HEADER REPLICATION 05-JUL-06 2IX2 TITLE CRYSTAL STRUCTURE OF THE HETEROTRIMERIC PCNA FROM SULFOLOBUS TITLE 2 SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE SLIDING CLAMP B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG B, PCNA B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA POLYMERASE SLIDING CLAMP C; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG C, PCNA C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA POLYMERASE SLIDING CLAMP A; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: PROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG A, PCNA A; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 8 ORGANISM_TAXID: 2287; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 13 ORGANISM_TAXID: 2287; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION, SULFOLOBUS SULFATARICUS, PCNA, DNA-BINDING, DNA KEYWDS 2 REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR G.J.WILLIAMS,K.JOHNSON,S.A.MCMAHON,L.CARTER,M.OKE,H.LIU,G.L.TAYLOR, AUTHOR 2 M.F.WHITE,J.H.NAISMITH REVDAT 5 13-DEC-23 2IX2 1 REMARK REVDAT 4 13-JUL-11 2IX2 1 VERSN REVDAT 3 24-FEB-09 2IX2 1 VERSN REVDAT 2 20-DEC-06 2IX2 1 JRNL REVDAT 1 04-OCT-06 2IX2 0 JRNL AUTH G.J.WILLIAMS,K.JOHNSON,J.RUDOLF,S.A.MCMAHON,L.CARTER,M.OKE, JRNL AUTH 2 H.LIU,G.L.TAYLOR,M.F.WHITE,J.H.NAISMITH JRNL TITL STRUCTURE OF THE HETEROTRIMERIC PCNA FROM SULFOLOBUS JRNL TITL 2 SOLFATARICUS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 62 944 2006 JRNL REFN ESSN 1744-3091 JRNL PMID 17012780 JRNL DOI 10.1107/S1744309106034075 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 38050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2026 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2909 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5665 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7648 ; 1.355 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 703 ; 6.193 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;36.371 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1045 ;16.881 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 907 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4136 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2272 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3838 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 253 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3672 ; 0.629 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5748 ; 0.992 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2247 ; 1.694 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1900 ; 2.670 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0131 0.2360 51.2835 REMARK 3 T TENSOR REMARK 3 T11: 0.2183 T22: 0.4189 REMARK 3 T33: -0.0461 T12: 0.0495 REMARK 3 T13: 0.0258 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 2.2543 L22: 4.4679 REMARK 3 L33: 1.9177 L12: 2.7425 REMARK 3 L13: 0.2893 L23: 1.2571 REMARK 3 S TENSOR REMARK 3 S11: 0.1650 S12: -0.2653 S13: -0.0015 REMARK 3 S21: 0.1535 S22: -0.0495 S23: -0.2166 REMARK 3 S31: -0.3696 S32: 0.4061 S33: -0.1155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1831 -32.0107 22.5217 REMARK 3 T TENSOR REMARK 3 T11: -0.1635 T22: -0.2451 REMARK 3 T33: -0.0977 T12: 0.0206 REMARK 3 T13: -0.0621 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.2969 L22: 2.3891 REMARK 3 L33: 4.0932 L12: -0.0753 REMARK 3 L13: -1.2734 L23: 0.1742 REMARK 3 S TENSOR REMARK 3 S11: -0.1197 S12: -0.3407 S13: -0.0694 REMARK 3 S21: 0.5066 S22: 0.1007 S23: 0.1526 REMARK 3 S31: 0.2353 S32: -0.0674 S33: 0.0190 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 259 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5859 -0.2637 12.9295 REMARK 3 T TENSOR REMARK 3 T11: -0.2650 T22: -0.1667 REMARK 3 T33: -0.0930 T12: -0.0223 REMARK 3 T13: -0.0350 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.3245 L22: 5.4551 REMARK 3 L33: 2.0859 L12: -0.0126 REMARK 3 L13: -0.3555 L23: 1.7295 REMARK 3 S TENSOR REMARK 3 S11: 0.1380 S12: -0.3265 S13: 0.0213 REMARK 3 S21: 0.5444 S22: -0.0457 S23: -0.3378 REMARK 3 S31: -0.0300 S32: 0.2054 S33: -0.0923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43983 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UD9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.39900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 84 REMARK 465 LYS A 85 REMARK 465 GLU A 93 REMARK 465 THR A 94 REMARK 465 ALA A 117 REMARK 465 GLU A 118 REMARK 465 LYS A 119 REMARK 465 GLY A 120 REMARK 465 GLN A 121 REMARK 465 VAL A 122 REMARK 465 GLU A 123 REMARK 465 GLN A 124 REMARK 465 LEU A 125 REMARK 465 THR A 126 REMARK 465 GLU A 127 REMARK 465 PRO A 128 REMARK 465 LYS A 129 REMARK 465 VAL A 130 REMARK 465 GLU A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 LYS A 175 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 TYR C 3 REMARK 465 LEU C 4 REMARK 465 LYS C 5 REMARK 465 SER C 6 REMARK 465 PHE C 7 REMARK 465 GLU C 8 REMARK 465 ARG C 9 REMARK 465 GLY C 183 REMARK 465 GLU C 184 REMARK 465 SER C 185 REMARK 465 GLU C 186 REMARK 465 SER C 192 REMARK 465 LYS C 193 REMARK 465 ASP C 194 REMARK 465 THR C 195 REMARK 465 GLY C 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 SER A 107 OG REMARK 470 SER A 191 OG REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 SER B 91 OG REMARK 470 SER B 95 OG REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 84 CD LYS B 84 CE 0.237 REMARK 500 LYS B 84 CE LYS B 84 NZ 0.333 REMARK 500 GLU C 69 CD GLU C 69 OE1 0.137 REMARK 500 GLU C 69 CD GLU C 69 OE2 0.090 REMARK 500 HIS C 173 CG HIS C 173 CD2 0.081 REMARK 500 ASP C 175 CG ASP C 175 OD1 0.319 REMARK 500 ARG C 176 CD ARG C 176 NE 0.117 REMARK 500 ARG C 176 NE ARG C 176 CZ 0.197 REMARK 500 ARG C 176 CZ ARG C 176 NH2 0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 84 CD - CE - NZ ANGL. DEV. = -18.7 DEGREES REMARK 500 ARG C 176 CD - NE - CZ ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG