARK 465 SER A 171 REMARK 465 ALA A 172 REMARK 465 LYS A 173 REMARK 465 ALA A 174 REMARK 465 ALA B 172 REMARK 465 LYS B 173 REMARK 465 ALA B 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 -38.74 103.91 REMARK 500 LEU A 12 34.42 -167.09 REMARK 500 SER A 13 89.02 -51.27 REMARK 500 THR A 110 -90.11 -131.06 REMARK 500 PRO A 112 80.28 -63.02 REMARK 500 THR A 116 -69.81 58.85 REMARK 500 LYS A 128 70.93 53.67 REMARK 500 ASP A 145 76.59 68.28 REMARK 500 PRO A 146 -134.29 -92.48 REMARK 500 LYS A 147 -175.41 67.57 REMARK 500 THR A 176 -104.97 -141.79 REMARK 500 ILE A 180 128.39 23.38 REMARK 500 SER B 10 -38.78 101.50 REMARK 500 LEU B 12 36.46 -167.87 REMARK 500 SER B 13 90.25 -53.48 REMARK 500 ASN B 33 -166.96 -125.42 REMARK 500 THR B 110 -86.25 -127.36 REMARK 500 PRO B 112 80.80 -60.87 REMARK 500 THR B 116 -66.60 52.82 REMARK 500 LYS B 128 72.06 51.72 REMARK 500 SER B 143 -146.39 -69.11 REMARK 500 ASP B 145 -66.00 105.56 REMARK 500 SER B 170 -110.58 -170.06 REMARK 500 ASN B 177 37.85 -68.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 178 VAL A 179 -32.47 REMARK 500 VAL A 179 ILE A 180 -129.82 REMARK 500 VAL B 179 ILE B 180 -49.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T1985 RELATED DB: TARGETDB DBREF 2IJ9 A 1 219 UNP O28237 PYRH_ARCFU 1 219 DBREF 2IJ9 B 1 219 UNP O28237 PYRH_ARCFU 1 219 SEQADV 2IJ9 SER A 51 UNP O28237 ARG 51 ENGINEERED MUTATION SEQADV 2IJ9 SER B 51 UNP O28237 ARG 51 ENGINEERED MUTATION SEQRES 1 A 219 MET LYS VAL VAL LEU SER LEU GLY GLY SER VAL LEU SER SEQRES 2 A 219 ASN GLU SER GLU LYS ILE ARG GLU PHE ALA LYS THR ILE SEQRES 3 A 219 GLU SER VAL ALA GLN GLN ASN GLN VAL PHE VAL VAL VAL SEQRES 4 A 219 GLY GLY GLY LYS LEU ALA ARG GLU TYR ILE LYS SER ALA SEQRES 5 A 219 ARG GLU LEU GLY ALA SER GLU THR PHE CYS ASP TYR ILE SEQRES 6 A 219 GLY ILE ALA ALA THR ARG LEU ASN ALA MET LEU LEU ILE SEQRES 7 A 219 SER ALA ILE PRO SER ALA ALA LYS LYS VAL PRO VAL ASP SEQRES 8 A 219 PHE MET GLU ALA GLU GLU LEU SER LYS LEU TYR ARG VAL SEQRES 9 A 219 VAL VAL MET GLY GLY THR PHE PRO GLY HIS THR THR ASP SEQRES 10 A 219 ALA THR ALA ALA LEU LEU ALA GLU PHE ILE LYS ALA ASP SEQRES 11 A 219 VAL PHE ILE ASN ALA THR ASN VAL ASP GLY VAL TYR SER SEQRES 12 A 219 ALA ASP PRO LYS SER ASP THR SER ALA VAL LYS TYR ASP SEQRES 13 A 219 ARG LEU SER PRO GLN GLN LEU VAL GLU ILE VAL SER ARG SEQRES 14 A 219 SER SER ALA LYS ALA GLY THR ASN VAL VAL ILE ASP LEU SEQRES 15 A 219 LEU ALA ALA LYS ILE ILE GLU ARG SER LYS ILE LYS THR SEQRES 16 A 219 TYR VAL ILE LEU GLY THR PRO GLU ASN ILE MET LYS ALA SEQRES 17 A 219 VAL LYS GLY GLU ALA VAL GLY THR VAL ILE ALA SEQRES 1 B 219 MET LYS VAL VAL LEU SER LEU GLY GLY SER VAL LEU SER SEQRES 2 B 219 ASN GLU SER GLU LYS ILE ARG GLU PHE ALA LYS THR ILE SEQRES 3 B 219 GLU SER VAL ALA GLN GLN ASN GLN VAL PHE