data_2IM8 # _entry.id 2IM8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IM8 RCSB RCSB039742 WWPDB D_1000039742 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB SR213 . unspecified PDB 2HFI 'Solution nmr structure of hypothetical protein yppE: Northeast Structural Genomics Consortium Target SR213' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IM8 _pdbx_database_status.recvd_initial_deposition_date 2006-10-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuzin, A.P.' 1 'Shastry, R.' 2 'Janjua, H.' 3 'Cunningham, K.' 4 'Ma, L.C.' 5 'Xiao, R.' 6 'Liu, J.' 7 'Hang, D.' 8 'Baran, M.C.' 9 'Acton, T.B.' 10 'Rost, B.' 11 'Montelione, G.T.' 12 'Tong, L.' 13 'Hunt, J.F.' 14 'Northeast Structural Genomics Consortium (NESG)' 15 # _citation.id primary _citation.title 'X-Ray structure of hypothetical protein yPPE. Northeast Structural Genomics Consortium target SR213.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kuzin, A.P.' 1 primary 'Neely, H.' 2 primary 'Seetharaman, J.' 3 primary 'Shastry, R.' 4 primary 'Janjua, H.' 5 primary 'Cunningham, K.' 6 primary 'Ma, L.C.' 7 primary 'Xiao, R.' 8 primary 'Liu, J.' 9 primary 'Baran, M.C.' 10 primary 'Acton, T.B.' 11 primary 'Rost, B.' 12 primary 'Montelione, G.' 13 primary 'Tong, L.' 14 primary 'Hunt, J.F.' 15 # _cell.entry_id 2IM8 _cell.length_a 44.735 _cell.length_b 70.830 _cell.length_c 76.237 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2IM8 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein yppE' 15695.204 2 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 water nat water 18.015 165 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)LSQTLLE(MSE)TEQ(MSE)IEVAEKGADRYQEGKNSNHSYDFFETIKPAVEENDELAARWAEGALELIKVRRPK YVHKEQIEAVKDNFLELVLQSYVHHIHKKRFKDITESVLYTLHAVKDEIAREDSRLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MLSQTLLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPAVEENDELAARWAEGALELIKVRRPKYVHKEQIEAVKD NFLELVLQSYVHHIHKKRFKDITESVLYTLHAVKDEIAREDSRLEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier SR213 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LEU n 1 3 SER n 1 4 GLN n 1 5 THR n 1 6 LEU n 1 7 LEU n 1 8 GLU n 1 9 MSE n 1 10 THR n 1 11 GLU n 1 12 GLN n 1 13 MSE n 1 14 ILE n 1 15 GLU n 1 16 VAL n 1 17 ALA n 1 18 GLU n 1 19 LYS n 1 20 GLY n 1 21 ALA n 1 22 ASP n 1 23 ARG n 1 24 TYR n 1 25 GLN n 1 26 GLU n 1 27 GLY n 1 28 LYS n 1 29 ASN n 1 30 SER n 1 31 ASN n 1 32 HIS n 1 33 SER n 1 34 TYR n 1 35 ASP n 1 36 PHE n 1 37 PHE n 1 38 GLU n 1 39 THR n 1 40 ILE n 1 41 LYS n 1 42 PRO n 1 43 ALA n 1 44 VAL n 1 45 GLU n 1 46 GLU n 1 47 ASN n 1 48 ASP n 1 49 GLU n 1 50 LEU n 1 51 ALA n 1 52 ALA n 1 53 ARG n 1 54 TRP n 1 55 ALA n 1 56 GLU n 1 57 GLY n 1 58 ALA n 1 59 LEU n 1 60 GLU n 1 61 LEU n 1 62 ILE n 1 63 LYS n 1 64 VAL n 1 65 ARG n 1 66 ARG n 1 67 PRO n 1 68 LYS n 1 69 TYR n 1 70 VAL n 1 71 HIS n 1 72 LYS n 1 73 GLU n 1 74 GLN n 1 75 ILE n 1 76 GLU n 1 77 ALA n 1 78 VAL n 1 79 LYS n 1 80 ASP n 1 81 ASN n 1 82 PHE n 1 83 LEU n 1 84 GLU n 1 85 LEU n 1 86 VAL n 1 87 LEU n 1 88 GLN n 1 89 SER n 1 90 TYR n 1 91 VAL n 1 92 HIS n 1 93 HIS n 1 94 ILE n 1 95 