HEADER TRANSFERASE 27-MAY-06 2IU4 TITLE DIHYDROXYACETONE KINASE OPERON CO-ACTIVATOR DHA-DHAQ CAVEAT 2IU4 THR A 38 CBETA WRONG HAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROXYACETONE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHA-DHAQ; COMPND 5 EC: 2.7.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_COMMON: IL1403; SOURCE 4 ORGANISM_TAXID: 1358; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TRANSFERASE, LACTOCOCCUS LACTIS, DIHYDROXYACETONE, CO-ACTIVATOR, KEYWDS 2 KINASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SRINIVAS,S.CHRISTEN,U.BAUMANN,B.ERNI REVDAT 4 13-JUL-11 2IU4 1 VERSN REVDAT 3 24-FEB-09 2IU4 1 VERSN REVDAT 2 09-AUG-06 2IU4 1 JRNL FORMUL REVDAT 1 13-JUN-06 2IU4 0 JRNL AUTH S.CHRISTEN,A.SRINIVAS,P.BAHLER,A.ZELLER,D.PRIDMORE, JRNL AUTH 2 C.BIENIOSSEK,U.BAUMANN,B.ERNI JRNL TITL REGULATION OF THE DHA OPERON OF LACTOCOCCUS LACTIS: A JRNL TITL 2 DEVIATION FROM THE RULE FOLLOWED BY THE TETR FAMILY OF JRNL TITL 3 TRANSCRIPTION REGULATORS JRNL REF J.BIOL.CHEM. V. 281 23129 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16760471 JRNL DOI 10.1074/JBC.M603486200 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 76689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5181 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5093 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.710 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5261 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7131 ; 1.524 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 6.309 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;34.142 ;24.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 907 ;16.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;28.184 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 796 ; 0.201 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3911 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2708 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3705 ; 0.329 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 375 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.395 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3319 ; 1.363 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5232 ; 1.752 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2178 ; 2.682 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1897 ; 3.949 ; 5.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 332 3 REMARK 3 1 B 7 B 332 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1295 ; 0.09 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 1234 ; 0.53 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1295 ; 0.44 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 1234 ; 1.66 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): -44.3410 17.0530 17.9340 REMARK 3 T TENSOR REMARK 3 T11: -0.1709 T22: -0.1356 REMARK 3 T33: -0.1144 T12: -0.0549 REMARK 3 T13: -0.0070 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.5549 L22: 2.3268 REMARK 3 L33: 1.3587 L12: 0.4780 REMARK 3 L13: 0.0027 L23: 0.4797 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.0781 S13: -0.0604 REMARK 3 S21: 0.0045 S22: -0.0064 S23: -0.0764 REMARK 3 S31: 0.0750 S32: 0.0090 S33: -0.0231 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 332 REMARK 3 ORIGIN FOR THE GROUP (A): -46.4320 16.6520 -12.0000 REMARK 3 T TENSOR REMARK 3 T11: -0.1045 T22: -0.2141 REMARK 3 T33: -0.1266 T12: -0.0292 REMARK 3 T13: -0.0181 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.5881 L22: 1.6299 REMARK 3 L33: 1.3351 L12: 0.9082 REMARK 3 L13: 0.1693 L23: -0.1971 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: 0.0051 S13: -0.0699 REMARK 3 S21: -0.0782 S22: 0.0013 S23: -0.0382 REMARK 3 S31: 0.0681 S32: 0.0146 S33: -0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2IU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-06. REMARK 100 THE PDBE ID CODE IS EBI-28838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2154 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.390 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.54 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE, REMARK 280 PH 4.5, 2 M AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866026 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.85533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866026 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.71067 REMARK 290 SMTRY1 4 -0.500000 0.866026 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866026 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.71067 REMARK 290 SMTRY1 6 -0.500000 -0.866023 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866026 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.85533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PHE A 3 REMARK 465 TYR A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 MET B 1 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET A 266 OD1 ASN B 5 1.70 REMARK 500 NZ LYS A 290 OE2 GLU A 330 1.62 REMARK 500 CA HIS A 332 O HOH A 2163 1.98 REMARK 500 O HOH B 2047 O HOH B 2105 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2006 O HOH B 2125 4455 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 144 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 66 -129.13 -128.38 REMARK 500 HIS A 131 44.90 -147.12 REMARK 500 ASN A 140 47.24 73.80 REMARK 500 HIS A 142 67.11 -104.10 REMARK 500 VAL A 148 -141.10 -130.45 REMARK 500 CYS A 298 -123.86 45.72 REMARK 500 MET B 66 -131.28 -133.56 REMARK 500 HIS B 131 42.17 -154.00 REMARK 500 ASN B 140 55.87 74.62 REMARK 500 HIS B 142 67.58 -103.57 REMARK 500 VAL B 148 -140.65 -132.76 REMARK 500 PRO B 195 150.99 -37.31 REMARK 500 CYS B 298 -126.61 43.75 REMARK 500 TRP B 328 67.00 -150.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 2 PHE B 3 148.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 38 -26.7 R S CBETA WRONG HAND REMARK 500 PHE A 326 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1373 REMARK 900 REMARK 900 RELATED ID: 2IU6 RELATED DB: PDB REMARK 900 REGULATION OF THE DHA OPERON OF LACTOCOCCUS REMARK 900 LACTIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 13 ADDITIONAL N-TERMINAL AMINOACIDS THAT OCCUR NATURALLY REMARK 999 INCLUDED NAMELY MEFYNSTNEIPEE. THE PROTEIN IS C-TERMINAL REMARK 999 HEXA-HIS TAGGED DBREF 2IU4 A 1 13 PDB 2IU4 2IU4 1 13 DBREF 2IU4 A 14 328 UNP Q9CIW0 Q9CIW0_LACLA 1 315 DBREF 2IU4 A 329 336 PDB 2IU4 2IU4 329 336 DBREF 2IU4 B 1 13 PDB 2IU4 2IU4 1 13 DBREF 2IU4 B 14 328 UNP Q9CIW0 Q9CIW0_LACLA 1 315 DBREF 2IU4 B 329 336 PDB 2IU4 2IU4 329 336 SEQRES 1 A 336 MET GLU PHE TYR ASN SER THR ASN GLU ILE PRO GLU GLU SEQRES 2 A 336 MET LEU LYS GLY ILE ASP LEU THR TYR PRO GLN LEU THR SEQRES 3 A 336 TYR LEU PRO GLU THR GLY ILE LEU TYR ASP ASN THR TYR SEQRES 4 A 336 ASN GLU LYS THR VAL PRO ILE ILE SER GLY GLY GLY SER SEQRES 5 A 336 GLY HIS GLU PRO ALA HIS VAL GLY