HEADER LIGASE, HYDROLASE 10-OCT-06 2IOB TITLE E. COLI BIFUNCTIONAL GLUTATHIONYLSPERMIDINE SYNTHETASE/AMIDASE APO TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL GLUTATHIONYLSPERMIDINE SYNTHETASE/AMIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTATHIONYLSPERMIDINE SYNTHASE, GLUTATHIONYLSPERMIDINE COMPND 5 AMIDASE; COMPND 6 EC: 6.3.1.8, 3.5.1.78; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B (NOVAGEN) KEYWDS BIFUNCTIONAL GLUTATHIONYLSPERMIDINE SYNTHETASE/AMIDASE, LIGASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.PAI,B.Y.CHIANG,T.P.KO,C.C.CHOU,C.M.CHONG,F.J.YEN,J.K.COWARD,A.H.- AUTHOR 2 J.WANG,C.H.LIN REVDAT 4 13-MAR-24 2IOB 1 REMARK REVDAT 3 24-FEB-09 2IOB 1 VERSN REVDAT 2 26-DEC-06 2IOB 1 JRNL REVDAT 1 12-DEC-06 2IOB 0 JRNL AUTH C.H.PAI,B.Y.CHIANG,T.P.KO,C.C.CHOU,C.M.CHONG,F.J.YEN,S.CHEN, JRNL AUTH 2 J.K.COWARD,A.H.-J.WANG,C.H.LIN JRNL TITL DUAL BINDING SITES FOR TRANSLOCATION CATALYSIS BY JRNL TITL 2 ESCHERICHIA COLI GLUTATHIONYLSPERMIDINE SYNTHETASE JRNL REF EMBO J. V. 25 5970 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 17124497 JRNL DOI 10.1038/SJ.EMBOJ.7601440 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XTALVIEW REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 67294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 1.929 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.99 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.203 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-04; 11-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 200; 200 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL12B2; BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00; 0.9797, 0.9799, 0.9537 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 0.6M MAGNESIUM CHLORIDE, REMARK 280 0.1M TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.63350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.48200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.63350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.48200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 620 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 ASP A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 ASP A 523 REMARK 465 GLU A 524 REMARK 465 LEU A 525 REMARK 465 VAL A 526 REMARK 465 LYS A 527 REMARK 465 THR A 528 REMARK 465 GLY A 529 REMARK 465 ILE A 535 REMARK 465 ALA A 536 REMARK 465 GLY A 537 REMARK 465 ARG A 538 REMARK 465 CYS A 539 REMARK 465 GLY A 540 REMARK 465 SER A 541 REMARK 465 ASN A 542 REMARK 465 ILE A 543 REMARK 