C 176 NH1 - CZ - NH2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG C 176 NE - CZ - NH2 ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 107.37 -174.55 REMARK 500 SER A 64 135.69 -171.94 REMARK 500 THR A 138 -150.30 -149.14 REMARK 500 GLU A 163 -103.28 60.85 REMARK 500 ASP A 184 9.02 57.33 REMARK 500 LYS A 185 66.71 -158.74 REMARK 500 GLU A 225 106.97 -57.76 REMARK 500 GLU B 57 43.18 -83.44 REMARK 500 ASP B 85 -8.54 87.58 REMARK 500 GLU B 159 49.61 36.45 REMARK 500 SER B 171 141.08 -170.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IZO RELATED DB: PDB REMARK 900 STRUCTURE OF AN ARCHAEAL PCNA1-PCNA2-FEN1 COMPLEX DBREF 2IX2 A 1 249 UNP P57766 PCNA2_SULSO 1 249 DBREF 2IX2 B 1 245 UNP Q97Z84 PCNA3_SULSO 1 245 DBREF 2IX2 C 1 15 PDB 2IX2 2IX2 1 15 DBREF 2IX2 C 16 259 UNP P57765 PCNA1_SULSO 1 244 SEQRES 1 A 249 MET PHE LYS ILE VAL TYR PRO ASN ALA LYS ASP PHE PHE SEQRES 2 A 249 SER PHE ILE ASN SER ILE THR ASN VAL THR ASP SER ILE SEQRES 3 A 249 ILE LEU ASN PHE THR GLU ASP GLY ILE PHE SER ARG HIS SEQRES 4 A 249 LEU THR GLU ASP LYS VAL LEU MET ALA ILE MET ARG ILE SEQRES 5 A 249 PRO LYS ASP VAL LEU SER GLU TYR SER ILE ASP SER PRO SEQRES 6 A 249 THR SER VAL LYS LEU ASP VAL SER SER VAL LYS LYS ILE SEQRES 7 A 249 LEU SER LYS ALA SER SER LYS LYS ALA THR ILE GLU LEU SEQRES 8 A 249 THR GLU THR ASP SER GLY LEU LYS ILE ILE ILE ARG ASP SEQRES 9 A 249 GLU LYS SER GLY ALA LYS SER THR ILE TYR ILE LYS ALA SEQRES 10 A 249 GLU LYS GLY GLN VAL GLU GLN LEU THR GLU PRO LYS VAL SEQRES 11 A 249 ASN LEU ALA VAL ASN PHE THR THR ASP GLU SER VAL LEU SEQRES 12 A 249 ASN VAL ILE ALA ALA ASP VAL THR LEU VAL GLY GLU GLU SEQRES 13 A 249 MET ARG ILE SER THR GLU GLU ASP LYS ILE LYS ILE GLU SEQRES 14 A 249 ALA GLY GLU GLU GLY LYS ARG TYR VAL ALA PHE LEU MET SEQRES 15 A 249 LYS ASP LYS PRO LEU LYS GLU LEU SER ILE ASP THR SER SEQRES 16 A 249 ALA SER SER SER TYR SER ALA GLU MET PHE LYS ASP ALA SEQRES 17 A 249 VAL LYS GLY LEU ARG GLY PHE SER ALA PRO THR MET VAL SEQRES 18 A 249 SER PHE GLY GLU ASN LEU PRO MET LYS ILE ASP VAL GLU SEQRES 19 A 249 ALA VAL SER GLY GLY HIS MET ILE PHE TRP ILE ALA PRO SEQRES 20 A 249 ARG LEU SEQRES 1 B 245 MET LYS ALA LYS VAL ILE ASP ALA VAL SER PHE SER TYR SEQRES 2 B 245 ILE LEU ARG THR VAL GLY ASP PHE LEU SER GLU ALA ASN SEQRES 3 B 245 PHE ILE VAL THR LYS GLU GLY ILE ARG VAL SER GLY ILE SEQRES 4 B 245 ASP PRO SER ARG VAL VAL PHE LEU ASP ILE PHE LEU PRO SEQRES 5 B 245 SER SER TYR PHE GLU GLY PHE GLU VAL SER GLN GLU LYS SEQRES 6 B 245 GLU ILE ILE GLY PHE LYS LEU GLU ASP VAL ASN ASP ILE SEQRES 7 B 245 LEU LYS ARG VAL LEU LYS ASP ASP THR LEU ILE LEU SER SEQRES 8 B 245 SER ASN GLU SER LYS LEU THR LEU THR PHE ASP GLY GLU SEQRES 9 B 245 PHE THR ARG SER PHE GLU LEU PRO LEU ILE GLN VAL GLU SEQRES 10 B 245 SER THR GLN PRO PRO SER VAL ASN LEU GLU PHE PRO PHE SEQRES 11 B 245 LYS ALA GLN LEU LEU THR ILE THR PHE ALA ASP ILE ILE SEQRES 12 B 245 ASP GLU LEU SER ASP LEU GLY GLU VAL LEU ASN ILE