HEADER TRANSCRIPTION REGULATOR, OXIDOREDUCTASE 03-OCT-06 2ILM TITLE FACTOR INHIBITING HIF-1 ALPHA D201A MUTANT IN COMPLEX WITH FE(II), TITLE 2 ALPHA-KETOGLUTARATE AND HIF-1 ALPHA 35MER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, FACTOR COMPND 5 INHIBITING HIF-1, FIH-1; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1 ALPHA; COMPND 11 CHAIN: S; COMPND 12 FRAGMENT: CTAD; COMPND 13 SYNONYM: HIF-1 ALPHA, HIF1 ALPHA, ARNT- INTERACTING PROTEIN, MEMBER COMPND 14 OF PAS PROTEIN 1, MOP1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE FRAGMENT OF HIF-1 ALPHA KEYWDS FIH, HIF, DSBH, OXYGENASE, TRANSCRIPTION, HYPOXIA, INHIBITOR 2- KEYWDS 2 OXOGLUTARATE, ASPARAGINYL HYDROXYLASE, TRANSCRIPTION REGULATOR, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 6 30-AUG-23 2ILM 1 REMARK REVDAT 5 20-OCT-21 2ILM 1 REMARK SEQADV REVDAT 4 13-JUL-11 2ILM 1 VERSN REVDAT 3 12-MAY-09 2ILM 1 JRNL REVDAT 2 24-FEB-09 2ILM 1 VERSN REVDAT 1 14-AUG-07 2ILM 0 JRNL AUTH K.S.HEWITSON,S.L.HOLMES,D.EHRISMANN,A.P.HARDY,R.CHOWDHURY, JRNL AUTH 2 C.J.SCHOFIELD,M.A.MCDONOUGH JRNL TITL EVIDENCE THAT TWO ENZYME-DERIVED HISTIDINE LIGANDS ARE JRNL TITL 2 SUFFICIENT FOR IRON BINDING AND CATALYSIS BY FACTOR JRNL TITL 3 INHIBITING HIF (FIH). JRNL REF J.BIOL.CHEM. V. 283 25971 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18611856 JRNL DOI 10.1074/JBC.M804999200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.ELKINS,K.S.HEWITSON,L.A.MCNEILL,J.F.SEIBEL, REMARK 1 AUTH 2 I.SCHLEMMINGER,C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL STRUCTURE OF FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR REMARK 1 TITL 2 (HIF) REVEALS MECHANISM OF OXIDATIVE MODIFICATION OF HIF-1 REMARK 1 TITL 3 ALPHA REMARK 1 REF J.BIOL.CHEM. V. 278 1802 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12446723 REMARK 1 DOI 10.1074/JBC.C200644200 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.A.MCDONOUGH,L.A.MCNEILL,M.TILLIET,C.A.PAPAMICAEL,Q.Y.CHEN, REMARK 1 AUTH 2 B.BANERJI,K.S.HEWITSON,C.J.SCHOFIELD REMARK 1 TITL SELECTIVE INHIBITION OF FACTOR INHIBITING HYPOXIA INDUCIBLE REMARK 1 TITL 2 FACTOR REMARK 1 REF J.AM.CHEM.SOC. V. 127 7680 2005 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 15913349 REMARK 1 DOI 10.1021/JA050841B REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 190630.800 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 24359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2410 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3208 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 345 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.71000 REMARK 3 B22 (A**2) : -3.71000 REMARK 3 B33 (A**2) : 7.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 109.3 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : GOL.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : 2OG.PAR REMARK 3 PARAMETER FILE 6 : BCT.PAR REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : GOL.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : 2OG.TOP REMARK 3 TOPOLOGY FILE 6 : BCT.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 BULK SOLVENT MODEL USED. THE BICARBONATE ION IS A PROVISIONAL REMARK 3 ASSIGNMENT BASED ON OBSERVED ELECTRON DENSITY. THIS MOLECULE WAS REMARK 3 NOT REMARK 3 CONFIRMED AS BEING PRESENT IN THE CRYSTALLIZATION SOLUTION. REMARK 4 REMARK 4 2ILM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : BENT + TOROIDAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25664 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.02900 REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46540 REMARK 200 R SYM FOR SHELL (I) : 0.39250 REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS WITH 1H2N REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: 1H2N REMARK 200 REMARK 200 REMARK: REJECTION CRITERIA AS REJECTION PROBABILITY, REJECTION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG400, REMARK 