465 ASP A 544 REMARK 465 LEU A 545 REMARK 465 VAL A 546 REMARK 465 SER A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 GLU A 550 REMARK 465 GLU A 551 REMARK 465 VAL A 552 REMARK 465 LEU A 553 REMARK 465 ASP A 554 REMARK 465 LYS A 555 REMARK 465 THR A 556 REMARK 465 SER A 557 REMARK 465 GLY A 558 REMARK 465 LYS A 559 REMARK 465 PHE A 560 REMARK 465 ALA A 561 REMARK 465 GLU A 562 REMARK 465 GLN A 563 REMARK 465 LYS A 619 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 SER B 7 REMARK 465 GLN B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 PHE B 12 REMARK 465 ALA B 536 REMARK 465 GLY B 537 REMARK 465 ARG B 538 REMARK 465 CYS B 539 REMARK 465 GLY B 540 REMARK 465 SER B 541 REMARK 465 ASN B 542 REMARK 465 SER B 547 REMARK 465 HIS B 548 REMARK 465 HIS B 549 REMARK 465 GLU B 550 REMARK 465 GLU B 551 REMARK 465 VAL B 552 REMARK 465 LEU B 553 REMARK 465 ASP B 554 REMARK 465 LYS B 555 REMARK 465 THR B 556 REMARK 465 SER B 557 REMARK 465 GLY B 558 REMARK 465 LYS B 559 REMARK 465 PHE B 560 REMARK 465 ALA B 561 REMARK 465 GLU B 562 REMARK 465 GLN B 563 REMARK 465 LYS B 619 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 24 NH2 ARG B 65 2.00 REMARK 500 O HOH A 1019 O HOH A 1205 2.08 REMARK 500 O VAL B 576 O HOH B 1069 2.13 REMARK 500 OD2 ASP A 322 NH1 ARG A 324 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 306 CB GLN A 306 CG -0.163 REMARK 500 CYS A 320 CB CYS A 320 SG 0.103 REMARK 500 MET B 189 SD MET B 189 CE -0.357 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 165 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 300 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 VAL A 328 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 414 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 414 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 28 54.70 -107.36 REMARK 500 SER A 31 -72.01 6.44 REMARK 500 SER A 32 1.22 -40.60 REMARK 500 GLU A 39 -71.51 -70.74 REMARK 500 ASP A 49 -121.37 62.29 REMARK 500 LYS A 127 -86.98 -2.55 REMARK 500 VAL A 150 -58.25 -141.25 REMARK 500 ASN A 171 40.01 70.83 REMARK 500 ASN A 241 -16.59 -140.58 REMARK 500 ILE A 245 -56.43 -122.41 REMARK 500 ASP A 322 -165.39 -166.10 REMARK 500 CYS A 338 -4.38 92.29 REMARK 500 LEU A 344 -54.82 -128.99 REMARK 500 VAL A 478 -61.83 -94.90 REMARK 500 TRP A 571 89.89 -172.85 REMARK 500 VAL A 576 -72.70 -114.52 REMARK 500 ASP A 577 63.16 -115.17 REMARK 500 SER B 28 64.44 -104.45 REMARK 500 SER B 32 16.98 -59.28 REMARK 500 TYR B 38 13.26 -64.32 REMARK 500 ASP B 49 -119.93 54.74 REMARK 500 PHE B 126 42.34 -109.40 REMARK 500 LYS B 127 -89.31 -11.58 REMARK 500 HIS B 139 78.53 -100.65 REMARK 500 VAL B 150 -65.56 -132.30 REMARK 500 PRO B 154 152.22 -45.54 REMARK 500 ASN B 171 50.13 73.81 REMARK 500 TYR B 197 -4.68 73.46 REMARK 500 CYS B 338 2.57 87.10 REMARK 500 LEU B 344 -56.23 -125.78 REMARK 500 HIS B 375 31.13 -90.83 REMARK 500 TRP B 571 78.63 -169.