HIS n 1 96 LYS n 1 97 LYS n 1 98 ARG n 1 99 PHE n 1 100 LYS n 1 101 ASP n 1 102 ILE n 1 103 THR n 1 104 GLU n 1 105 SER n 1 106 VAL n 1 107 LEU n 1 108 TYR n 1 109 THR n 1 110 LEU n 1 111 HIS n 1 112 ALA n 1 113 VAL n 1 114 LYS n 1 115 ASP n 1 116 GLU n 1 117 ILE n 1 118 ALA n 1 119 ARG n 1 120 GLU n 1 121 ASP n 1 122 SER n 1 123 ARG n 1 124 LEU n 1 125 GLU n 1 126 HIS n 1 127 HIS n 1 128 HIS n 1 129 HIS n 1 130 HIS n 1 131 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene yppE _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) + Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YPPE_BACSU _struct_ref.pdbx_db_accession P50833 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLSQTLLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPAVEENDELAARWAEGALELIKVRRPKYVHKEQIEAVKD NFLELVLQSYVHHIHKKRFKDITESVLYTLHAVKDEIAREDSR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IM8 A 1 ? 123 ? P50833 1 ? 123 ? 1 123 2 1 2IM8 B 1 ? 123 ? P50833 1 ? 123 ? 1 123 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IM8 MSE A 1 ? UNP P50833 MET 1 'MODIFIED RESIDUE' 1 1 1 2IM8 MSE A 9 ? UNP P50833 MET 9 'MODIFIED RESIDUE' 9 2 1 2IM8 MSE A 13 ? UNP P50833 MET 13 'MODIFIED RESIDUE' 13 3 1 2IM8 LEU A 124 ? UNP P50833 ? ? 'CLONING ARTIFACT' 124 4 1 2IM8 GLU A 125 ? UNP P50833 ? ? 'CLONING ARTIFACT' 125 5 1 2IM8 HIS A 126 ? UNP P50833 ? ? 'CLONING ARTIFACT' 126 6 1 2IM8 HIS A 127 ? UNP P50833 ? ? 'CLONING ARTIFACT' 127 7 1 2IM8 HIS A 128 ? UNP P50833 ? ? 'CLONING ARTIFACT' 128 8 1 2IM8 HIS A 129 ? UNP P50833 ? ? 'CLONING ARTIFACT' 129 9 1 2IM8 HIS A 130 ? UNP P50833 ? ? 'CLONING ARTIFACT' 130 10 1 2IM8 HIS A 131 ? UNP P50833 ? ? 'CLONING ARTIFACT' 131 11 2 2IM8 MSE B 1 ? UNP P50833 MET 1 'MODIFIED RESIDUE' 1 12 2 2IM8 MSE B 9 ? UNP P50833 MET 9 'MODIFIED RESIDUE' 9 13 2 2IM8 MSE B 13 ? UNP P50833 MET 13 'MODIFIED RESIDUE' 13 14 2 2IM8 LEU B 124 ? UNP P50833 ? ? 'CLONING ARTIFACT' 124 15 2 2IM8 GLU B 125 ? UNP P50833 ? ? 'CLONING ARTIFACT' 125 16 2 2IM8 HIS B 126 ? UNP P50833 ? ? 'CLONING ARTIFACT' 126 17 2 2IM8 HIS B 127 ? UNP P50833 ? ? 'CLONING ARTIFACT' 127 18 2 2IM8 HIS B 128 ? UNP P50833 ? ? 'CLONING ARTIFACT' 128 19 2 2IM8 HIS B 129 ? UNP P50833 ? ? 'CLONING ARTIFACT' 129 20 2 2IM8 HIS B 130 ? UNP P50833 ? ? 'CLONING ARTIFACT' 130 21 2 2IM8 HIS B 131 ? UNP P50833 ? ? 'CLONING ARTIFACT' 131 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2IM8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_percent_sol 36.06 _exptl_crystal.description 'THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.8M KH2PO4, 0.8M NaH2PO4, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2006-08-24 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97934 1.0 2 0.97956 1.0 3 0.96806 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97934, 0.97956, 0.96806' # _reflns.entry_id 2IM8 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 30962 _reflns.number_all ? _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.2 _reflns.B_iso_Wilson_estimate 19.0 _reflns.pdbx_redundancy 33.