HIS SEQRES 13 B 245 SER LYS GLU ASN LYS LEU TYR PHE GLU VAL ILE GLY ASP SEQRES 14 B 245 LEU SER THR ALA LYS VAL GLU LEU SER THR ASP ASN GLY SEQRES 15 B 245 THR LEU LEU GLU ALA SER GLY ALA ASP VAL SER SER SER SEQRES 16 B 245 TYR GLY MET GLU TYR VAL ALA ASN THR THR LYS MET ARG SEQRES 17 B 245 ARG ALA SER ASP SER MET GLU LEU TYR PHE GLY SER GLN SEQRES 18 B 245 ILE PRO LEU LYS LEU ARG PHE LYS LEU PRO GLN GLU GLY SEQRES 19 B 245 TYR GLY ASP PHE TYR ILE ALA PRO ARG ALA ASP SEQRES 1 C 259 MET ILE TYR LEU LYS SER PHE GLU ARG ASN ILE ARG LEU SEQRES 2 C 259 ILE ASN MET LYS VAL VAL TYR ASP ASP VAL ARG VAL LEU SEQRES 3 C 259 LYS ASP ILE ILE GLN ALA LEU ALA ARG LEU VAL ASP GLU SEQRES 4 C 259 ALA VAL LEU LYS PHE LYS GLN ASP SER VAL GLU LEU VAL SEQRES 5 C 259 ALA LEU ASP ARG ALA HIS ILE SER LEU ILE SER VAL ASN SEQRES 6 C 259 LEU PRO ARG GLU MET PHE LYS GLU TYR ASP VAL ASN ASP SEQRES 7 C 259 GLU PHE LYS PHE GLY PHE ASN THR GLN TYR LEU MET LYS SEQRES 8 C 259 ILE LEU LYS VAL ALA LYS ARG LYS GLU ALA ILE GLU ILE SEQRES 9 C 259 ALA SER GLU SER PRO ASP SER VAL ILE ILE ASN ILE ILE SEQRES 10 C 259 GLY SER THR ASN ARG GLU PHE ASN VAL ARG ASN LEU GLU SEQRES 11 C 259 VAL SER GLU GLN GLU ILE PRO GLU ILE ASN LEU GLN PHE SEQRES 12 C 259 ASP ILE SER ALA THR ILE SER SER ASP GLY PHE LYS SER SEQRES 13 C 259 ALA ILE SER GLU VAL SER THR VAL THR ASP ASN VAL VAL SEQRES 14 C 259 VAL GLU GLY HIS GLU ASP ARG ILE LEU ILE LYS ALA GLU SEQRES 15 C 259 GLY GLU SER GLU VAL GLU VAL GLU PHE SER LYS ASP THR SEQRES 16 C 259 GLY GLY LEU GLN ASP LEU GLU PHE SER LYS GLU SER LYS SEQRES 17 C 259 ASN SER TYR SER ALA GLU TYR LEU ASP ASP VAL LEU SER SEQRES 18 C 259 LEU THR LYS LEU SER ASP TYR VAL LYS ILE SER PHE GLY SEQRES 19 C 259 ASN GLN LYS PRO LEU GLN LEU PHE PHE ASN MET GLU GLY SEQRES 20 C 259 GLY GLY LYS VAL THR TYR LEU LEU ALA PRO LYS VAL FORMUL 4 HOH *120(H2 O) HELIX 1 1 ASN A 8 ILE A 19 1 12 HELIX 2 2 ASP A 55 LEU A 57 5 3 HELIX 3 3 VAL A 72 SER A 83 1 12 HELIX 4 4 ASP A 139 GLY A 154 1 16 HELIX 5 5 ALA A 202 GLY A 211 1 10 HELIX 6 6 ASP B 7 LEU B 22 1 16 HELIX 7 7 SER B 54 PHE B 56 5 3 HELIX 8 8 LEU B 72 LYS B 80 1 9 HELIX 9 9 THR B 136 SER B 147 1 12 HELIX 10 10 MET B 198 ASN B 203 1 6 HELIX 11 11 THR B 204 ALA B 210 5 7 HELIX 12 12 PRO B 231 GLU B 233 5 3 HELIX 13 13 ASP C 22 VAL C 37 1 16 HELIX 14 14 GLU C 69 PHE C 71 5 3 HELIX 15 15 THR C 86 ALA C 96 1 11 HELIX 16 16 SER C 151 THR C 163 1 13 HELIX 17 17 ALA C 213 VAL C 219 1 7 HELIX 18 18 LEU C 220 LEU C 225 5 6 SHEET 1 AA 9 GLU A 59 SER A 61 0 SHEET 2 AA 9 LYS A 3 TYR A 6 -1 O LYS A 3 N SER A 61 SHEET 3 AA 9 ALA A 87 LEU A 91 -1 O ILE A 89 N TYR A 6 SHEET 4 AA 9 LEU A 98 ASP A 104 -1 O ILE A 101 N GLU A 90 SHEET 5 AA 9 LYS A 110 ILE A 115 -1 O SER A 111 N ILE A 102 SHEET 6 AA 9 GLU C 188 PHE C 191 -1 O GLU C 188 N THR A 112 SHEET 7 AA 9 ILE C 177 LYS C 180 -1 O ILE C 177 N PHE C 191 SHEET 8 AA 9 ASN C 167 GLY C 172 -1 O VAL C 169 N LYS C 180 SHEET 9 AA 9 SER C 207 SER C 212 -1 