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 567 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IO7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MG2+ AND AMPPNP REMARK 900 RELATED ID: 2IO8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MG2+ AND ADP REMARK 900 RELATED ID: 2IO9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MG2+, GSH AND ADP REMARK 900 RELATED ID: 2IOA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MG2+, ADP AND PHOSPHINATE INHIBITOR DBREF 2IOB A 1 619 UNP P0AES0 GSP_ECOLI 1 619 DBREF 2IOB B 1 619 UNP P0AES0 GSP_ECOLI 1 619 SEQRES 1 A 619 MET SER LYS GLY THR THR SER GLN ASP ALA PRO PHE GLY SEQRES 2 A 619 THR LEU LEU GLY TYR ALA PRO GLY GLY VAL ALA ILE TYR SEQRES 3 A 619 SER SER ASP TYR SER SER LEU ASP PRO GLN GLU TYR GLU SEQRES 4 A 619 ASP ASP ALA VAL PHE ARG SER TYR ILE ASP ASP GLU TYR SEQRES 5 A 619 MET GLY HIS LYS TRP GLN CYS VAL GLU PHE ALA ARG ARG SEQRES 6 A 619 PHE LEU PHE LEU ASN TYR GLY VAL VAL PHE THR ASP VAL SEQRES 7 A 619 GLY MET ALA TRP GLU ILE PHE SER LEU ARG PHE LEU ARG SEQRES 8 A 619 GLU VAL VAL ASN ASP ASN ILE LEU PRO LEU GLN ALA PHE SEQRES 9 A 619 PRO ASN GLY SER PRO ARG ALA PRO VAL ALA GLY ALA LEU SEQRES 10 A 619 LEU ILE TRP ASP LYS GLY GLY GLU PHE LYS ASP THR GLY SEQRES 11 A 619 HIS VAL ALA ILE ILE THR GLN LEU HIS GLY ASN LYS VAL SEQRES 12 A 619 ARG ILE ALA GLU GLN ASN VAL ILE HIS SER PRO LEU PRO SEQRES 13 A 619 GLN GLY GLN GLN TRP THR ARG GLU LEU GLU MET VAL VAL SEQRES 14 A 619 GLU ASN GLY CYS TYR THR LEU LYS ASP THR PHE ASP ASP SEQRES 15 A 619 THR THR ILE LEU GLY TRP MET ILE GLN THR GLU ASP THR SEQRES 16 A 619 GLU TYR SER LEU PRO GLN PRO GLU ILE ALA GLY GLU LEU SEQRES 17 A 619 LEU LYS ILE SER GLY ALA ARG LEU GLU ASN LYS GLY GLN SEQRES 18 A 619 PHE ASP GLY LYS TRP LEU ASP GLU LYS ASP PRO LEU GLN SEQRES 19 A 619 ASN ALA TYR VAL GLN ALA ASN GLY GLN VAL ILE ASN GLN SEQRES 20 A 619 ASP PRO TYR HIS TYR TYR THR ILE THR GLU SER ALA GLU SEQRES 21 A 619 GLN GLU LEU ILE LYS ALA THR ASN GLU LEU HIS LEU MET SEQRES 22 A 619 TYR LEU HIS ALA THR ASP LYS VAL LEU LYS ASP ASP ASN SEQRES 23 A 619 LEU LEU ALA LEU PHE ASP ILE PRO LYS ILE LEU TRP PRO SEQRES 