TYR VAL GLY SER GLY SEQRES 6 A 336 MET LEU ALA ALA ALA VAL THR GLY PRO LEU PHE ILE PRO SEQRES 7 A 336 PRO LYS SER LYS ASN ILE LEU LYS ALA ILE ARG GLN VAL SEQRES 8 A 336 ASN SER GLY LYS GLY VAL PHE VAL ILE ILE LYS ASN PHE SEQRES 9 A 336 GLU ALA ASP LEU LYS GLU PHE ASN GLU ALA ILE LYS GLU SEQRES 10 A 336 ALA ARG THR GLU GLY ILE ASP VAL ARG TYR ILE VAL SER SEQRES 11 A 336 HIS ASP ASP ILE SER VAL ASN ALA TYR ASN PHE HIS LYS SEQRES 12 A 336 ARG HIS ARG GLY VAL ALA GLY THR ILE LEU LEU HIS LYS SEQRES 13 A 336 ILE LEU GLY ALA PHE ALA LYS GLU GLY GLY SER ILE ASP SEQRES 14 A 336 GLU ILE GLU GLN LEU ALA LEU SER LEU SER PRO GLU ILE SEQRES 15 A 336 TYR THR LEU GLY VAL ALA LEU ALA PRO VAL HIS PHE PRO SEQRES 16 A 336 HIS GLN LYS THR SER PHE VAL LEU ALA GLU ASP GLU VAL SEQRES 17 A 336 SER PHE GLY ILE GLY ILE HIQ GLY GLU PRO GLY TYR ARG SEQRES 18 A 336 VAL GLU LYS PHE GLU GLY SER GLU ARG ILE ALA ILE GLU SEQRES 19 A 336 LEU VAL ASN LYS LEU LYS ALA GLU ILE ASN TRP GLN LYS SEQRES 20 A 336 LYS ALA ASN LYS ASN TYR ILE LEU LEU VAL ASN GLY LEU SEQRES 21 A 336 GLY SER THR THR LEU MET GLU LEU TYR SER PHE GLN TYR SEQRES 22 A 336 ASP VAL MET ARG LEU LEU GLU LEU GLU GLY LEU SER VAL SEQRES 23 A 336 LYS PHE CYS LYS VAL GLY ASN LEU MET THR SER CYS ASP SEQRES 24 A 336 MET SER GLY ILE SER LEU THR LEU CYS SER VAL LYS ASP SEQRES 25 A 336 PRO LYS TRP LEU ASP TYR LEU ASN VAL PRO THR GLY ALA SEQRES 26 A 336 PHE ALA TRP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 336 MET GLU PHE TYR ASN SER THR ASN GLU ILE PRO GLU GLU SEQRES 2 B 336 MET LEU LYS GLY ILE ASP LEU THR TYR PRO GLN LEU THR SEQRES 3 B 336 TYR LEU PRO GLU THR GLY ILE LEU TYR ASP ASN THR TYR SEQRES 4 B 336 ASN GLU LYS THR VAL PRO ILE ILE SER GLY GLY GLY SER SEQRES 5 B 336 GLY HIS GLU PRO ALA HIS VAL GLY TYR VAL GLY SER GLY SEQRES 6 B 336 MET LEU ALA ALA ALA VAL THR GLY PRO LEU PHE ILE PRO SEQRES 7 B 336 PRO LYS SER LYS ASN ILE LEU LYS ALA ILE ARG GLN VAL SEQRES 8 B 336 ASN SER GLY LYS GLY VAL PHE VAL ILE ILE LYS ASN PHE SEQRES 9 B 336 GLU ALA ASP LEU LYS GLU PHE ASN GLU ALA ILE LYS GLU SEQRES 10 B 336 ALA ARG THR GLU GLY ILE ASP VAL ARG TYR ILE VAL SER SEQRES 11 B 336 HIS ASP ASP ILE SER VAL ASN ALA TYR ASN PHE HIS LYS SEQRES 12 B 336 ARG HIS ARG GLY VAL ALA GLY THR ILE LEU LEU HIS LYS SEQRES 13 B 336 ILE LEU GLY ALA PHE ALA LYS GLU GLY GLY SER ILE ASP SEQRES 14 B 336 GLU ILE GLU GLN LEU ALA LEU SER LEU SER PRO GLU ILE SEQRES 15 B 336 TYR THR LEU GLY VAL ALA LEU ALA PRO VAL HIS PHE PRO SEQRES 16 B 336 HIS GLN LYS THR SER PHE VAL LEU ALA GLU ASP GLU VAL SEQRES 17 B 336 SER PHE GLY ILE GLY ILE HIQ GLY GLU PRO GLY TYR ARG SEQRES 18 B 336 VAL GLU LYS PHE GLU GLY SER GLU ARG ILE ALA ILE GLU SEQRES 19 B 336 LEU VAL ASN LYS LEU LYS ALA GLU ILE ASN TRP GLN LYS SEQRES 20 B 336 LYS ALA ASN LYS ASN TYR ILE LEU LEU VAL ASN GLY LEU SEQRES 21 B 336 GLY SER THR THR LEU MET GLU LEU TYR SER PHE GLN TYR SEQRES 22 B 336 ASP VAL MET ARG LEU LEU GLU LEU GLU GLY LEU SER VAL SEQRES 23 B 336 LYS PHE CYS LYS VAL GLY ASN LEU MET THR SER CYS ASP SEQRES 24 B 336 MET SER GLY ILE SER LEU THR LEU CYS SER VAL LYS ASP SEQRES 25 B 336 PRO LYS TRP LEU ASP TYR LEU ASN VAL PRO THR GLY ALA SEQRES 26 B 336 PHE ALA TRP LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2IU4 HIQ A 215 HIS MODIFIED HISTIDINE MODRES 2IU4 HIQ B 215 HIS MODIFIED HISTIDINE HET SO4 A1370 5 HET SO4 A1373 5 HET SO4 B1370 5 HET SO4 B1373 5 HET HIQ A 215 16 HET HIQ B 215 16 HETNAM SO4 SULFATE