HEADER HYDROLASE 09-AUG-06 2J17 TITLE PTYR BOUND FORM OF SDP-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE YIL113W; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 17-198; COMPND 5 SYNONYM: SDP-1; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C / AB972; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: FB810; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS HYDROLASE, PROTEIN PHOSPHATASE, HYPOTHETICAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.C.BRIGGS,N.Q.MCDONALD REVDAT 7 06-NOV-24 2J17 1 REMARK REVDAT 6 13-DEC-23 2J17 1 LINK REVDAT 5 08-MAY-19 2J17 1 REMARK REVDAT 4 28-FEB-18 2J17 1 JRNL REVDAT 3 24-FEB-09 2J17 1 VERSN REVDAT 2 29-MAY-07 2J17 1 JRNL REVDAT 1 22-MAY-07 2J17 0 JRNL AUTH G.C.FOX,M.SHAFIQ,D.C.BRIGGS,P.P.KNOWLES,M.COLLISTER, JRNL AUTH 2 M.J.DIDMON,V.MAKRANTONI,R.J.DICKINSON,S.HANRAHAN,N.TOTTY, JRNL AUTH 3 M.J.STARK,S.M.KEYSE,N.Q.MCDONALD JRNL TITL REDOX-MEDIATED SUBSTRATE RECOGNITION BY SDP1 DEFINES A NEW JRNL TITL 2 GROUP OF TYROSINE PHOSPHATASES. JRNL REF NATURE V. 447 487 2007 JRNL REFN ESSN 1476-4687 JRNL PMID 17495930 JRNL DOI 10.1038/NATURE05804 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 507 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.271 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.377 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.290 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2382 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3245 ; 1.223 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 5.727 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;42.186 ;24.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;17.723 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.085 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1742 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1085 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1583 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 64 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.118 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1496 ; 0.459 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2363 ; 0.813 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1014 ; 1.035 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 882 ; 1.743 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 47 A 105 6 REMARK 3 1 B 47 B 105 6 REMARK 3 2 A 120 A 196 6 REMARK 3 2 B 120 B 196 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1021 ; .38 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1021 ; 1.65 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.DISORDER REGIONS AND ATOMS ARE OMITTED. REMARK 4 REMARK 4 2J17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1290029204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.970 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 61.