HEADER ISOMERASE 08-JUL-06 2IXH TITLE RMLC P AERUGINOSA WITH DTDP-RHAMNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTDP-4-KETO-6-DEOXYGLUCOSE 3,5-EPIMERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOMERASE, LIPOPOLYSACCHARIDE BIOSYNTHESIS, EPIMERISE, EPIMERASE, KEYWDS 2 EPIMERIZE EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,J.H.NAISMITH REVDAT 5 06-JUN-18 2IXH 1 JRNL REMARK REVDAT 4 13-JUL-11 2IXH 1 VERSN REVDAT 3 24-FEB-09 2IXH 1 VERSN REVDAT 2 06-DEC-06 2IXH 1 JRNL REVDAT 1 26-OCT-06 2IXH 0 JRNL AUTH C.DONG,L.L.MAJOR,V.SRIKANNATHASAN,J.C.ERREY,M.F.GIRAUD, JRNL AUTH 2 J.S.LAM,M.GRANINGER,P.MESSNER,M.R.MCNEIL,R.A.FIELD, JRNL AUTH 3 C.WHITFIELD,J.H.NAISMITH JRNL TITL RMLC, A C3' AND C5' CARBOHYDRATE EPIMERASE, APPEARS TO JRNL TITL 2 OPERATE VIA AN INTERMEDIATE WITH AN UNUSUAL TWIST BOAT JRNL TITL 3 CONFORMATION. JRNL REF J. MOL. BIOL. V. 365 146 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17046787 JRNL DOI 10.1016/J.JMB.2006.09.063 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2128 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 590 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.03000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : -3.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3140 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2180 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4266 ; 1.116 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5226 ; 0.808 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.580 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;30.566 ;22.892 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 484 ;13.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3506 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 722 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 482 ; 0.182 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2121 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1422 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1597 ; 0.077 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 297 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 125 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 88 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2390 ; 0.548 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2936 ; 0.609 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1577 ; 0.917 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1330 ; 1.329 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5611 19.8578 16.7919 REMARK 3 T TENSOR REMARK 3 T11: -0.1030 T22: 0.0005 REMARK 3 T33: 0.0124 T12: -0.0546 REMARK 3 T13: 0.0122 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.2551 L22: 1.5895 REMARK 3 L33: 2.8857 L12: 0.2110 REMARK 3 L13: 0.6157 L23: -0.4548 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: 0.2886 S13: 0.0679 REMARK 3 S21: -0.1902 S22: 0.0732 S23: -0.1256 REMARK 3 S31: -0.1095 S32: 0.5403 S33: 0.0354 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 184 REMARK 3 ORIGIN FOR THE GROUP (A): 45.7860 9.6419 98.9419 REMARK 3 T TENSOR REMARK 3 T11: -0.0704 T22: -0.1567 REMARK 3 T33: -0.1242 T12: 0.1734 REMARK 3 T13: -0.0545 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.9441 L22: 1.2157 REMARK 3 L33: 5.3856 L12: -0.3826 REMARK 3 L13: 0.5685 L23: 0.0169 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.0772 S13: 0.0382 REMARK 3 S21: -0.2430 S22: -0.1883 S23: 0.1577 REMARK 3 S31: -0.9936 S32: -0.6868 S33: 0.1585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30581 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.68300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.68300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.45750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.76850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.45750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.76850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.68300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.45750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.76850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.68300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.45750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.76850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.68300 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 218.73200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2042 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2128 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2045 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2151 O HOH B 2265 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2169 O HOH A 2169 3555 1.76 REMARK 500 O HOH A 2080 O HOH B 2206 3656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 -115.52 -160.44 REMARK 500 LYS A 110 16.57 59.16 REMARK 500 PRO B 160 58.90 -68.94 REMARK 500 GLN B 162 -73.67 -24.