24 A 619 ARG LEU ARG LEU SER TRP GLN ARG ARG ARG HIS HIS MET SEQRES 25 A 619 ILE THR GLY ARG MET ASP PHE CYS MET ASP GLU ARG GLY SEQRES 26 A 619 LEU LYS VAL TYR GLU TYR ASN ALA ASP SER ALA SER CYS SEQRES 27 A 619 HIS THR GLU ALA GLY LEU ILE LEU GLU ARG TRP ALA GLU SEQRES 28 A 619 GLN GLY TYR LYS GLY ASN GLY PHE ASN PRO ALA GLU GLY SEQRES 29 A 619 LEU ILE ASN GLU LEU ALA GLY ALA TRP LYS HIS SER ARG SEQRES 30 A 619 ALA ARG PRO PHE VAL HIS ILE MET GLN ASP LYS ASP ILE SEQRES 31 A 619 GLU GLU ASN TYR HIS ALA GLN PHE MET GLU GLN ALA LEU SEQRES 32 A 619 HIS GLN ALA GLY PHE GLU THR ARG ILE LEU ARG GLY LEU SEQRES 33 A 619 ASP GLU LEU GLY TRP ASP ALA ALA GLY GLN LEU ILE ASP SEQRES 34 A 619 GLY GLU GLY ARG LEU VAL ASN CYS VAL TRP LYS THR TRP SEQRES 35 A 619 ALA TRP GLU THR ALA PHE ASP GLN ILE ARG GLU VAL SER SEQRES 36 A 619 ASP ARG GLU PHE ALA ALA VAL PRO ILE ARG THR GLY HIS SEQRES 37 A 619 PRO GLN ASN GLU VAL ARG LEU ILE ASP VAL LEU LEU ARG SEQRES 38 A 619 PRO GLU VAL LEU VAL PHE GLU PRO LEU TRP THR VAL ILE SEQRES 39 A 619 PRO GLY ASN LYS ALA ILE LEU PRO ILE LEU TRP SER LEU SEQRES 40 A 619 PHE PRO HIS HIS ARG TYR LEU LEU ASP THR ASP PHE THR SEQRES 41 A 619 VAL ASN ASP GLU LEU VAL LYS THR GLY TYR ALA VAL LYS SEQRES 42 A 619 PRO ILE ALA GLY ARG CYS GLY SER ASN ILE ASP LEU VAL SEQRES 43 A 619 SER HIS HIS GLU GLU VAL LEU ASP LYS THR SER GLY LYS SEQRES 44 A 619 PHE ALA GLU GLN LYS ASN ILE TYR GLN GLN LEU TRP CYS SEQRES 45 A 619 LEU PRO LYS VAL ASP GLY LYS TYR ILE GLN VAL CYS THR SEQRES 46 A 619 PHE THR VAL GLY GLY ASN TYR GLY GLY THR CYS LEU ARG SEQRES 47 A 619 GLY ASP GLU SER LEU VAL ILE LYS LYS GLU SER ASP ILE SEQRES 48 A 619 GLU PRO LEU ILE VAL VAL LYS LYS SEQRES 1 B 619 MET SER LYS GLY THR THR SER GLN ASP ALA PRO PHE GLY SEQRES 2 B 619 THR LEU LEU GLY TYR ALA PRO GLY GLY VAL ALA ILE TYR SEQRES 3 B 619 SER SER ASP TYR SER SER LEU ASP PRO GLN GLU TYR GLU SEQRES 4 B 619 ASP ASP ALA VAL PHE ARG SER TYR ILE ASP ASP GLU TYR SEQRES 5 B 619 MET GLY HIS LYS TRP GLN CYS VAL GLU PHE ALA ARG ARG SEQRES 6 B 619 PHE LEU PHE LEU ASN TYR GLY VAL VAL PHE THR ASP VAL SEQRES 7 B 619 GLY MET ALA TRP GLU ILE PHE SER LEU ARG PHE LEU ARG SEQRES 8 B 619 GLU VAL VAL ASN ASP ASN ILE LEU PRO LEU GLN ALA PHE SEQRES 9 B 619 PRO ASN GLY SER PRO ARG ALA PRO VAL ALA GLY ALA LEU SEQRES 10 B 619 LEU ILE TRP ASP LYS GLY GLY GLU PHE LYS ASP THR GLY SEQRES 11 B 619 HIS VAL ALA ILE ILE THR GLN LEU HIS GLY ASN LYS VAL SEQRES 12 B 619 ARG ILE ALA GLU GLN ASN VAL ILE HIS SER PRO LEU PRO SEQRES 13 B 619 GLN GLY GLN GLN TRP THR