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 93.4 _reflns_shell.Rmerge_I_obs 0.334 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2IM8 _refine.ls_number_reflns_obs 28300 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF 356865.36 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.29 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 89.5 _refine.ls_R_factor_obs 0.236 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.236 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1401 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 27.9 _refine.aniso_B[1][1] -2.93 _refine.aniso_B[2][2] -0.34 _refine.aniso_B[3][3] 3.27 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.357933 _refine.solvent_model_param_bsol 42.5853 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'THE FRIEDEL PAIRS WERE USED FOR PHASING' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2IM8 _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.28 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.30 _refine_analyze.Luzzati_sigma_a_free 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1974 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 2144 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 19.29 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 15.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.72 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 3526 _refine_ls_shell.R_factor_R_work 0.326 _refine_ls_shell.percent_reflns_obs 70.7 _refine_ls_shell.R_factor_R_free 0.417 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 4.9 _refine_ls_shell.number_reflns_R_free 182 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.param 'X-RAY DIFFRACTION' # _struct.entry_id 2IM8 _struct.title 'X-Ray Crystal Structure of Protein yppE from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR213.' _struct.pdbx_descriptor 'Hypothetical protein yppE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IM8 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;SR213, yppE, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 2 ? SER A 30 ? LEU A 2 SER A 30 1 ? 29 HELX_P HELX_P2 2 THR A 39 ? ARG A 65 ? THR A 39 ARG A 65 1 ? 27 HELX_P HELX_P3 3 HIS A 71 ? HIS A 92 ? HIS A 71 HIS A 92 1 ? 22 HELX_P HELX_P4 4 HIS A 95 ? SER A 122 ? HIS A 95 SER A 122 1 ? 28 HELX_P HELX_P5 5 THR B 5 ? ASN B 31 ? THR B 5 ASN B 31 1 ? 27 HELX_P HELX_P6 6 THR B 39 ? ARG B 65 ? THR B 39 ARG B 65 1 ? 27 HELX_P HELX_P7 7 GLN B 74 ? HIS B 92 ? GLN B 74 HIS B 92 1 ? 19 HELX_P HELX_P8 8 HIS B 95 ? ILE B 117 ? HIS B 95 ILE B 117 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A LEU 2 N ? ? A MSE 1 A LEU 2 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A GLU 8 C ? ? ? 1_555 A MSE 9 N ? ? A GLU 8 A MSE 9 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A MSE 9 C ? ? ? 1_555 A THR 10 N ? ? A MSE 9 A THR 10 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A GLN 12 C ? ? ? 1_555 A MSE 13 N ? ? A GLN 12 A MSE 13 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A MSE 13 C ? ? ? 1_555 A ILE 14 N ? ? A MSE 13 A ILE 14 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? B MSE 1 C ? ? ? 