280 0.1M HEPES PH7.5 ARGON ATMOSPHERE, 14MG/ML PROTEIN WITH 1MM REMARK 280 FE(II)SO4, 1MM ALPHA-KETOGLUTARATE, 1MM HIF-1ALPHA PEPTIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.82000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.26550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.26550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.91000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.26550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.26550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.73000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.26550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.26550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.91000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.26550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.26550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.73000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.53100 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.53100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.82000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ARG A 305 REMARK 465 SER S 786 REMARK 465 MET S 787 REMARK 465 ASP S 788 REMARK 465 GLU S 789 REMARK 465 SER S 790 REMARK 465 GLY S 791 REMARK 465 LEU S 792 REMARK 465 PRO S 793 REMARK 465 CYS S 800 REMARK 465 GLU S 801 REMARK 465 VAL S 802 REMARK 465 ASN S 803 REMARK 465 ALA S 804 REMARK 465 PRO S 805 REMARK 465 ILE S 806 REMARK 465 GLN S 807 REMARK 465 GLY S 808 REMARK 465 SER S 809 REMARK 465 ARG S 810 REMARK 465 ASN S 811 REMARK 465 LEU S 812 REMARK 465 LEU S 813 REMARK 465 GLN S 814 REMARK 465 GLY S 815 REMARK 465 GLU S 816 REMARK 465 GLU S 817 REMARK 465 LEU S 818 REMARK 465 LEU S 819 REMARK 465 ARG S 820 REMARK 465 ALA S 821 REMARK 465 LEU S 822 REMARK 465 ASP S 823 REMARK 465 GLN S 824 REMARK 465 VAL S 825 REMARK 465 ASN S 826 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 9 CG1 CG2 REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ARG A 40 CD NE CZ NH1 NH2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 ASN A 87 OD1 ND2 REMARK 470 SER A 96 OG REMARK 470 MET A 108 CE REMARK 470 GLN A 112 CD OE1 NE2 REMARK 470 LYS A 115 CB CG CD CE NZ REMARK 470 ARG A 117 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN A 119 CB CG OD1 ND2 REMARK 470 ARG A 120 CZ NH1 NH2 REMARK 470 GLU A 130 CB CG CD OE1 OE2 REMARK 470 LYS A 131 CD CE NZ REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 ASP A 134 OD1 OD2 REMARK 470 ILE A 135 CB CG1 CG2 CD1 REMARK 470 GLN A 136 CB CG CD OE1 NE2 REMARK 470 GLN A 137 CB CG CD OE1 NE2 REMARK 470 ARG A 138 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 141 CB CG CD OE1 OE2 REMARK 470 LEU A 144 CD1 REMARK 470 LEU A 146 CD1 REMARK 470 LEU A 150 CD1 CD2 REMARK 470 ASP A 152 CB CG OD1 OD2 REMARK 470 ARG A 156 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 LYS A 172 CD CE NZ REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 298 CD CE NZ REMARK 470 LYS A 304 CB CG CD CE NZ REMARK 470 ILE A 306 CG1 CG2 CD1 REMARK 470 GLU A 307 CB CG CD OE1 OE2 REMARK 470 LYS A 311 CD CE NZ REMARK 470 ARG A 320 CD REMARK 470 GLU A 328 CD OE1 OE2 REMARK 470 LYS A 345 NZ REMARK 470 GLN S 794 CG CD OE1 NE2 REMARK 470 TYR S 798 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 347 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 82 26.97 -72.55 REMARK 500 GLU A 83 -11.93 -143.70 REMARK 500 ASN A 84 -6.89 -143.16 REMARK 500 PHE A 100 76.35 -104.99 REMARK 500 ASN A 113 25.92 -71.94 REMARK 500 GLU A 121 109.45 -162.97 REMARK 500 ASN A 151 -169.46 -101.94 REMARK 500 GLU A 192 150.65 -49.71 REMARK 500 ASP A 222 6.41 -64.71 REMARK 500 ARG A 238 -6.68 84.39 REMARK 500 PRO A 267 117.17 -38.51 REMARK 500 TYR A 276 -10.76 81.62 REMARK 500 PRO A 303 162.66 -47.21 REMARK 500 LEU S 795 -21.86 72.07 REMARK 500 TYR S 798 -156.12 -94.