ARG GLU LEU GLU MET VAL VAL SEQRES 14 B 619 GLU ASN GLY CYS TYR THR LEU LYS ASP THR PHE ASP ASP SEQRES 15 B 619 THR THR ILE LEU GLY TRP MET ILE GLN THR GLU ASP THR SEQRES 16 B 619 GLU TYR SER LEU PRO GLN PRO GLU ILE ALA GLY GLU LEU SEQRES 17 B 619 LEU LYS ILE SER GLY ALA ARG LEU GLU ASN LYS GLY GLN SEQRES 18 B 619 PHE ASP GLY LYS TRP LEU ASP GLU LYS ASP PRO LEU GLN SEQRES 19 B 619 ASN ALA TYR VAL GLN ALA ASN GLY GLN VAL ILE ASN GLN SEQRES 20 B 619 ASP PRO TYR HIS TYR TYR THR ILE THR GLU SER ALA GLU SEQRES 21 B 619 GLN GLU LEU ILE LYS ALA THR ASN GLU LEU HIS LEU MET SEQRES 22 B 619 TYR LEU HIS ALA THR ASP LYS VAL LEU LYS ASP ASP ASN SEQRES 23 B 619 LEU LEU ALA LEU PHE ASP ILE PRO LYS ILE LEU TRP PRO SEQRES 24 B 619 ARG LEU ARG LEU SER TRP GLN ARG ARG ARG HIS HIS MET SEQRES 25 B 619 ILE THR GLY ARG MET ASP PHE CYS MET ASP GLU ARG GLY SEQRES 26 B 619 LEU LYS VAL TYR GLU TYR ASN ALA ASP SER ALA SER CYS SEQRES 27 B 619 HIS THR GLU ALA GLY LEU ILE LEU GLU ARG TRP ALA GLU SEQRES 28 B 619 GLN GLY TYR LYS GLY ASN GLY PHE ASN PRO ALA GLU GLY SEQRES 29 B 619 LEU ILE ASN GLU LEU ALA GLY ALA TRP LYS HIS SER ARG SEQRES 30 B 619 ALA ARG PRO PHE VAL HIS ILE MET GLN ASP LYS ASP ILE SEQRES 31 B 619 GLU GLU ASN TYR HIS ALA GLN PHE MET GLU GLN ALA LEU SEQRES 32 B 619 HIS GLN ALA GLY PHE GLU THR ARG ILE LEU ARG GLY LEU SEQRES 33 B 619 ASP GLU LEU GLY TRP ASP ALA ALA GLY GLN LEU ILE ASP SEQRES 34 B 619 GLY GLU GLY ARG LEU VAL ASN CYS VAL TRP LYS THR TRP SEQRES 35 B 619 ALA TRP GLU THR ALA PHE ASP GLN ILE ARG GLU VAL SER SEQRES 36 B 619 ASP ARG GLU PHE ALA ALA VAL PRO ILE ARG THR GLY HIS SEQRES 37 B 619 PRO GLN ASN GLU VAL ARG LEU ILE ASP VAL LEU LEU ARG SEQRES 38 B 619 PRO GLU VAL LEU VAL PHE GLU PRO LEU TRP THR VAL ILE SEQRES 39 B 619 PRO GLY ASN LYS ALA ILE LEU PRO ILE LEU TRP SER LEU SEQRES 40 B 619 PHE PRO HIS HIS ARG TYR LEU LEU ASP THR ASP PHE THR SEQRES 41 B 619 VAL ASN ASP GLU LEU VAL LYS THR GLY TYR ALA VAL LYS SEQRES 42 B 619 PRO ILE ALA GLY ARG CYS GLY SER ASN ILE ASP LEU VAL SEQRES 43 B 619 SER HIS HIS GLU GLU VAL LEU ASP LYS THR SER GLY LYS SEQRES 44 B 619 PHE ALA GLU GLN LYS ASN ILE TYR GLN GLN LEU TRP CYS SEQRES 45 B 619 LEU PRO LYS VAL ASP GLY LYS TYR ILE GLN VAL CYS THR SEQRES 46 B 619 PHE THR VAL GLY GLY ASN TYR GLY GLY THR CYS LEU ARG SEQRES 47 B 619 GLY ASP GLU SER LEU VAL ILE LYS LYS GLU SER ASP ILE SEQRES 48 B 619 GLU PRO LEU ILE VAL VAL LYS LYS FORMUL 3 HOH *1224(H2 O) HELIX 1 1 PRO A 35 ASP A 41 1 7 HELIX 2 2 GLN A 58 GLY A 72 1 15 HELIX 3 3 MET A 80 LEU A 87 5 8 HELIX 4 4 