1_555 B LEU 2 N ? ? B MSE 1 B LEU 2 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? B GLU 8 C ? ? ? 1_555 B MSE 9 N ? ? B GLU 8 B MSE 9 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? B MSE 9 C ? ? ? 1_555 B THR 10 N ? ? B MSE 9 B THR 10 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale ? ? B GLN 12 C ? ? ? 1_555 B MSE 13 N ? ? B GLN 12 B MSE 13 1_555 ? ? ? ? ? ? ? 1.332 ? covale10 covale ? ? B MSE 13 C ? ? ? 1_555 B ILE 14 N ? ? B MSE 13 B ILE 14 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE PO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ASN A 31 ? ASN A 31 . ? 4_566 ? 2 AC1 7 SER A 33 ? SER A 33 . ? 4_566 ? 3 AC1 7 LYS A 114 ? LYS A 114 . ? 1_555 ? 4 AC1 7 ASP A 115 ? ASP A 115 . ? 1_555 ? 5 AC1 7 HOH D . ? HOH A 265 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 295 . ? 4_566 ? 7 AC1 7 LYS B 100 ? LYS B 100 . ? 1_555 ? # _database_PDB_matrix.entry_id 2IM8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IM8 _atom_sites.fract_transf_matrix[1][1] 0.022354 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014118 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013117 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 MSE 9 9 9 MSE MSE A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 MSE 13 13 13 MSE MSE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 TRP 54 54 54 TRP TRP A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 HIS 111 111 111 HIS HIS A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 LEU 124 124 ? ? ? A . n A 1 125 GLU 125 125 ? ? ? A . n A 1 126 HIS 126 126 ? ? ? A . n A 1 127 HIS 127 127 ? ? ? A . n A 1 128 HIS 128 128 ? ? ? A . n A 1 129 HIS 129 129 ? ? ? A . n A 1 130 HIS 130 130 ? ? ? A . n A 1 131 HIS 131 131 ? ? ? A . n B 1 1 MSE 1 1 1 MSE MET B . n B 1 2 LEU 2 2 2 LEU LEU B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 GLN 4 4 4 GLN GLN B . n B 1 5 THR 5 5 5 THR THR B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 MSE 9 9 9 MSE MSE B . n B 1 10 THR 10 10 10 THR THR B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 GLN 12 12 12 GLN GLN B . n B 1 13 MSE 13 13 13 MSE MSE B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 GLU 15 15 15 GLU GLU B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 GLU 18 18 18 GLU GLU B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 ASP 22 22 22 ASP ASP B . n B 1 23 ARG 23 23 23 ARG ARG B . n B 1 24 TYR 24 24 24 TYR TYR B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 ASN 29 29 29 ASN ASN B . n B 1 30 SER 30 30 30 SER SER B . n B 1 31 ASN 31 31 31 ASN ASN B . n B 1 32 HIS 32 32 32 HIS HIS B . n B 1 33 SER 33 33 33 SER SER B . n B 1 34 TYR 34 34 34 TYR TYR B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 PHE 36 36 36 PHE PHE B . n B 1 37 PHE 37 37 37 PHE PHE B . n B 1 38 GLU 38 38 38 GLU GLU B . n B 1 39 THR 39 39 39 THR THR B . n B 1 40 ILE 40 40 40 ILE ILE B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 PRO 42 42 42 PRO PRO B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 ASN 47 47 47 ASN ASN B . n B 1 48 ASP 48 48 48 ASP ASP B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 ALA 51 51 51 ALA ALA