HEADER TRANSCRIPTION 29-SEP-06 2IJL TITLE THE STRUCTURE OF A PUTATIVE MODE FROM AGROBACTERIUM TUMEFACIENS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDENUM-BINDING TRANSCRIPTIONAL REPRESSOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AGR_C_4647P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: MODE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS MOLYBDENUM-BINDING, TRANSCRIPTIONAL REPRESSOR, STRUCTURAL GENOMICS, KEYWDS 2 DNA-BINDING PROTEIN, AGROBACTERIUM TUMEFACIENS, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 4 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,E.EVDOKIMOVA,M.KUDRITSKA,A.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 30-OCT-24 2IJL 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2IJL 1 VERSN REVDAT 3 24-FEB-09 2IJL 1 VERSN REVDAT 2 14-NOV-06 2IJL 1 AUTHOR JRNL REVDAT 1 31-OCT-06 2IJL 0 JRNL AUTH M.E.CUFF,E.EVDOKIMOVA,M.KUDRITSKA,A.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL THE STRUCTURE OF A PUTATIVE MODE FROM AGROBACTERIUM JRNL TITL 2 TUMEFACIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 10719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 534 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 532 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1746 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.23000 REMARK 3 B22 (A**2) : -2.11000 REMARK 3 B33 (A**2) : 0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1826 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2448 ; 1.480 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 215 ; 6.031 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;33.397 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;17.872 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.392 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 254 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1355 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 792 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1222 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 86 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.365 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1126 ; 1.730 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1727 ; 1.677 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 786 ; 3.118 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 721 ; 4.469 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0311 56.7685 14.3481 REMARK 3 T TENSOR REMARK 3 T11: -0.0126 T22: -0.0434 REMARK 3 T33: 0.1282 T12: -0.0226 REMARK 3 T13: 0.2006 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 2.4577 L22: 5.3183 REMARK 3 L33: 14.9652 L12: -0.3647 REMARK 3 L13: 1.6115 L23: -5.2471 REMARK 3 S TENSOR REMARK 3 S11: 0.2180 S12: 0.0830 S13: 0.3001 REMARK 3 S21: 0.2481 S22: 0.2269 S23: -0.0543 REMARK 3 S31: -0.6935 S32: 0.3455 S33: -0.4449 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5542 55.6868 27.