GLY A 123 LYS A 127 5 5 HELIX 5 5 ALA A 205 LYS A 210 5 6 HELIX 6 6 ASP A 231 GLY A 242 1 12 HELIX 7 7 GLU A 257 ASP A 284 1 28 HELIX 8 8 ASP A 284 ALA A 289 1 6 HELIX 9 9 LEU A 290 ASP A 292 5 3 HELIX 10 10 PRO A 294 ILE A 296 5 3 HELIX 11 11 LEU A 297 ARG A 309 1 13 HELIX 12 12 HIS A 310 MET A 312 5 3 HELIX 13 13 CYS A 338 LEU A 344 1 7 HELIX 14 14 LEU A 344 TYR A 354 1 11 HELIX 15 15 GLY A 364 HIS A 375 1 12 HELIX 16 16 ASP A 389 ALA A 406 1 18 HELIX 17 17 ALA A 443 GLN A 450 1 8 HELIX 18 18 ARG A 474 LEU A 480 1 7 HELIX 19 19 PRO A 489 ILE A 494 5 6 HELIX 20 20 ASN A 497 ALA A 499 5 3 HELIX 21 21 ILE A 500 PHE A 508 1 9 HELIX 22 22 ASP B 29 LEU B 33 5 5 HELIX 23 23 GLN B 36 ASP B 40 5 5 HELIX 24 24 GLN B 58 GLY B 72 1 15 HELIX 25 25 MET B 80 LEU B 87 5 8 HELIX 26 26 GLY B 123 LYS B 127 5 5 HELIX 27 27 ALA B 205 LYS B 210 5 6 HELIX 28 28 ASP B 231 GLY B 242 1 12 HELIX 29 29 GLU B 257 LYS B 283 1 27 HELIX 30 30 ASP B 284 ALA B 289 1 6 HELIX 31 31 LEU B 290 ASP B 292 5 3 HELIX 32 32 PRO B 294 ILE B 296 5 3 HELIX 33 33 LEU B 297 ARG B 309 1 13 HELIX 34 34 HIS B 310 MET B 312 5 3 HELIX 35 35 CYS B 338 LEU B 344 1 7 HELIX 36 36 LEU B 344 TYR B 354 1 11 HELIX 37 37 GLY B 364 HIS B 375 1 12 HELIX 38 38 ASP B 389 ALA B 406 1 18 HELIX 39 39 ALA B 443 ASP B 449 1 7 HELIX 40 40 GLN B 450 ARG B 452 5 3 HELIX 41 41 ARG B 474 LEU B 480 1 7 HELIX 42 42 PRO B 489 ILE B 494 5 6 HELIX 43 43 ALA B 499 PHE B 508 1 10 HELIX 44 44 ASN B 522 GLY B 529 1 8 SHEET 1 A 2 THR A 14 ALA A 19 0 SHEET 2 A 2 VAL A 23 SER A 27 -1 O ILE A 25 N LEU A 16 SHEET 1 B 2 ARG A 45 ILE A 48 0 SHEET 2 B 2 GLU A 51 HIS A 55 -1 O GLY A 54 N SER A 46 SHEET 1 C 3 VAL A 73 VAL A 74 0 SHEET 2 C 3 PHE A 89 GLU A 92 -1 O ARG A 91 N VAL A 74 SHEET 3 C 3 ASN A 97 PRO A 100 -1 O LEU A 99 N LEU A 90 SHEET 1 D 7 GLN A 102 PRO A 105 0 SHEET 2 D 7 ILE A 185 ILE A 190 -1 O ILE A 190 N GLN A 102 SHEET 3 D 7 LEU A 117 TRP A 120 -1 N ILE A 119 O GLY A 187 SHEET 4 D 7 HIS A 131 GLN A 137 -1 O ALA A 133 N LEU A 118 SHEET 5 D 7 LYS A 142 ALA A 146 -1 O ARG A 144 N GLN A 137 SHEET 6 D 7 ARG A 163 GLU A 170 -1 O ARG A 163 N ILE A 145 SHEET 7 D 7 CYS A 173 LYS A 177 -1 O THR A 175 N VAL A 168 SHEET 1 E 3 SER A 212 ARG A 215 0 SHEET 2 E 3 HIS A 251 THR A 256 -1 O THR A 254 N SER A 212 SHEET 3 E 3 LEU A 614 VAL A 617 1 O VAL A 617 N ILE A 255 SHEET 1 F 5 GLY A 325 ASN A 332 0 SHEET 2 F 5 THR A 314 ASP A 322 -1 N CYS A 320 O LYS A 327 SHEET 3 F 5 TYR A 580 VAL A 588 -1 O VAL A 583 N PHE A 319 SHEET 4 F 5 ASN A 591 ASP A 600 -1 O ARG A 598 N