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2J16 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 400, 0.1M HEPES, PH 7.5, 0.2M REMARK 280 CACL2, 7MG/ML PROTEIN, 15MM PHOSPHOTYROSINE, 1:1 SITTING DROP REMARK 280 VAPOUR DIFFUSION, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.78100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.83050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.83050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 163.17150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.83050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.83050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.39050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.83050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.83050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 163.17150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.83050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.83050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.39050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.78100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 140 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 140 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 GLN A 19 REMARK 465 ARG A 20 REMARK 465 PRO A 21 REMARK 465 SER A 22 REMARK 465 LEU A 23 REMARK 465 PRO A 24 REMARK 465 MET A 25 REMARK 465 LEU A 26 REMARK 465 ALA A 27 REMARK 465 THR A 28 REMARK 465 ASP A 29 REMARK 465 GLU A 30 REMARK 465 ARG A 31 REMARK 465 SER A 32 REMARK 465 THR A 33 REMARK 465 ASP A 34 REMARK 465 LYS A 35 REMARK 465 GLU A 36 REMARK 465 SER A 37 REMARK 465 PRO A 38 REMARK 465 ASN A 39 REMARK 465 GLU A 40 REMARK 465 ASP A 41 REMARK 465 ARG A 42 REMARK 465 GLU A 43 REMARK 465 PHE A 44 REMARK 465 VAL A 45 REMARK 465 PRO A 46 REMARK 465 SER A 48 REMARK 465 SER A 49 REMARK 465 LEU A 50 REMARK 465 ASP A 51 REMARK 465 VAL A 52 REMARK 465 ARG A 53 REMARK 465 THR A 198 REMARK 465 SER B 17 REMARK 465 GLY B 18 REMARK 465 GLN B 19 REMARK 465 ARG B 20 REMARK 465 PRO B 21 REMARK 465 SER B 22 REMARK 465 LEU B 23 REMARK 465 PRO B 24 REMARK 465 MET B 25 REMARK 465 LEU B 26 REMARK 465 ALA B 27 REMARK 465 THR B 28 REMARK 465 ASP B 29 REMARK 465 GLU B 30 REMARK 465 ARG B 31 REMARK 465 SER B 32 REMARK 465 THR B 33 REMARK 465 ASP B 34 REMARK 465 LYS B 35 REMARK 465 GLU B 36 REMARK 465 SER B 37 REMARK 465 PRO B 38 REMARK 465 ASN B 39 REMARK 465 GLU B 40 REMARK 465 ASP B 41 REMARK 465 ARG B 42 REMARK 465 GLU B 43 REMARK 465 PHE B 44 REMARK 465 VAL B 45 REMARK 465 PRO B 46 REMARK 465 SER B 48 REMARK 465 SER B 49 REMARK 465 LEU B 50 REMARK 465 ASP B 51 REMARK 465 VAL B 52 REMARK 465 THR B 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 54 CD NE CZ NH1 NH2 REMARK 470 LYS A 58 CD CE NZ REMARK 470 ARG A 108 CZ NH1 NH2 REMARK 470 ARG A 133 NE CZ NH1 NH2 REMARK 470 LYS A 171 NZ REMARK 470 ASP A 175 CG OD1 OD2 REMARK 470 LYS A 176 CD CE NZ REMARK 470 LYS A 197 CA C O CB CG CD CE REMARK 470 LYS A 197 NZ REMARK 470 ARG B 53 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 108 NE CZ NH1 NH2 REMARK 470 ARG B 133 CD NE CZ NH1 NH2 REMARK 470 LYS B 197 CA C O CB CG CD CE REMARK 470 LYS B 197 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 55 -61.36 86.59 REMARK 500 GLU A 66 28.99 -74.99 REMARK 500 SER A 72 -162.44 -71.68 REMARK 500 ASN A 93 131.76 -39.33 REMARK 500 SER A 140 -142.09 -123.66 REMARK 500 SER A 145 -70.51 -104.95 REMARK 500 ARG B 54 73.91 49.29 REMARK 500 GLU B 66 40.89 -76.21 REMARK 500 SER B 72 -162.71 -73.22 REMARK 500 SER B 140 -147.51 -118.60 REMARK 500 SER B 145 -70.34 -122.69 REMARK 500 ASN B 178 75.66 -156.