O SER C 207 N GLY C 172 SHEET 1 AB 9 THR A 66 ASP A 71 0 SHEET 2 AB 9 SER A 25 THR A 31 -1 O ILE A 26 N LEU A 70 SHEET 3 AB 9 GLY A 34 LEU A 40 -1 O GLY A 34 N THR A 31 SHEET 4 AB 9 LEU A 46 PRO A 53 -1 O ALA A 48 N HIS A 39 SHEET 5 AB 9 HIS A 240 ILE A 245 -1 O HIS A 240 N ARG A 51 SHEET 6 AB 9 MET A 229 GLU A 234 -1 O MET A 229 N ILE A 245 SHEET 7 AB 9 THR A 219 PHE A 223 -1 O MET A 220 N ASP A 232 SHEET 8 AB 9 VAL A 134 THR A 138 -1 O VAL A 134 N PHE A 223 SHEET 9 AB 9 GLU A 189 ILE A 192 -1 O GLU A 189 N THR A 137 SHEET 1 AC 5 PRO A 186 LEU A 187 0 SHEET 2 AC 5 TYR A 177 LYS A 183 1 O MET A 182 N LEU A 187 SHEET 3 AC 5 LYS A 165 ALA A 170 -1 O ILE A 166 N LEU A 181 SHEET 4 AC 5 GLU A 156 GLU A 162 -1 O ARG A 158 N GLU A 169 SHEET 5 AC 5 SER A 197 SER A 201 -1 O SER A 198 N ILE A 159 SHEET 1 AD 7 PRO A 186 LEU A 187 0 SHEET 2 AD 7 TYR A 177 LYS A 183 1 O MET A 182 N LEU A 187 SHEET 3 AD 7 THR B 106 PRO B 112 -1 O THR B 106 N PHE A 180 SHEET 4 AD 7 LYS B 96 ASP B 102 -1 O LEU B 97 N LEU B 111 SHEET 5 AD 7 THR B 87 SER B 92 -1 O THR B 87 N ASP B 102 SHEET 6 AD 7 LYS B 2 VAL B 5 -1 O ALA B 3 N LEU B 90 SHEET 7 AD 7 PHE B 59 GLU B 60 -1 O GLU B 60 N LYS B 2 SHEET 1 BA 9 GLU B 66 LYS B 71 0 SHEET 2 BA 9 GLU B 24 THR B 30 -1 O ALA B 25 N PHE B 70 SHEET 3 BA 9 GLY B 33 ILE B 39 -1 O GLY B 33 N THR B 30 SHEET 4 BA 9 VAL B 45 PRO B 52 -1 O LEU B 47 N GLY B 38 SHEET 5 BA 9 TYR B 235 ILE B 240 -1 O TYR B 235 N PHE B 50 SHEET 6 BA 9 ILE B 222 LYS B 229 -1 O LEU B 224 N ILE B 240 SHEET 7 BA 9 SER B 213 GLY B 219 -1 O SER B 213 N LYS B 229 SHEET 8 BA 9 PHE B 130 LEU B 135 -1 O PHE B 130 N PHE B 218 SHEET 9 BA 9 GLU B 186 GLY B 189 -1 O GLU B 186 N GLN B 133 SHEET 1 BB 9 SER B 193 GLY B 197 0 SHEET 2 BB 9 VAL B 152 LYS B 158 -1 O LEU B 153 N TYR B 196 SHEET 3 BB 9 LYS B 161 ILE B 167 -1 O LYS B 161 N LYS B 158 SHEET 4 BB 9 SER B 171 LEU B 177 -1 O ALA B 173 N VAL B 166 SHEET 5 BB 9 ARG C 122 ARG C 127 -1 O GLU C 123 N LYS B 174 SHEET 6 BB 9 SER C 111 ILE C 116 -1 O VAL C 112 N VAL C 126 SHEET 7 BB 9 ILE C 102 SER C 108 -1 O GLU C 103 N ASN C 115 SHEET 8 BB 9 MET C 16 TYR C 20 -1 O MET C 16 N SER C 106 SHEET 9 BB 9 GLU C 73 VAL C 76 -1 O GLU C 73 N VAL C 19 SHEET 1 CA 9 PHE C 80 ASN C 85 0 SHEET 2 CA 9 GLU C 39 PHE C 44 -1 O ALA C 40 N PHE C 84 SHEET 3 CA 9 SER C 48 LEU C 54 -1 O GLU C 50 N LYS C 43 SHEET 4 CA 9 SER C 60 PRO C 67 -1 O ILE C 62 N ALA C 53 SHEET 5 CA 9 LYS C 250 LEU C 255 -1 O LYS C 250 N ASN C 65 SHEET 6 CA 9 LYS C 237 ASN C 244 -1 O LEU C 239 N LEU C 255 SHEET 7 CA 9 TYR C 228 GLY C 234 -1 O TYR C 228 N ASN C 244 SHEET 8 CA 9 ILE C 145 SER C 150 -1 O ILE C 145 N PHE C 233 SHEET 9 CA 9 LEU C 198 PHE C 203 -1 N GLN C 199 O THR C 148 CISPEP 1 LYS A 185 PRO A 186 0 -3.27 CRYST1 44.808 78.798 125.611 90.00 100.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022317 0.000000 0.004140 0.00000 SCALE2 0.000000 0.012691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008097 0.00000