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2011 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A2014 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2017 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2018 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A2022 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A2030 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH A2031 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH A2041 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A2042 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A2049 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2051 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A2064 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH A2065 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A2073 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A2086 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2107 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A2115 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A2131 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B2003 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B2007 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B2010 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B2011 DISTANCE = 9.25 ANGSTROMS REMARK 525 HOH B2012 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B2022 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B2023 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B2024 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B2037 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH B2039 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B2040 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH B2044 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B2045 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH B2056 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B2058 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B2060 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B2061 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2065 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B2066 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B2067 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH B2068 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH B2083 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B2084 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2112 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B2123 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B2135 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH B2146 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B2158 DISTANCE = 6.01 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRH A1185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRH B1185 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RTV RELATED DB: PDB REMARK 900 RMLC (DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3, 5-EPIMERASE) REMARK 900 CRYSTALSTRUCTURE FROM PSEUDOMONAS AERUGINOSA, APO STRUCTURE REMARK 900 RELATED ID: 2IXI RELATED DB: PDB REMARK 900 RMLC P AUERGINOSA WITHG DTDP-XYLOSE REMARK 900 RELATED ID: 2IXJ RELATED DB: PDB REMARK 900 RMLC P AUERGINOSA NATIVE REMARK 900 RELATED ID: 2IXK RELATED DB: PDB REMARK 900 RMLC P AUERGINOSA WITHG DTDP-4-KETO RHAMNNOSE (THE PRODUCT OF THE REMARK 900 REACTION) REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXTRA S AT N-TERMINUS CLONING ARTEFACT DBREF 2IXH A 1 3 PDB 2IXH 2IXH 1 3 DBREF 2IXH A 4 184 UNP Q9HU21 Q9HU21_PSEAE 1 181 DBREF 2IXH B 1 3 PDB 2IXH 2IXH 1 3 DBREF 2IXH B 4 184 UNP Q9HU21 Q9HU21_PSEAE 1 181 SEQRES 1 A 184 SER MET ALA MET LYS ALA THR ARG LEU ALA ILE PRO ASP SEQRES 2 A 184 VAL ILE LEU PHE GLU PRO ARG VAL PHE GLY ASP ASP ARG SEQRES 3 A 184 GLY PHE PHE PHE GLU