B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 ARG 53 53 53 ARG ARG B . n B 1 54 TRP 54 54 54 TRP TRP B . n B 1 55 ALA 55 55 55 ALA ALA B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 GLY 57 57 57 GLY GLY B . n B 1 58 ALA 58 58 58 ALA ALA B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 GLU 60 60 60 GLU GLU B . n B 1 61 LEU 61 61 61 LEU LEU B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 LYS 63 63 63 LYS LYS B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 ARG 65 65 65 ARG ARG B . n B 1 66 ARG 66 66 66 ARG ARG B . n B 1 67 PRO 67 67 67 PRO PRO B . n B 1 68 LYS 68 68 ? ? ? B . n B 1 69 TYR 69 69 ? ? ? B . n B 1 70 VAL 70 70 ? ? ? B . n B 1 71 HIS 71 71 71 HIS HIS B . n B 1 72 LYS 72 72 72 LYS LYS B . n B 1 73 GLU 73 73 73 GLU GLU B . n B 1 74 GLN 74 74 74 GLN GLN B . n B 1 75 ILE 75 75 75 ILE ILE B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 ALA 77 77 77 ALA ALA B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 LYS 79 79 79 LYS LYS B . n B 1 80 ASP 80 80 80 ASP ASP B . n B 1 81 ASN 81 81 81 ASN ASN B . n B 1 82 PHE 82 82 82 PHE PHE B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 LEU 85 85 85 LEU LEU B . n B 1 86 VAL 86 86 86 VAL VAL B . n B 1 87 LEU 87 87 87 LEU LEU B . n B 1 88 GLN 88 88 88 GLN GLN B . n B 1 89 SER 89 89 89 SER SER B . n B 1 90 TYR 90 90 90 TYR TYR B . n B 1 91 VAL 91 91 91 VAL VAL B . n B 1 92 HIS 92 92 92 HIS HIS B . n B 1 93 HIS 93 93 93 HIS HIS B . n B 1 94 ILE 94 94 94 ILE ILE B . n B 1 95 HIS 95 95 95 HIS HIS B . n B 1 96 LYS 96 96 96 LYS LYS B . n B 1 97 LYS 97 97 97 LYS LYS B . n B 1 98 ARG 98 98 98 ARG ARG B . n B 1 99 PHE 99 99 99 PHE PHE B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 ASP 101 101 101 ASP ASP B . n B 1 102 ILE 102 102 102 ILE ILE B . n B 1 103 THR 103 103 103 THR THR B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 SER 105 105 105 SER SER B . n B 1 106 VAL 106 106 106 VAL VAL B . n B 1 107 LEU 107 107 107 LEU LEU B . n B 1 108 TYR 108 108 108 TYR TYR B . n B 1 109 THR 109 109 109 THR THR B . n B 1 110 LEU 110 110 110 LEU LEU B . n B 1 111 HIS 111 111 111 HIS HIS B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 VAL 113 113 113 VAL VAL B . n B 1 114 LYS 114 114 114 LYS LYS B . n B 1 115 ASP 115 115 115 ASP ASP B . n B 1 116 GLU 116 116 116 GLU GLU B . n B 1 117 ILE 117 117 117 ILE ILE B . n B 1 118 ALA 118 118 118 ALA ALA B . n B 1 119 ARG 119 119 119 ARG ARG B . n B 1 120 GLU 120 120 ? ? ? B . n B 1 121 ASP 121 121 ? ? ? B . n B 1 122 SER 122 122 ? ? ? B . n B 1 123 ARG 123 123 ? ? ? B . n B 1 124 LEU 124 124 ? ? ? B . n B 1 125 GLU 125 125 ? ? ? B . n B 1 126 HIS 126 126 ? ? ? B . n B 1 127 HIS 127 127 ? ? ? B . n B 1 128 HIS 128 128 ? ? ? B . n B 1 129 HIS 129 129 ? ? ? B . n B 1 130 HIS 130 130 ? ? ? B . n B 1 131 HIS 131 131 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 1 201 1 PO4 PO4 A . D 3 HOH 1 202 1 HOH WAT A . D 3 HOH 2 203 2 HOH WAT A . D 3 HOH 3 204 3 HOH WAT A . D 3 HOH 4 205 4 HOH WAT A . D 3 HOH 5 206 5 HOH WAT A . D 3 HOH 6 207 7 HOH WAT A . D 3 HOH 7 208 8 HOH WAT A . D 3 HOH 8 209 9 HOH WAT A . D 3 HOH 9 210 10 HOH WAT A . D 3 