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.1143 REMARK 3 T33: 0.1224 T12: 0.0133 REMARK 3 T13: -0.0093 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 3.3748 L22: 4.2690 REMARK 3 L33: 5.7621 L12: 2.6864 REMARK 3 L13: -1.0215 L23: -0.0970 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: -0.3986 S13: -0.3248 REMARK 3 S21: 0.5065 S22: -0.1541 S23: -0.4950 REMARK 3 S31: 0.0371 S32: 0.5890 S33: 0.1127 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9766 53.2624 4.8377 REMARK 3 T TENSOR REMARK 3 T11: 0.2205 T22: 0.1352 REMARK 3 T33: 0.1279 T12: -0.0460 REMARK 3 T13: 0.2061 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 5.6836 L22: 5.8679 REMARK 3 L33: 8.1106 L12: -4.2438 REMARK 3 L13: 6.1087 L23: -6.5321 REMARK 3 S TENSOR REMARK 3 S11: -0.1253 S12: 0.9660 S13: -0.1222 REMARK 3 S21: -0.4826 S22: -0.1881 S23: -0.3908 REMARK 3 S31: 0.4256 S32: 0.6019 S33: 0.3134 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 28 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8712 57.9885 14.7803 REMARK 3 T TENSOR REMARK 3 T11: -0.1178 T22: -0.1191 REMARK 3 T33: -0.1493 T12: -0.0953 REMARK 3 T13: 0.1296 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 3.3360 L22: 7.5371 REMARK 3 L33: 2.0104 L12: -2.7971 REMARK 3 L13: 1.9730 L23: 0.4384 REMARK 3 S TENSOR REMARK 3 S11: -0.1237 S12: -0.1019 S13: -0.2510 REMARK 3 S21: 0.3323 S22: 0.2896 S23: 0.2939 REMARK 3 S31: -0.4500 S32: -0.0249 S33: -0.1659 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6804 68.4291 10.7310 REMARK 3 T TENSOR REMARK 3 T11: -0.0024 T22: -0.0452 REMARK 3 T33: -0.0328 T12: -0.0195 REMARK 3 T13: 0.0168 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 4.6601 L22: 2.8246 REMARK 3 L33: 10.2420 L12: -0.6602 REMARK 3 L13: -4.8965 L23: 2.9100 REMARK 3 S TENSOR REMARK 3 S11: -0.2020 S12: -0.0086 S13: 0.4072 REMARK 3 S21: -0.2480 S22: 0.2649 S23: 0.4034 REMARK 3 S31: -0.5473 S32: -0.0538 S33: -0.0629 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8323 49.3552 13.4851 REMARK 3 T TENSOR REMARK 3 T11: 0.0151 T22: -0.1850 REMARK 3 T33: -0.0371 T12: -0.1110 REMARK 3 T13: 0.1669 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 6.1394 L22: 5.3757 REMARK 3 L33: 4.5926 L12: -2.9981 REMARK 3 L13: 3.0397 L23: -2.6440 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.0029 S13: -0.4668 REMARK 3 S21: -0.3828 S22: 0.1479 S23: 0.0706 REMARK 3 S31: 0.5018 S32: -0.3448 S33: -0.1222 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945, 0.97929 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10719 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELX, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LISO4, 0.1M BIS-TRIS PH 5.5, 25% REMARK 280 PEG3350 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.76800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 74 REMARK 465 GLY A 75 REMARK 465 LYS A 76 REMARK 465 GLN A 77 REMARK 465 GLY A 78 REMARK 465 GLY A 79 REMARK 465 ASP A 120 REMARK 465 ALA A 121 REMARK 465 LEU A 122 REMARK 465 ASN A 123 REMARK 465 ARG A 124 REMARK 465 ASP A 125 REMARK 465 ARG A 126 REMARK 465 GLU A 127 REMARK 465 PRO A 128 REMARK 465 PRO A 129 REMARK 465 THR A 130 REMARK 465 LEU A 131 REMARK 465 GLY A 132 REMARK 465 SER A 133 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 ARG B 73 REMARK 465 GLY B 74 REMARK 465 GLY B 75 REMARK 465 LYS B 76 REMARK 465 GLN B 77 REMARK 465 GLY B 78 REMARK 465 ASP B 120 REMARK 465 ALA B 121 REMARK 465 LEU B 122 REMARK 465 ASN B 123 REMARK 465 ARG B 124 REMARK 465 ASP B 125 REMARK 465 ARG B 126 REMARK 465 GLU B 127 REMARK 465 PRO B 128 REMARK 465 PRO B 129 REMARK 465 THR B 130 REMARK 465 LEU B 131 REMARK 465 GLY B 132 REMARK 465 SER B 133 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 52 N CA C O CB CG CD REMARK 480 ARG A 52 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 52 O HOH B 332 2.03 REMARK 500 NH2 ARG B 52 O HOH B 332 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 16 79.53 -115.