SER TYR ASN GLN ARG ALA PHE GLU SEQRES 4 A 184 GLU ALA CYS GLY HIS PRO VAL SER PHE VAL GLN ASP ASN SEQRES 5 A 184 HIS SER ARG SER ALA ARG GLY VAL LEU ARG GLY LEU HIS SEQRES 6 A 184 TYR GLN ILE ARG GLN ALA GLN GLY LYS LEU VAL ARG ALA SEQRES 7 A 184 THR LEU GLY GLU VAL PHE ASP VAL ALA VAL ASP LEU ARG SEQRES 8 A 184 ARG GLY SER PRO THR PHE GLY GLN TRP VAL GLY GLU ARG SEQRES 9 A 184 LEU SER ALA GLU ASN LYS ARG GLN MET TRP ILE PRO ALA SEQRES 10 A 184 GLY PHE ALA HIS GLY PHE VAL VAL LEU SER GLU TYR ALA SEQRES 11 A 184 GLU PHE LEU TYR LYS THR THR ASP PHE TRP ALA PRO GLU SEQRES 12 A 184 HIS GLU ARG CYS ILE VAL TRP ASN ASP PRO GLU LEU LYS SEQRES 13 A 184 ILE ASP TRP PRO LEU GLN ASP ALA PRO LEU LEU SER GLU SEQRES 14 A 184 LYS ASP ARG GLN GLY LYS ALA PHE ALA ASP ALA ASP CYS SEQRES 15 A 184 PHE PRO SEQRES 1 B 184 SER MET ALA MET LYS ALA THR ARG LEU ALA ILE PRO ASP SEQRES 2 B 184 VAL ILE LEU PHE GLU PRO ARG VAL PHE GLY ASP ASP ARG SEQRES 3 B 184 GLY PHE PHE PHE GLU SER TYR ASN GLN ARG ALA PHE GLU SEQRES 4 B 184 GLU ALA CYS GLY HIS PRO VAL SER PHE VAL GLN ASP ASN SEQRES 5 B 184 HIS SER ARG SER ALA ARG GLY VAL LEU ARG GLY LEU HIS SEQRES 6 B 184 TYR GLN ILE ARG GLN ALA GLN GLY LYS LEU VAL ARG ALA SEQRES 7 B 184 THR LEU GLY GLU VAL PHE ASP VAL ALA VAL ASP LEU ARG SEQRES 8 B 184 ARG GLY SER PRO THR PHE GLY GLN TRP VAL GLY GLU ARG SEQRES 9 B 184 LEU SER ALA GLU ASN LYS ARG GLN MET TRP ILE PRO ALA SEQRES 10 B 184 GLY PHE ALA HIS GLY PHE VAL VAL LEU SER GLU TYR ALA SEQRES 11 B 184 GLU PHE LEU TYR LYS THR THR ASP PHE TRP ALA PRO GLU SEQRES 12 B 184 HIS GLU ARG CYS ILE VAL TRP ASN ASP PRO GLU LEU LYS SEQRES 13 B 184 ILE ASP TRP PRO LEU GLN ASP ALA PRO LEU LEU SER GLU SEQRES 14 B 184 LYS ASP ARG GLN GLY LYS ALA PHE ALA ASP ALA ASP CYS SEQRES 15 B 184 PHE PRO HET TRH A1185 35 HET TRH B1185 35 HETNAM TRH 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE FORMUL 3 TRH 2(C16 H26 N2 O15 P2) FORMUL 5 HOH *590(H2 O) HELIX 1 1 ASN A 34 GLY A 43 1 10 HELIX 2 2 ALA A 141 GLU A 143 5 3 HELIX 3 3 SER A 168 GLN A 173 1 6 HELIX 4 4 ALA A 176 ALA A 180 5 5 HELIX 5 5 ASN B 34 GLY B 43 1 10 HELIX 6 6 ALA B 141 GLU B 143 5 3 HELIX 7 7 SER B 168 GLN B 173 1 6 HELIX 8 8 ALA B 176 ALA B 180 5 5 SHEET 1 AA 6 MET A 4 ARG A 8 0 SHEET 2 AA 6 ILE A 15 PRO A 19 -1 O LEU A 16 N THR A 7 SHEET 3 AA 6 GLN A 112 ILE A 115 -1 O GLN A 112 N PHE A 17 SHEET 4 AA 6 LYS A 74 LEU A 80 -1 O LYS A 74 N ILE A 115 SHEET 5 AA 6 TYR A 129 THR A 136 -1 O GLU A 131 N THR A 79 SHEET 6 AA 6 GLN A 50 ALA A 57 -1 O GLN A 50 N THR A 136 SHEET 1 AB 2 PHE A 22 ASP A 24 0 SHEET 2 AB 2 GLY A 27 PHE A 29 -1 O GLY A 27 N ASP A 24 SHEET 1 AC 5 TRP A 100 SER A 106 0 SHEET 2 AC 5 GLU A 82 ASP A 89 -1 O VAL A 83 N LEU A 105 SHEET 3 AC 5 PHE A 119 VAL A 125 -1 O ALA A 120 N VAL A 88 SHEET 4 AC 5 LEU A 61 GLN A 67 -1 O ARG A 62 N PHE A 123 SHEET 5 AC 5 GLU A 145 CYS A 147 -1 O ARG A 146 N TYR A 66 SHEET 1 BA 6 LYS B 5 ARG B 8 0 SHEET 2 BA 6 ILE B 15 GLU B 18 -1 O LEU B 16 N THR B 7 SHEET 3 BA 6 GLN B 112 ILE B 115 -1 O GLN B 112 N PHE B 17 SHEET 4 BA 6 LYS B 74 LEU B 80 -1 O LYS B 74 N ILE B 115 SHEET 5 BA 6 TYR B 129 THR B 136 -1 O GLU B 131 N THR B 79 SHEET 6 BA 6 GLN B 50 ALA B 57 -1 O GLN B 50 N THR B 136 SHEET 1 BB 2 PHE B 22 ASP B 24 0 SHEET 2 BB 2 GLY B 27 PHE B 29 -1 O GLY B 27 N ASP B 24 SHEET 1 BC 5 TRP B 100 SER B 106 0 SHEET 2 BC 5 GLU B 82 ASP B 89 -1 O VAL B 83 N LEU B 105 SHEET 3 BC 5 PHE B 119 VAL B 125 -1 O ALA B 120 N VAL B 88 SHEET 4 BC 5 LEU B 61 GLN B 67 -1 O ARG B 62 N PHE B 123 SHEET 5 BC 5 GLU B 145 CYS B 147 -1 O ARG B 146 N TYR B 66 CISPEP 1 GLY A 63 LEU A 64 0 -2.96 CISPEP 2 GLY B 63 LEU B 64 0 -3.67 SITE 1 AC1 22 PHE A 22 ARG A 26 PHE A 29 GLU A 31 SITE 2 AC1 22 GLN A 50 ARG A 62 HIS A 65 LYS A 74 SITE 3 AC1 22 HIS A 121 TYR A 134 TRP A 140 LYS A 170 SITE 4 AC1 22 HOH A2229 HOH A2253 HOH A2281 HOH A2282 SITE 5 AC1 22 HOH A2283 HOH A2284 HOH A2285 HOH A2286 SITE 6 AC1 22 HOH A2287 HOH A2288 SITE 1 AC2 22 PHE B 22 ARG B 26 PHE B 29 GLU B 31 SITE 2 AC2 22 GLN B 50 ARG B 62 HIS B 65 LYS B 74 SITE 3 AC2 22 HIS B 121 TYR B 134 TRP B 140 LYS B 170 SITE 4 AC2 22 HOH B2272 HOH B2293 HOH B2294 HOH B2295 SITE 5 AC2 22 HOH B2296 HOH B2297 HOH B2298 HOH B2299 SITE 6 AC2 22 HOH B2300 HOH B2301 CRYST1 64.915 125.537 109.366 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015405 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009144 0.00000