HOH 10 211 11 HOH WAT A . D 3 HOH 11 212 12 HOH WAT A . D 3 HOH 12 213 13 HOH WAT A . D 3 HOH 13 214 14 HOH WAT A . D 3 HOH 14 215 15 HOH WAT A . D 3 HOH 15 216 16 HOH WAT A . D 3 HOH 16 217 18 HOH WAT A . D 3 HOH 17 218 19 HOH WAT A . D 3 HOH 18 219 20 HOH WAT A . D 3 HOH 19 220 21 HOH WAT A . D 3 HOH 20 221 22 HOH WAT A . D 3 HOH 21 222 23 HOH WAT A . D 3 HOH 22 223 24 HOH WAT A . D 3 HOH 23 224 26 HOH WAT A . D 3 HOH 24 225 27 HOH WAT A . D 3 HOH 25 226 29 HOH WAT A . D 3 HOH 26 227 31 HOH WAT A . D 3 HOH 27 228 33 HOH WAT A . D 3 HOH 28 229 34 HOH WAT A . D 3 HOH 29 230 35 HOH WAT A . D 3 HOH 30 231 36 HOH WAT A . D 3 HOH 31 232 38 HOH WAT A . D 3 HOH 32 233 39 HOH WAT A . D 3 HOH 33 234 41 HOH WAT A . D 3 HOH 34 235 42 HOH WAT A . D 3 HOH 35 236 45 HOH WAT A . D 3 HOH 36 237 46 HOH WAT A . D 3 HOH 37 238 48 HOH WAT A . D 3 HOH 38 239 49 HOH WAT A . D 3 HOH 39 240 51 HOH WAT A . D 3 HOH 40 241 52 HOH WAT A . D 3 HOH 41 242 53 HOH WAT A . D 3 HOH 42 243 54 HOH WAT A . D 3 HOH 43 244 57 HOH WAT A . D 3 HOH 44 245 58 HOH WAT A . D 3 HOH 45 246 63 HOH WAT A . D 3 HOH 46 247 65 HOH WAT A . D 3 HOH 47 248 66 HOH WAT A . D 3 HOH 48 249 67 HOH WAT A . D 3 HOH 49 250 68 HOH WAT A . D 3 HOH 50 251 69 HOH WAT A . D 3 HOH 51 252 70 HOH WAT A . D 3 HOH 52 253 71 HOH WAT A . D 3 HOH 53 254 72 HOH WAT A . D 3 HOH 54 255 73 HOH WAT A . D 3 HOH 55 256 75 HOH WAT A . D 3 HOH 56 257 76 HOH WAT A . D 3 HOH 57 258 77 HOH WAT A . D 3 HOH 58 259 78 HOH WAT A . D 3 HOH 59 260 79 HOH WAT A . D 3 HOH 60 261 83 HOH WAT A . D 3 HOH 61 262 84 HOH WAT A . D 3 HOH 62 263 85 HOH WAT A . D 3 HOH 63 264 86 HOH WAT A . D 3 HOH 64 265 87 HOH WAT A . D 3 HOH 65 266 89 HOH WAT A . D 3 HOH 66 267 90 HOH WAT A . D 3 HOH 67 268 91 HOH WAT A . D 3 HOH 68 269 93 HOH WAT A . D 3 HOH 69 270 94 HOH WAT A . D 3 HOH 70 271 95 HOH WAT A . D 3 HOH 71 272 96 HOH WAT A . D 3 HOH 72 273 97 HOH WAT A . D 3 HOH 73 274 98 HOH WAT A . D 3 HOH 74 275 99 HOH WAT A . D 3 HOH 75 276 104 HOH WAT A . D 3 HOH 76 277 106 HOH WAT A . D 3 HOH 77 278 107 HOH WAT A . D 3 HOH 78 279 109 HOH WAT A . D 3 HOH 79 280 111 HOH WAT A . D 3 HOH 80 281 114 HOH WAT A . D 3 HOH 81 282 117 HOH WAT A . D 3 HOH 82 283 119 HOH WAT A . D 3 HOH 83 284 122 HOH WAT A . D 3 HOH 84 285 124 HOH WAT A . D 3 HOH 85 286 125 HOH WAT A . D 3 HOH 86 287 126 HOH WAT A . D 3 HOH 87 288 128 HOH WAT A . D 3 HOH 88 289 132 HOH WAT A . D 3 HOH 89 290 136 HOH WAT A . D 3 HOH 90 291 137 HOH WAT A . D 3 HOH 91 292 141 HOH WAT A . D 3 HOH 92 293 142 HOH WAT A . D 3 HOH 93 294 143 HOH WAT A . D 3 HOH 94 295 146 HOH WAT A . D 3 HOH 95 296 147 HOH WAT A . D 3 HOH 96 297 149 HOH WAT A . D 3 HOH 97 298 150 HOH WAT A . D 3 HOH 98 299 154 HOH WAT A . D 3 HOH 99 300 158 HOH WAT A . D 3 HOH 100 301 162 HOH WAT A . D 3 HOH 101 302 163 HOH WAT A . D 3 HOH 102 303 164 HOH WAT A . D 3 HOH 103 304 167 HOH WAT A . D 3 HOH 104 305 168 HOH WAT A . D 3 HOH 105 306 170 HOH WAT A . E 3 HOH 1 132 6 HOH WAT B . E 3 HOH 2 133 17 HOH WAT B . E 3 HOH 3 134 25 HOH WAT B . E 3 HOH 4 135 28 HOH WAT B . E 3 HOH 5 136 30 HOH WAT B . E 3 HOH 6 137 32 HOH WAT B . E 3 HOH 7 138 37 HOH