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5907 RELATED DB: TARGETDB DBREF 2IJL A 1 131 UNP Q8UCD4 Q8UCD4_AGRT5 1 131 DBREF 2IJL B 1 131 UNP Q8UCD4 Q8UCD4_AGRT5 1 131 SEQADV 2IJL GLY A -1 UNP Q8UCD4 CLONING ARTIFACT SEQADV 2IJL HIS A 0 UNP Q8UCD4 CLONING ARTIFACT SEQADV 2IJL MSE A 1 UNP Q8UCD4 MET 1 MODIFIED RESIDUE SEQADV 2IJL MSE A 30 UNP Q8UCD4 MET 30 MODIFIED RESIDUE SEQADV 2IJL MSE A 46 UNP Q8UCD4 MET 46 MODIFIED RESIDUE SEQADV 2IJL MSE A 48 UNP Q8UCD4 MET 48 MODIFIED RESIDUE SEQADV 2IJL MSE A 63 UNP Q8UCD4 MET 63 MODIFIED RESIDUE SEQADV 2IJL MSE A 97 UNP Q8UCD4 MET 97 MODIFIED RESIDUE SEQADV 2IJL MSE A 101 UNP Q8UCD4 MET 101 MODIFIED RESIDUE SEQADV 2IJL GLY A 132 UNP Q8UCD4 CLONING ARTIFACT SEQADV 2IJL SER A 133 UNP Q8UCD4 CLONING ARTIFACT SEQADV 2IJL GLY B -1 UNP Q8UCD4 CLONING ARTIFACT SEQADV 2IJL HIS B 0 UNP Q8UCD4 CLONING ARTIFACT SEQADV 2IJL MSE B 1 UNP Q8UCD4 MET 1 MODIFIED RESIDUE SEQADV 2IJL MSE B 30 UNP Q8UCD4 MET 30 MODIFIED RESIDUE SEQADV 2IJL MSE B 46 UNP Q8UCD4 MET 46 MODIFIED RESIDUE SEQADV 2IJL MSE B 48 UNP Q8UCD4 MET 48 MODIFIED RESIDUE SEQADV 2IJL MSE B 63 UNP Q8UCD4 MET 63 MODIFIED RESIDUE SEQADV 2IJL MSE B 97 UNP Q8UCD4 MET 97 MODIFIED RESIDUE SEQADV 2IJL MSE B 101 UNP Q8UCD4 MET 101 MODIFIED RESIDUE SEQADV 2IJL GLY B 132 UNP Q8UCD4 CLONING ARTIFACT SEQADV 2IJL SER B 133 UNP Q8UCD4 CLONING ARTIFACT SEQRES 1 A 135 GLY HIS MSE SER GLU LYS ARG LEU PRO LEU LYS PRO VAL SEQRES 2 A 135 LEU ARG ILE ASP PHE PRO PRO GLY GLU ARG LEU GLY HIS SEQRES 3 A 135 GLY LYS VAL GLU LEU MSE GLN LEU ILE ALA GLU THR GLY SEQRES 4 A 135 SER ILE SER ALA ALA GLY ARG ALA MSE ASP MSE SER TYR SEQRES 5 A 135 ARG ARG ALA TRP LEU LEU VAL ASP ALA LEU ASN HIS MSE SEQRES 6 A 135 PHE ARG GLN PRO VAL ILE CYS SER GLN ARG GLY GLY LYS SEQRES 7 A 135 GLN GLY GLY GLY ALA ALA LEU THR VAL PHE GLY ALA GLU SEQRES 8 A 135 LEU LEU GLU ARG TYR ARG GLY MSE GLU GLU ARG MSE ASN SEQRES 9 A 135 GLU ALA LEU ARG GLU ASP ILE ASP TRP LEU GLU ALA ASN SEQRES 10 A 135 ARG ASN PRO GLN ASP ALA LEU ASN ARG ASP ARG GLU PRO SEQRES 11 A 135 PRO THR LEU GLY SER SEQRES 1 B 135 GLY HIS MSE SER GLU LYS ARG LEU PRO LEU LYS PRO VAL SEQRES 2 B 135 LEU ARG ILE ASP PHE PRO PRO GLY GLU ARG LEU GLY HIS SEQRES 3 B 135 GLY LYS VAL GLU LEU MSE GLN LEU ILE ALA GLU THR GLY SEQRES 4 B 135 SER ILE SER ALA ALA GLY ARG ALA MSE ASP MSE SER TYR SEQRES 5 B 135 ARG ARG ALA TRP LEU LEU VAL ASP ALA LEU ASN HIS MSE SEQRES 6 B 135 PHE ARG GLN PRO VAL ILE CYS SER GLN ARG GLY GLY LYS SEQRES 7 B 135 GLN GLY GLY GLY ALA ALA LEU THR VAL PHE GLY ALA GLU SEQRES 8 B 135 LEU LEU GLU ARG TYR ARG GLY MSE GLU GLU ARG MSE ASN SEQRES 9 B 135 GLU ALA LEU ARG GLU ASP ILE ASP TRP LEU GLU ALA ASN SEQRES 10 B 135 ARG ASN PRO GLN ASP ALA LEU ASN ARG ASP ARG GLU PRO SEQRES 11 B 135 PRO THR LEU GLY SER MODRES 2IJL MSE A 30 MET SELENOMETHIONINE MODRES 2IJL MSE A 46 MET SELENOMETHIONINE MODRES 2IJL MSE A 48 MET SELENOMETHIONINE MODRES 2IJL MSE A 63 MET SELENOMETHIONINE MODRES 2IJL MSE A 97 MET SELENOMETHIONINE MODRES 2IJL MSE A 101 MET SELENOMETHIONINE MODRES 2IJL MSE B 30 MET SELENOMETHIONINE MODRES 2IJL MSE B 46 MET SELENOMETHIONINE MODRES 2IJL MSE B 48 MET SELENOMETHIONINE MODRES 2IJL MSE B 63 MET SELENOMETHIONINE MODRES 2IJL MSE B 97 MET SELENOMETHIONINE MODRES 2IJL MSE B 101 MET SELENOMETHIONINE HET MSE A 30 8 HET MSE A 46 8 HET MSE A 48 8 HET MSE A 63 8 