GLN A 582 SHEET 5 F 5 ASP A 610 GLU A 612 -1 O ASP A 610 N GLY A 599 SHEET 1 G 4 GLU A 409 ARG A 414 0 SHEET 2 G 4 PHE A 381 GLN A 386 1 N ILE A 384 O LEU A 413 SHEET 3 G 4 CYS A 437 LYS A 440 1 O CYS A 437 N HIS A 383 SHEET 4 G 4 LEU A 485 PHE A 487 1 O PHE A 487 N VAL A 438 SHEET 1 H 2 GLY A 420 TRP A 421 0 SHEET 2 H 2 LEU A 427 ILE A 428 -1 O ILE A 428 N GLY A 420 SHEET 1 I 3 THR A 517 ASP A 518 0 SHEET 2 I 3 ILE A 566 GLN A 568 -1 O TYR A 567 N ASP A 518 SHEET 3 I 3 ALA A 531 LYS A 533 -1 N LYS A 533 O ILE A 566 SHEET 1 J 2 THR B 14 ALA B 19 0 SHEET 2 J 2 VAL B 23 SER B 27 -1 O VAL B 23 N ALA B 19 SHEET 1 K 2 ARG B 45 ILE B 48 0 SHEET 2 K 2 GLU B 51 HIS B 55 -1 O GLY B 54 N SER B 46 SHEET 1 L 3 VAL B 73 VAL B 74 0 SHEET 2 L 3 PHE B 89 GLU B 92 -1 O ARG B 91 N VAL B 74 SHEET 3 L 3 ASN B 97 PRO B 100 -1 O LEU B 99 N LEU B 90 SHEET 1 M 7 GLN B 102 PRO B 105 0 SHEET 2 M 7 ILE B 185 ILE B 190 -1 O ILE B 190 N GLN B 102 SHEET 3 M 7 LEU B 117 TRP B 120 -1 N ILE B 119 O GLY B 187 SHEET 4 M 7 HIS B 131 HIS B 139 -1 O ALA B 133 N LEU B 118 SHEET 5 M 7 LYS B 142 ALA B 146 -1 O ARG B 144 N GLN B 137 SHEET 6 M 7 ARG B 163 GLU B 170 -1 O LEU B 165 N VAL B 143 SHEET 7 M 7 CYS B 173 LYS B 177 -1 O THR B 175 N VAL B 168 SHEET 1 N 3 SER B 212 ARG B 215 0 SHEET 2 N 3 HIS B 251 THR B 256 -1 O THR B 254 N SER B 212 SHEET 3 N 3 LEU B 614 VAL B 617 1 O VAL B 617 N ILE B 255 SHEET 1 O 5 GLY B 325 ASN B 332 0 SHEET 2 O 5 THR B 314 ASP B 322 -1 N ASP B 318 O TYR B 329 SHEET 3 O 5 TYR B 580 VAL B 588 -1 O THR B 585 N MET B 317 SHEET 4 O 5 ASN B 591 ASP B 600 -1 O CYS B 596 N CYS B 584 SHEET 5 O 5 ILE B 611 GLU B 612 -1 O GLU B 612 N LEU B 597 SHEET 1 P 4 GLU B 409 ARG B 414 0 SHEET 2 P 4 PHE B 381 GLN B 386 1 N ILE B 384 O LEU B 413 SHEET 3 P 4 CYS B 437 LYS B 440 1 O CYS B 437 N HIS B 383 SHEET 4 P 4 LEU B 485 PHE B 487 1 O PHE B 487 N VAL B 438 SHEET 1 Q 2 GLY B 420 TRP B 421 0 SHEET 2 Q 2 LEU B 427 ILE B 428 -1 O ILE B 428 N GLY B 420 SHEET 1 R 4 THR B 517 ASP B 518 0 SHEET 2 R 4 ASN B 565 GLN B 569 -1 O TYR B 567 N ASP B 518 SHEET 3 R 4 TYR B 530 PRO B 534 -1 N ALA B 531 O GLN B 568 SHEET 4 R 4 ASP B 544 VAL B 546 -1 O VAL B 546 N TYR B 530 CISPEP 1 LYS A 56 TRP A 57 0 -8.44 CISPEP 2 PHE A 487 GLU A 488 0 -1.70 CISPEP 3 LYS B 56 TRP B 57 0 -6.90 CISPEP 4 PHE B 487 GLU B 488 0 -0.89 CRYST1 149.267 92.964 108.296 90.00 109.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006699 0.000000 0.002356 0.00000 SCALE2 0.000000 0.010757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009788 0.00000