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 350 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 HIS A 279 NE2 80.6 REMARK 620 3 AKG A1351 O2 162.7 90.4 REMARK 620 4 AKG A1351 O5 87.2 104.0 80.6 REMARK 620 5 BCT A3000 O2 95.0 96.0 100.7 160.0 REMARK 620 6 BCT A3000 O1 83.8 145.3 111.3 106.0 54.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H2K RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2L RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2N RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH AKG REMARK 900 RELATED ID: 1H2M RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1YCI RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH N-(CARBOXYCARBONYL)-D- REMARK 900 PHENYLALANINE DBREF 2ILM A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 DBREF 2ILM S 786 826 UNP Q16665 HIF1A_HUMAN 786 826 SEQADV 2ILM ALA A 201 UNP Q9NWT6 ASP 201 ENGINEERED MUTATION SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ALA GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 S 41 SER MET ASP GLU SER GLY LEU PRO GLN LEU THR SER TYR SEQRES 2 S 41 ASP CYS GLU VAL ASN ALA PRO ILE GLN GLY SER ARG ASN SEQRES 3 S 41 LEU LEU GLN GLY GLU GLU LEU LEU ARG ALA LEU ASP GLN SEQRES 4 S 41 VAL ASN HET FE2 A 350 1 HET SO4 A1352 5 HET SO4 A1353 5 HET BCT A3000 4 HET AKG A1351 10 HET GOL A2001 6 HET GOL A2002 6 HET GOL A2003 6 HETNAM FE2 FE (II) ION HETNAM SO4 SULFATE ION HETNAM BCT BICARBONATE ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FE2 FE 2+ FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 BCT C H O3 1- FORMUL 7 AKG C5 H6 O5 FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 HOH *175(H2 O) HELIX 1 1 ASP A 28 LEU A 32 5 5 HELIX 2 2 ASP A 49 ASN A 58 1 10 HELIX 3 3 VAL A 70 TRP A 76 5 7 HELIX 4 4 ASP A 77 GLN A 82 1 6 HELIX 5 5 ASP A 104 MET A 108 5 5 HELIX 6 6 LYS A 124 ARG A 138 1 15 HELIX 7 7 GLY A 155 GLY A 164 1 10 HELIX 8 8 ASN A 166 ARG A 177 1 12 HELIX 9 9 PRO A 220 ASP A 222 5 3 HELIX 10 10 GLN A 223 TYR A 228 1 6 HELIX 11 11 PHE A 252 VAL A 258 5 7 HELIX 12 12 LYS A 311 LEU A 330 1 20 HELIX 13 13 ASN A 332 GLN A 334 5 3 HELIX 14 14 GLU A 335 LYS A 345 1 11 SHEET 1 A 5 THR A 39 PRO A 41 0 SHEET 2 A 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 A 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 A 5 TRP A 278 SER A 283 -1 O GLU A 282 N ARG A 215 SHEET 5 A 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 B 8 ARG A 44 LEU A 45 0 SHEET 2 B 8 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 B 8 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 B 8 GLN A 203 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 B 8 THR A 290 LYS A 298 -1 O ILE A 291 N LYS A 211 SHEET 6 B 8 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 B 8 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 B 8 VAL A 92 ALA A 95 -1 N TYR A 93 O TYR A 145 LINK NE2 HIS A 199 FE FE2 A 350 1555 1555 2.26 LINK NE2 HIS A 279 FE FE2 A 350 1555 1555 2.28 LINK FE FE2 A 350 O2 AKG A1351 1555 1555 2.20 LINK FE FE2 A 350 O5 AKG A1351 1555 1555 2.06 LINK FE FE2 A 350 O2 BCT A3000 1555 1555 2.41 LINK FE FE2 A 350 O1 BCT A3000 1555 1555 2.56 CISPEP 1 TYR A 308 PRO A 309 0 0.09 SITE 1 AC1 4 HIS A 199 HIS A 279 AKG A1351 BCT A3000 SITE 1 AC2 3 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC3 5 LYS A 107 ASP A 237 ARG A 320 HOH A1093 SITE 2 AC3 5 HOH A1172 SITE 1 AC4 7 HIS A 199 ALA A 201 ARG A 238 HIS A 279 SITE 2 AC4 7 TRP A 296 FE2 A 350 AKG A1351 SITE 1 AC5 14 TYR A 145 LEU A 188 THR A 196 HIS A 199 SITE 2 AC5 14 ASN A 205 PHE A 207 LYS A 214 HIS A 279 SITE 3 AC5 14 ILE A 281 ASN A 294 TRP A 296 FE2 A 350 SITE 4 AC5 14 HOH A1036 BCT A3000 SITE 1 AC6 4 ALA A 10 PHE A 37 PRO A 38 HOH A1165 SITE 1 AC7 4 LEU A 150 ASN A 151 ASP A 152 HOH A1139 SITE 1 AC8 2 ASP A 89 GLN A 148 CRYST1 86.531 86.531 147.640 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011557 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006773 0.00000