ION HETNAM HIQ 1-[1,2-DIHYDROXY-1-(HYDROXYMETHYL)ETHYL]-L- HETNAM 2 HIQ HISTIDINE FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 HIQ 2(C9 H15 N3 O5) FORMUL 5 HOH *338(H2 O) HELIX 1 1 PRO A 11 TYR A 22 1 12 HELIX 2 2 HIS A 58 TYR A 61 5 4 HELIX 3 3 LYS A 80 ASN A 92 1 13 HELIX 4 4 PHE A 104 GLU A 121 1 18 HELIX 5 5 ILE A 134 ASN A 140 1 7 HELIX 6 6 GLY A 150 GLU A 164 1 15 HELIX 7 7 SER A 167 SER A 179 1 13 HELIX 8 8 GLY A 227 ASN A 244 1 18 HELIX 9 9 TRP A 245 LYS A 248 5 4 HELIX 10 10 THR A 264 GLU A 282 1 19 HELIX 11 11 PRO A 313 VAL A 321 1 9 HELIX 12 12 PRO B 11 TYR B 22 1 12 HELIX 13 13 HIS B 58 TYR B 61 5 4 HELIX 14 14 LYS B 80 ASN B 92 1 13 HELIX 15 15 PHE B 104 GLU B 121 1 18 HELIX 16 16 ILE B 134 ASN B 140 1 7 HELIX 17 17 GLY B 150 GLU B 164 1 15 HELIX 18 18 SER B 167 SER B 179 1 13 HELIX 19 19 GLY B 227 ASN B 244 1 18 HELIX 20 20 TRP B 245 LYS B 248 5 4 HELIX 21 21 THR B 264 GLU B 282 1 19 HELIX 22 22 PRO B 313 VAL B 321 1 9 SHEET 1 AA 6 LEU A 25 LEU A 28 0 SHEET 2 AA 6 ILE A 33 ASP A 36 -1 O ILE A 33 N LEU A 28 SHEET 3 AA 6 ALA A 69 LEU A 75 -1 O ALA A 70 N LEU A 34 SHEET 4 AA 6 ILE A 46 SER A 52 1 O SER A 48 N VAL A 71 SHEET 5 AA 6 VAL A 97 LYS A 102 1 O PHE A 98 N ILE A 47 SHEET 6 AA 6 VAL A 125 SER A 130 1 O ARG A 126 N VAL A 99 SHEET 1 AB 6 ARG A 221 LYS A 224 0 SHEET 2 AB 6 GLU A 207 PHE A 210 -1 O VAL A 208 N GLU A 223 SHEET 3 AB 6 ILE A 182 ALA A 190 -1 O ALA A 188 N SER A 209 SHEET 4 AB 6 SER A 301 SER A 309 -1 O SER A 301 N LEU A 189 SHEET 5 AB 6 ASN A 252 GLY A 259 -1 O ILE A 254 N CYS A 308 SHEET 6 AB 6 SER A 285 GLY A 292 1 O SER A 285 N TYR A 253 SHEET 1 AC 2 HIS A 193 PHE A 194 0 SHEET 2 AC 2 LYS A 198 THR A 199 -1 O LYS A 198 N PHE A 194 SHEET 1 BA 6 LEU B 25 LEU B 28 0 SHEET 2 BA 6 ILE B 33 ASP B 36 -1 O ILE B 33 N LEU B 28 SHEET 3 BA 6 ALA B 69 LEU B 75 -1 O ALA B 70 N LEU B 34 SHEET 4 BA 6 ILE B 46 SER B 52 1 O SER B 48 N VAL B 71 SHEET 5 BA 6 VAL B 97 LYS B 102 1 O PHE B 98 N ILE B 47 SHEET 6 BA 6 VAL B 125 SER B 130 1 O ARG B 126 N VAL B 99 SHEET 1 BB 6 ARG B 221 LYS B 224 0 SHEET 2 BB 6 GLU B 207 PHE B 210 -1 O VAL B 208 N GLU B 223 SHEET 3 BB 6 ILE B 182 ALA B 190 -1 O ALA B 188 N SER B 209 SHEET 4 BB 6 SER B 301 SER B 309 -1 O SER B 301 N LEU B 189 SHEET 5 BB 6 ASN B 252 GLY B 259 -1 O ILE B 254 N CYS B 308 SHEET 6 BB 6 SER B 285 GLY B 292 1 O SER B 285 N TYR B 253 SHEET 1 BC 2 HIS B 193 PHE B 194 0 SHEET 2 BC 2 LYS B 198 THR B 199 -1 O LYS B 198 N PHE B 194 LINK C ILE A 214 N HIQ A 215 1555 1555 1.32 LINK C HIQ A 215 N GLY A 216 1555 1555 1.33 LINK C ILE B 214 N HIQ B 215 1555 1555 1.33 LINK C HIQ B 215 N GLY B 216 1555 1555 1.33 CISPEP 1 GLU A 55 PRO A 56 0 10.73 CISPEP 2 ALA A 57 HIS A 58 0 6.22 CISPEP 3 GLU B 55 PRO B 56 0 9.13 CISPEP 4 ALA B 57 HIS B 58 0 -3.49 SITE 1 AC1 10 PHE A 104 ARG A 146 GLY A 213 ILE A 214 SITE 2 AC1 10 HIQ A 215 GLY A 216 GLU A 217 HOH A2164 SITE 3 AC1 10 HOH A2165 HOH A2166 SITE 1 AC2 8 THR A 43 VAL A 44 ILE A 46 GLY A 65 SITE 2 AC2 8 MET A 66 ALA A 68 GLY A 159 HOH A2167 SITE 1 AC3 8 PHE B 104 ARG B 146 GLY B 213 ILE B 214 SITE 2 AC3 8 HIQ B 215 GLY B 216 GLU B 217 HOH B2113 SITE 1 AC4 8 THR B 43 VAL B 44 PRO B 45 ILE B 46 SITE 2 AC4 8 MET B 66 ALA B 68 GLY B 159 HOH B2022 CRYST1 99.897 99.897 188.566 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010010 0.005779 0.000000 0.00000 SCALE2 0.000000 0.011559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005303 0.00000