HET MSE A 97 8 HET MSE A 101 8 HET MSE B 30 8 HET MSE B 46 8 HET MSE B 48 8 HET MSE B 63 8 HET MSE B 97 8 HET MSE B 101 8 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 206 5 HET EDO A 302 4 HET EDO A 304 4 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 207 5 HET SO4 B 208 5 HET EDO B 301 4 HET EDO B 303 4 HET EDO B 305 4 HET EDO B 306 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 SO4 8(O4 S 2-) FORMUL 7 EDO 6(C2 H6 O2) FORMUL 17 HOH *106(H2 O) HELIX 1 1 GLY A 23 GLY A 37 1 15 HELIX 2 2 SER A 38 MSE A 46 1 9 HELIX 3 3 SER A 49 PHE A 64 1 16 HELIX 4 4 THR A 84 LEU A 105 1 22 HELIX 5 5 LEU A 105 ARG A 116 1 12 HELIX 6 6 GLY B 23 GLY B 37 1 15 HELIX 7 7 SER B 38 ASP B 47 1 10 HELIX 8 8 SER B 49 PHE B 64 1 16 HELIX 9 9 THR B 84 LEU B 105 1 22 HELIX 10 10 LEU B 105 ARG B 116 1 12 SHEET 1 A 4 GLU A 20 LEU A 22 0 SHEET 2 A 4 LYS A 9 PHE A 16 -1 N PHE A 16 O GLU A 20 SHEET 3 A 4 LYS B 9 PHE B 16 -1 O ASP B 15 N LYS A 9 SHEET 4 A 4 GLU B 20 LEU B 22 -1 O LEU B 22 N ILE B 14 SHEET 1 B 2 ILE A 69 SER A 71 0 SHEET 2 B 2 ALA A 81 LEU A 83 -1 O ALA A 82 N CYS A 70 SHEET 1 C 2 ILE B 69 SER B 71 0 SHEET 2 C 2 ALA B 81 LEU B 83 -1 O ALA B 82 N CYS B 70 LINK C LEU A 29 N MSE A 30 1555 1555 1.34 LINK C MSE A 30 N GLN A 31 1555 1555 1.33 LINK C ALA A 45 N MSE A 46 1555 1555 1.32 LINK C MSE A 46 N ASP A 47 1555 1555 1.33 LINK C ASP A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N SER A 49 1555 1555 1.32 LINK C HIS A 62 N MSE A 63 1555 1555 1.34 LINK C MSE A 63 N PHE A 64 1555 1555 1.32 LINK C GLY A 96 N MSE A 97 1555 1555 1.32 LINK C MSE A 97 N GLU A 98 1555 1555 1.34 LINK C ARG A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N ASN A 102 1555 1555 1.33 LINK C LEU B 29 N MSE B 30 1555 1555 1.33 LINK C MSE B 30 N GLN B 31 1555 1555 1.32 LINK C ALA B 45 N MSE B 46 1555 1555 1.32 LINK C MSE B 46 N ASP B 47 1555 1555 1.34 LINK C ASP B 47 N MSE B 48 1555 1555 1.32 LINK C MSE B 48 N SER B 49 1555 1555 1.33 LINK C HIS B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N PHE B 64 1555 1555 1.32 LINK C GLY B 96 N MSE B 97 1555 1555 1.32 LINK C MSE B 97 N GLU B 98 1555 1555 1.33 LINK C ARG B 100 N MSE B 101 1555 1555 1.32 LINK C MSE B 101 N ASN B 102 1555 1555 1.33 CISPEP 1 PRO A 17 PRO A 18 0 6.47 CISPEP 2 PRO B 17 PRO B 18 0 -3.40 SITE 1 AC1 6 ARG B 13 ARG B 21 GLY B 23 GLY B 25 SITE 2 AC1 6 LYS B 26 HOH B 363 SITE 1 AC2 7 ARG A 21 EDO A 302 VAL B 11 ARG B 13 SITE 2 AC2 7 HIS B 24 HOH B 321 HOH B 353 SITE 1 AC3 9 ARG A 13 ARG A 21 LEU A 22 GLY A 23 SITE 2 AC3 9 GLY A 25 LYS A 26 HOH A 323 HOH A 341 SITE 3 AC3 9 HOH A 345 SITE 1 AC4 6 ARG A 13 HIS A 24 EDO A 302 HOH A 309 SITE 2 AC4 6 HOH A 335 ARG B 21 SITE 1 AC5 4 SER A 49 ARG A 51 ARG A 52 HOH A 352 SITE 1 AC6 6 CYS A 70 SER A 71 GLU A 107 TRP A 111 SITE 2 AC6 6 HOH A 315 ARG B 93 SITE 1 AC7 6 SER B 38 ILE B 39 SER B 40 TYR B 50 SITE 2 AC7 6 GLY B 79 GLY B 80 SITE 1 AC8 4 ARG A 51 THR B 84 VAL B 85 HOH B 315 SITE 1 AC9 3 SER B 49 ARG B 51 ARG B 52 SITE 1 BC1 6 VAL A 11 ARG A 13 SO4 A 204 VAL B 11 SITE 2 BC1 6 ARG B 13 SO4 B 202 SITE 1 BC2 4 SER A 40 ARG A 44 ARG B 65 HOH B 348 SITE 1 BC3 2 ARG A 93 HOH A 318 SITE 1 BC4 2 TRP B 111 ASN B 115 SITE 1 BC5 1 GLU B 113 CRYST1 40.719 79.536 43.994 90.00 106.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024559 0.000000 0.007366 0.00000 SCALE2 0.000000 0.012573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023731 0.00000