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTR A 1199 REMARK 610 PTR B 1200 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1197 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE1 REMARK 620 2 GLU A 73 OE2 49.8 REMARK 620 3 ASN A 93 OD1 116.8 74.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1198 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 110 OE1 REMARK 620 2 HOH A2009 O 74.9 REMARK 620 3 HOH A2010 O 51.7 65.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1197 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 73 OE1 REMARK 620 2 GLU B 73 OE2 50.5 REMARK 620 3 ASN B 93 ND2 121.1 72.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1199 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 99 O REMARK 620 2 PRO B 100 O 153.3 REMARK 620 3 PRO B 100 O 72.4 121.1 REMARK 620 4 VAL B 102 O 88.9 74.7 74.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1198 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 134 OE2 REMARK 620 2 HOH B2005 O 72.0 REMARK 620 3 HOH B2005 O 84.0 121.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTR A1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTR B1200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J16 RELATED DB: PDB REMARK 900 APO & SULPHATE BOUND FORMS OF SDP-1 DBREF 2J17 A 17 198 UNP P40479 YIL3_YEAST 17 198 DBREF 2J17 B 17 198 UNP P40479 YIL3_YEAST 17 198 SEQADV 2J17 SER A 140 UNP P40479 CYS 140 ENGINEERED MUTATION SEQADV 2J17 SER B 140 UNP P40479 CYS 140 ENGINEERED MUTATION SEQRES 1 A 182 SER GLY GLN ARG PRO SER LEU PRO MET LEU ALA THR ASP SEQRES 2 A 182 GLU ARG SER THR ASP LYS GLU SER PRO ASN GLU ASP ARG SEQRES 3 A 182 GLU PHE VAL PRO CYS SER SER LEU ASP VAL ARG ARG ILE SEQRES 4 A 182 TYR PRO LYS GLY PRO LEU LEU VAL LEU PRO GLU LYS ILE SEQRES 5 A 182 TYR LEU TYR SER GLU PRO THR VAL LYS GLU LEU LEU PRO SEQRES 6 A 182 PHE ASP VAL VAL ILE ASN VAL ALA GLU GLU ALA ASN ASP SEQRES 7 A 182 LEU ARG MET GLN VAL PRO ALA VAL GLU TYR HIS HIS TYR SEQRES 8 A 182 ARG TRP GLU HIS ASP SER GLN ILE ALA LEU ASP LEU PRO SEQRES 9 A 182 SER LEU THR SER ILE ILE HIS ALA ALA THR THR LYS ARG SEQRES 10 A 182 GLU LYS ILE LEU ILE HIS SER GLN CYS GLY LEU SER ARG SEQRES 11 A 182 SER ALA THR LEU ILE ILE ALA TYR ILE MET LYS TYR HIS SEQRES 12 A 182 ASN LEU SER LEU ARG HIS SER TYR ASP LEU LEU LYS SER SEQRES 13 A 182 ARG ALA ASP LYS ILE ASN PRO SER ILE GLY LEU ILE PHE SEQRES 14 A 182 GLN LEU MET GLU TRP GLU VAL ALA LEU ASN ALA LYS THR SEQRES 1 B 182 SER GLY GLN ARG PRO SER LEU PRO MET LEU ALA THR ASP SEQRES 2 B 182 GLU ARG SER THR ASP LYS GLU SER PRO ASN GLU ASP ARG SEQRES 3 B 182 GLU PHE VAL PRO CYS SER SER LEU ASP VAL ARG ARG ILE SEQRES 4 B 182 TYR PRO LYS GLY PRO LEU LEU VAL LEU PRO GLU LYS ILE SEQRES 5 B 182 TYR LEU TYR SER GLU PRO THR VAL LYS GLU LEU LEU PRO SEQRES 6 B 182 PHE ASP VAL VAL ILE ASN VAL ALA GLU GLU ALA ASN ASP SEQRES 7 B 182 LEU ARG MET GLN VAL PRO ALA VAL GLU TYR HIS HIS TYR SEQRES 8 B 182 ARG TRP GLU HIS ASP SER GLN ILE ALA LEU ASP LEU PRO SEQRES 9 B 182 SER LEU THR SER ILE ILE HIS ALA ALA THR THR LYS ARG SEQRES 10 B 182 GLU LYS ILE LEU ILE HIS SER GLN CYS GLY LEU SER ARG SEQRES 11 B 182 SER ALA THR LEU ILE ILE ALA TYR ILE MET LYS TYR HIS SEQRES 12 B 182 ASN LEU SER LEU ARG HIS SER TYR ASP LEU LEU LYS SER SEQRES 13 B 182 ARG ALA ASP LYS ILE ASN PRO SER ILE GLY LEU ILE PHE SEQRES 14 B 182 GLN LEU MET GLU TRP GLU VAL ALA LEU ASN ALA LYS THR HET MG A1197 1 HET MG A1198 1 HET PTR A1199 11 HET MG B1197 1 HET MG B1198 1 HET MG B1199 1 HET PTR B1200 11 HETNAM MG MAGNESIUM ION HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 3 MG 5(MG 2+) FORMUL 5 PTR 2(C9 H12 N O6 P) FORMUL 10 HOH *24(H2 O) HELIX 1 1 VAL A 76 LEU A 80 5 5 HELIX 2 2 GLN A 114 LEU A 117 5 4 HELIX 3 3 ASP A 118 LYS A 132 1 15 HELIX 4 4 SER A 145 HIS A 159 1 15 HELIX 5 5 SER A 162 ALA A 174 1 13 HELIX 6 6 SER A 180 ALA A 196 1 17 HELIX 7 7 VAL B 76 LEU B 80 5 5 HELIX 8 8 GLN B 114 LEU B 117 5 4 HELIX 9 9 ASP B 118 LYS B 132 1 15 HELIX 10 10 SER B 145 HIS B 159 1 15 HELIX 11 11 SER B 162 SER B 172 1 11 HELIX 12 12 SER B 180 ALA B 196 1 17 SHEET 1 AA 5 LEU A 61 LEU A 64 0 SHEET 2 AA 5 ILE A 68 TYR A 71 -1 O ILE A 68 N VAL A 63 SHEET 3 AA 5 ILE A 136 HIS A 139 1 O ILE A 136 N TYR A 69 SHEET 4 AA 5 VAL A 84 ASN A 87 1 O VAL A 84 N LEU A 137 SHEET 5 AA 5 GLU A 103 HIS A 106 1 O GLU A 103 N VAL A 85 SHEET 1 BA 5 LEU B 61 LEU B 64 0 SHEET 2 BA 5 ILE B 68 TYR B 71 -1 O ILE B 68 N VAL B 63 SHEET 3 BA 5 ILE B 136 HIS B 139 1 O ILE B 136 N TYR B 69 SHEET 4 BA 5 VAL B 84 ASN B 87 1 O VAL B 84 N LEU B 137 SHEET 5 BA 5 GLU B 103 HIS B 106 1 O GLU B 103 N VAL B 85 SSBOND 1 CYS A 47 CYS A 142 1555 1555 2.04 SSBOND 2 CYS B 47 CYS B 142 1555 1555 2.03 LINK OE1 GLU A 73 MG MG A1197 1555 1555 2.66 LINK OE2 GLU A 73 MG MG A1197 1555 1555 2.56 LINK OD1 ASN A 93 MG MG A1197 1555 1555 1.98 LINK OE1 GLU A 110 MG MG A1198 1555 1555 2.90 LINK MG MG A1198 O HOH A2009 1555 1555 2.96 LINK MG MG A1198 O HOH A2010 1555 1555 3.14 LINK OE1 GLU B 73 MG MG B1197 1555 1555 2.71 LINK OE2 GLU B 73 MG MG B1197 1555 1555 2.42 LINK ND2 ASN B 93 MG MG B1197 1555 1555 2.20 LINK O VAL B 99 MG MG B1199 7555 1555 3.09 LINK O PRO B 100 MG MG B1199 1555 1555 2.77 LINK O PRO B 100 MG MG B1199 7555 1555 2.91 LINK O VAL B 102 MG MG B1199 7555 1555 2.35 LINK OE2 GLU B 134 MG MG B1198 1555 1555 2.63 LINK MG MG B1198 O HOH B2005 1555 1555 2.57 LINK MG MG B1198 O HOH B2005 1555 7555 2.38 SITE 1 AC1 2 GLU A 73 ASN A 93 SITE 1 AC2 3 GLU A 110 ASP A 112 HOH A2009 SITE 1 AC3 2 GLU B 73 ASN B 93 SITE 1 AC4 2 GLU B 134 HOH B2005 SITE 1 AC5 3 VAL B 99 PRO B 100 VAL B 102 SITE 1 AC6 8 HIS A 111 SER A 140 GLN A 141 CYS A 142 SITE 2 AC6 8 GLY A 143 LEU A 144 SER A 145 ARG A 146 SITE 1 AC7 8 HIS B 111 SER B 140 GLN B 141 CYS B 142 SITE 2 AC7 8 GLY B 143 LEU B 144 SER B 145 ARG B 146 CRYST1 61.661 61.661 217.562 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016218 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004596 0.00000 MTRIX1 1 0.960500 -0.221100 -0.168800 16.03100 1 MTRIX2 1 -0.210400 -0.974400 0.078700 78.49500 1 MTRIX3 1 -0.181900 -0.040000 -0.982500 75.75810 1