VAL VAL VAL SEQRES 4 B 219 GLY GLY GLY LYS LEU ALA ARG GLU TYR ILE LYS SER ALA SEQRES 5 B 219 ARG GLU LEU GLY ALA SER GLU THR PHE CYS ASP TYR ILE SEQRES 6 B 219 GLY ILE ALA ALA THR ARG LEU ASN ALA MET LEU LEU ILE SEQRES 7 B 219 SER ALA ILE PRO SER ALA ALA LYS LYS VAL PRO VAL ASP SEQRES 8 B 219 PHE MET GLU ALA GLU GLU LEU SER LYS LEU TYR ARG VAL SEQRES 9 B 219 VAL VAL MET GLY GLY THR PHE PRO GLY HIS THR THR ASP SEQRES 10 B 219 ALA THR ALA ALA LEU LEU ALA GLU PHE ILE LYS ALA ASP SEQRES 11 B 219 VAL PHE ILE ASN ALA THR ASN VAL ASP GLY VAL TYR SER SEQRES 12 B 219 ALA ASP PRO LYS SER ASP THR SER ALA VAL LYS TYR ASP SEQRES 13 B 219 ARG LEU SER PRO GLN GLN LEU VAL GLU ILE VAL SER ARG SEQRES 14 B 219 SER SER ALA LYS ALA GLY THR ASN VAL VAL ILE ASP LEU SEQRES 15 B 219 LEU ALA ALA LYS ILE ILE GLU ARG SER LYS ILE LYS THR SEQRES 16 B 219 TYR VAL ILE LEU GLY THR PRO GLU ASN ILE MET LYS ALA SEQRES 17 B 219 VAL LYS GLY GLU ALA VAL GLY THR VAL ILE ALA HET SO4 A 301 5 HET SO4 B 302 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) HELIX 1 1 GLU A 15 ASN A 33 1 19 HELIX 2 2 GLY A 41 LEU A 55 1 15 HELIX 3 3 SER A 58 ILE A 81 1 24 HELIX 4 4 ASP A 91 LYS A 100 1 10 HELIX 5 5 THR A 116 ILE A 127 1 12 HELIX 6 6 SER A 159 VAL A 167 1 9 HELIX 7 7 ASP A 181 LYS A 192 1 12 HELIX 8 8 THR A 201 LYS A 210 1 10 HELIX 9 9 GLU B 15 ASN B 33 1 19 HELIX 10 10 GLY B 41 LEU B 55 1 15 HELIX 11 11 SER B 58 ILE B 81 1 24 HELIX 12 12 ASP B 91 LYS B 100 1 10 HELIX 13 13 THR B 116 ILE B 127 1 12 HELIX 14 14 SER B 159 VAL B 167 1 9 HELIX 15 15 ASP B 181 LYS B 192 1 12 HELIX 16 16 THR B 201 LYS B 210 1 10 SHEET 1 A 7 VAL A 104 MET A 107 0 SHEET 2 A 7 GLN A 34 VAL A 39 1 N VAL A 37 O MET A 107 SHEET 3 A 7 LYS A 2 LEU A 7 1 N VAL A 3 O PHE A 36 SHEET 4 A 7 VAL A 131 THR A 136 1 O ILE A 133 N VAL A 4 SHEET 5 A 7 THR A 195 LEU A 199 1 O ILE A 198 N THR A 136 SHEET 6 A 7 THR A 216 ILE A 218 -1 O ILE A 218 N THR A 195 SHEET 7 A 7 ARG A 157 LEU A 158 1 N LEU A 158 O VAL A 217 SHEET 1 B 7 VAL B 104 MET B 107 0 SHEET 2 B 7 GLN B 34 VAL B 39 1 N VAL B 37 O MET B 107 SHEET 3 B 7 LYS B 2 LEU B 7 1 N VAL B 3 O PHE B 36 SHEET 4 B 7 VAL B 131 THR B 136 1 O ILE B 133 N VAL B 4 SHEET 5 B 7 THR B 195 LEU B 199 1 O ILE B 198 N THR B 136 SHEET 6 B 7 THR B 216 ILE B 218 -1 O ILE B 218 N THR B 195 SHEET 7 B 7 ARG B 157 LEU B 158 1 N LEU B 158 O VAL B 217 CISPEP 1 SER A 168 ARG A 169 0 -10.49 CISPEP 2 GLY A 175 THR A 176 0 0.66 CISPEP 3 ASP B 145 PRO B 146 0 -18.17 SITE 1 AC1 6 GLY A 8 GLY A 9 GLY A 40 GLY A 41 SITE 2 AC1 6 ARG A 46 THR A 116 SITE 1 AC2 7 GLY B 8 GLY B 9 GLY B 40 GLY B 41 SITE 2 AC2 7 GLY B 42 ARG B 46 THR B 116 CRYST1 94.277 94.277 186.672 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010607 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005357 0.00000