WAT B . E 3 HOH 8 139 40 HOH WAT B . E 3 HOH 9 140 43 HOH WAT B . E 3 HOH 10 141 44 HOH WAT B . E 3 HOH 11 142 47 HOH WAT B . E 3 HOH 12 143 50 HOH WAT B . E 3 HOH 13 144 55 HOH WAT B . E 3 HOH 14 145 56 HOH WAT B . E 3 HOH 15 146 59 HOH WAT B . E 3 HOH 16 147 60 HOH WAT B . E 3 HOH 17 148 61 HOH WAT B . E 3 HOH 18 149 62 HOH WAT B . E 3 HOH 19 150 64 HOH WAT B . E 3 HOH 20 151 74 HOH WAT B . E 3 HOH 21 152 80 HOH WAT B . E 3 HOH 22 153 81 HOH WAT B . E 3 HOH 23 154 82 HOH WAT B . E 3 HOH 24 155 88 HOH WAT B . E 3 HOH 25 156 92 HOH WAT B . E 3 HOH 26 157 100 HOH WAT B . E 3 HOH 27 158 101 HOH WAT B . E 3 HOH 28 159 102 HOH WAT B . E 3 HOH 29 160 103 HOH WAT B . E 3 HOH 30 161 105 HOH WAT B . E 3 HOH 31 162 108 HOH WAT B . E 3 HOH 32 163 112 HOH WAT B . E 3 HOH 33 164 113 HOH WAT B . E 3 HOH 34 165 115 HOH WAT B . E 3 HOH 35 166 116 HOH WAT B . E 3 HOH 36 167 118 HOH WAT B . E 3 HOH 37 168 120 HOH WAT B . E 3 HOH 38 169 121 HOH WAT B . E 3 HOH 39 170 127 HOH WAT B . E 3 HOH 40 171 129 HOH WAT B . E 3 HOH 41 172 130 HOH WAT B . E 3 HOH 42 173 131 HOH WAT B . E 3 HOH 43 174 133 HOH WAT B . E 3 HOH 44 175 134 HOH WAT B . E 3 HOH 45 176 135 HOH WAT B . E 3 HOH 46 177 138 HOH WAT B . E 3 HOH 47 178 139 HOH WAT B . E 3 HOH 48 179 140 HOH WAT B . E 3 HOH 49 180 145 HOH WAT B . E 3 HOH 50 181 148 HOH WAT B . E 3 HOH 51 182 152 HOH WAT B . E 3 HOH 52 183 153 HOH WAT B . E 3 HOH 53 184 155 HOH WAT B . E 3 HOH 54 185 157 HOH WAT B . E 3 HOH 55 186 160 HOH WAT B . E 3 HOH 56 187 161 HOH WAT B . E 3 HOH 57 188 165 HOH WAT B . E 3 HOH 58 189 169 HOH WAT B . E 3 HOH 59 190 171 HOH WAT B . E 3 HOH 60 191 172 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 9 A MSE 9 ? MET SELENOMETHIONINE 3 A MSE 13 A MSE 13 ? MET SELENOMETHIONINE 4 B MSE 1 B MSE 1 ? MET SELENOMETHIONINE 5 B MSE 9 B MSE 9 ? MET SELENOMETHIONINE 6 B MSE 13 B MSE 13 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D 2 1 B,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-17 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 ADSC 'data collection' QUANTUM ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 39 ? ? -128.73 -58.37 2 1 HIS A 92 ? ? 35.11 49.62 3 1 THR B 39 ? ? -127.53 -62.38 4 1 LYS B 63 ? ? -73.21 -73.83 5 1 LYS B 72 ? ? -60.51 -173.76 6 1 HIS B 92 ? ? 39.33 52.48 7 1 ALA B 118 ? ? -162.02 43.53 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 124 ? A LEU 124 2 1 Y 1 A GLU 125 ? A GLU 125 3 1 Y 1 A HIS 126 ? A HIS 126 4 1 Y 1 A HIS 127 ? A HIS 127 5 1 Y 1 A HIS 128 ? A HIS 128 6 1 Y 1 A HIS 129 ? A HIS 129 7 1 Y 1 A HIS 130 ? A HIS 130 8 1 Y 1 A HIS 131 ? A HIS 131 9 1 Y 1 B LYS 68 ? B LYS 68 10 1 Y 1 B TYR 69 ? B TYR 69 11 1 Y 1 B VAL 70 ? B VAL 70 12 1 Y 1 B GLU 120 ? B GLU 120 13 1 Y 1 B ASP 121 ? B ASP 121 14 1 Y 1 B SER 122 ? B SER 122 15 1 Y 1 B ARG 123 ? B ARG 123 16 1 Y 1 B LEU 124 ? B LEU 124 17 1 Y 1 B GLU 125 ? B GLU 125 18 1 Y 1 B HIS 126 ? B HIS 126 19 1 Y 1 B HIS 127 ? B HIS 127 20 1 Y 1 B HIS 128 ? B HIS 128 21 1 Y 1 B HIS 129 ? B HIS 129 22 1 Y 1 B HIS 130 ? B HIS 130 23 1 Y 1 B HIS 131 ? B HIS 131 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #