HEADER PROTEIN BINDING 10-AUG-06 2J1D TITLE CRYSTALLIZATION OF HDAAM1 C-TERMINAL FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISHEVELED-ASSOCIATED ACTIVATOR OF MORPHOGENESIS 1; COMPND 3 CHAIN: G; COMPND 4 FRAGMENT: FH2 DOMAIN, RESIDUES 596-1078; COMPND 5 SYNONYM: DAAM1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ACTIN ASSEMBLY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.LU,W.MENG,F.POY,M.J.ECK REVDAT 4 13-JUL-11 2J1D 1 VERSN REVDAT 3 24-FEB-09 2J1D 1 VERSN REVDAT 2 05-JUN-07 2J1D 1 JRNL REVDAT 1 15-MAY-07 2J1D 0 JRNL AUTH J.LU,W.MENG,F.POY,S.MAITI,B.L.GOODE,M.J.ECK JRNL TITL STRUCTURE OF THE FH2 DOMAIN OF DAAM1: IMPLICATIONS FOR JRNL TITL 2 FORMIN REGULATION OF ACTIN ASSEMBLY. JRNL REF J.MOL.BIOL. V. 369 1258 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17482208 JRNL DOI 10.1016/J.JMB.2007.04.002 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 296 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3202 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.26000 REMARK 3 B22 (A**2) : 11.90000 REMARK 3 B33 (A**2) : -5.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.283 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.221 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3259 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2324 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4369 ; 1.307 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5683 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 6.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;40.353 ;25.215 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;18.891 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 480 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3553 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 622 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 737 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2269 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1596 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1733 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 78 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 100 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.552 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2594 ; 0.892 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 790 ; 0.057 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3177 ; 0.824 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1485 ; 1.398 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1192 ; 2.017 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 601 G 653 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3371 32.7880 -41.1394 REMARK 3 T TENSOR REMARK 3 T11: -0.4228 T22: 0.0826 REMARK 3 T33: -0.2299 T12: 0.1524 REMARK 3 T13: -0.0561 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 4.7753 L22: 3.2871 REMARK 3 L33: 7.0474 L12: 2.6043 REMARK 3 L13: 1.6683 L23: 0.7263 REMARK 3 S TENSOR REMARK 3 S11: -0.3724 S12: 0.6053 S13: 0.6948 REMARK 3 S21: -0.2309 S22: -0.0464 S23: 0.1702 REMARK 3 S31: -0.5325 S32: -0.3541 S33: 0.4189 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 683 G 768 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8659 23.5711 -28.0768 REMARK 3 T TENSOR REMARK 3 T11: -0.1581 T22: -0.0078 REMARK 3 T33: -0.1243 T12: -0.0118 REMARK 3 T13: -0.0333 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 3.1290 L22: 1.7065 REMARK 3 L33: 4.5541 L12: -0.5539 REMARK 3 L13: -1.1872 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: 0.0010 S13: -0.0609 REMARK 3 S21: -0.0269 S22: 0.0008 S23: -0.2417 REMARK 3 S31: 0.1200 S32: -0.0672 S33: 0.1449 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 769 G 961 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8527 31.6097 13.7391 REMARK 3 T TENSOR REMARK 3 T11: -0.0915 T22: 0.0062 REMARK 3 T33: -0.1132 T12: -0.0019 REMARK 3 T13: -0.0352 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.1357 L22: 0.1488 REMARK 3 L33: 4.3836 L12: -0.2816 REMARK 3 L13: 1.8730 L23: -0.1882 REMARK 3 S TENSOR REMARK 3 S11: -0.1423 S12: -0.0195 S13: 0.0507 REMARK 3 S21: -0.0790 S22: -0.1542 S23: -0.0134 REMARK 3 S31: -0.3064 S32: -0.1029 S33: 0.2965 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 962 G 1024 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5452 8.8268 41.6079 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1216 REMARK 3 T33: 0.1572 T12: -0.0161 REMARK 3 T13: -0.0305 T23: 0.1434 REMARK 3 L TENSOR REMARK 3 L11: 1.0953 L22: 5.9466 REMARK 3 L33: 8.2794 L12: -1.1643 REMARK 3 L13: 0.4576 L23: -5.8181 REMARK 3 S TENSOR REMARK 3 S11: -0.2444 S12: -0.2491 S13: -0.4278 REMARK 3 S21: -0.2719 S22: 0.2892 S23: -0.0259 REMARK 3 S31: 0.9938 S32: -0.2597 S33: -0.0448 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2J1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-06. REMARK 100 THE PDBE ID CODE IS EBI-29650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.44850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.17150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.19850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.44850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.17150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.19850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.44850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.17150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.19850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.44850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.17150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.19850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 100.89700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU G 596 REMARK 465 ALA G 597 REMARK 465 LEU G 598 REMARK 465 LYS G 599 REMARK 465 LYS G 600 REMARK 465 ARG G 654 REMARK 465 GLN G 655 REMARK 465 GLN G 656 REMARK 465 ASP G 657 REMARK 465 PHE G 658 REMARK 465 PHE G 659 REMARK 465 VAL G 660 REMARK 465 ASN G 661 REMARK 465 SER G 662 REMARK 465 ASN G 663 REMARK 465 SER G 664 REMARK 465 LYS G 665 REMARK 465 GLN G 666 REMARK 465 LYS G 667 REMARK 465 GLU G 668 REMARK 465 ALA G 669 REMARK 465 ASP G 670 REMARK 465 ALA G 671 REMARK 465 ILE G 672 REMARK 465 ASP G 673 REMARK 465 ASP G 674 REMARK 465 THR G 675 REMARK 465 LEU G 676 REMARK 465 SER G 677 REMARK 465 SER G 678 REMARK 465 LYS G 679 REMARK 465 LEU G 680 REMARK 465 LYS G 681 REMARK 465 VAL G 682 REMARK 465 ASN G 1026 REMARK 465 SER G 1027 REMARK 465 GLU G 1028 REMARK 465 GLU G 1029 REMARK 465 SER G 1030 REMARK 465 GLY G 1031 REMARK 465 GLU G 1032 REMARK 465 PHE G 1033 REMARK 465 ASP G 1034 REMARK 465 ASP G 1035 REMARK 465 LEU G 1036 REMARK 465 VAL G 1037 REMARK 465 SER G 1038 REMARK 465 ALA G 1039 REMARK 465 LEU G 1040 REMARK 465 ARG G 1041 REMARK 465 SER G 1042 REMARK 465 GLY G 1043 REMARK 465 GLU G 1044 REMARK 465 VAL G 1045 REMARK 465 PHE G 1046 REMARK 465 ASP G 1047 REMARK 465 LYS G 1048 REMARK 465 ASP G 1049 REMARK 465 LEU G 1050 REMARK 465 SER G 1051 REMARK 465 LYS G 1052 REMARK 465 LEU G 1053 REMARK 465 LYS G 1054 REMARK 465 ARG G 1055 REMARK 465 ASN G 1056 REMARK 465 ARG G 1057 REMARK 465 LYS G 1058 REMARK 465 ARG G 1059 REMARK 465 ILE G 1060 REMARK 465 THR G 1061 REMARK 465 ASN G 1062 REMARK 465 GLN G 1063 REMARK 465 MET G 1064 REMARK 465 THR G 1065 REMARK 465 ASP G 1066 REMARK 465 SER G 1067 REMARK 465 SER G 1068 REMARK 465 ARG G 1069 REMARK 465 GLU G 1070 REMARK 465 ARG G 1071 REMARK 465 PRO G 1072 REMARK 465 ILE G 1073 REMARK 465 THR G 1074 REMARK 465 LYS G 1075 REMARK 465 LEU G 1076 REMARK 465 ASN G 1077 REMARK 465 PHE G 1078 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG G1005 CG CD NE CZ NH1 NH2 REMARK 470 GLN G1009 CG CD OE1 NE2 REMARK 470 ARG G1021 CG CD NE CZ NH1 NH2 REMARK 470 LYS G1022 CG CD CE NZ REMARK 470 LYS G1024 O REMARK 470 GLU G1025 CA C O CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY G 625 O HOH G 2005 2.11 REMARK 500 O ASP G 644 CG2 THR G 648 2.20 REMARK 500 OD2 ASP G 752 O HOH G 2025 1.55 REMARK 500 O HOH G 2025 O HOH G 2026 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH G 2054 O HOH G 2068 6555 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER G 602 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 SER G 602 N - CA - C ANGL. DEV. = 21.6 DEGREES REMARK 500 LEU G 874 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU G 623 -159.03 -92.37 REMARK 500 GLU G 624 -25.03 86.42 REMARK 500 PHE G 734 50.58 -98.13 REMARK 500 ARG G 829 -12.96 84.42 REMARK 500 ILE G 850 -63.59 -91.55 REMARK 500 SER G 915 30.51 -87.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 G3026 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL G3027 DBREF 2J1D G 596 1078 UNP Q9Y4D1 DAAM1_HUMAN 596 1078 SEQRES 1 G 483 LEU ALA LEU LYS LYS LYS SER ILE PRO GLN PRO THR ASN SEQRES 2 G 483 ALA LEU LYS SER PHE ASN TRP SER LYS LEU PRO GLU ASN SEQRES 3 G 483 LYS LEU GLU GLY THR VAL TRP THR GLU ILE ASP ASP THR SEQRES 4 G 483 LYS VAL PHE LYS ILE LEU ASP LEU GLU ASP LEU GLU ARG SEQRES 5 G 483 THR PHE SER ALA TYR GLN ARG GLN GLN ASP PHE PHE VAL SEQRES 6 G 483 ASN SER ASN SER LYS GLN LYS GLU ALA ASP ALA ILE ASP SEQRES 7 G 483 ASP THR LEU SER SER LYS LEU LYS VAL LYS GLU LEU SER SEQRES 8 G 483 VAL ILE ASP GLY ARG ARG ALA GLN ASN CYS ASN ILE LEU SEQRES 9 G 483 LEU SER ARG LEU LYS LEU SER ASN ASP GLU ILE LYS ARG SEQRES 10 G 483 ALA ILE LEU THR MET ASP GLU GLN GLU ASP LEU PRO LYS SEQRES 11 G 483 ASP MET LEU GLU GLN LEU LEU LYS PHE VAL PRO GLU LYS SEQRES 12 G 483 SER ASP ILE ASP LEU LEU GLU GLU HIS LYS HIS GLU LEU SEQRES 13 G 483 ASP ARG MET ALA LYS ALA ASP ARG PHE LEU PHE GLU MET SEQRES 14 G 483 SER ARG ILE ASN HIS TYR GLN GLN ARG LEU GLN SER LEU SEQRES 15 G 483 TYR PHE LYS LYS LYS PHE ALA GLU ARG VAL ALA GLU VAL SEQRES 16 G 483 LYS PRO LYS VAL GLU ALA ILE ARG SER GLY SER GLU GLU SEQRES 17 G 483 VAL PHE ARG SER GLY ALA LEU LYS GLN LEU LEU GLU VAL SEQRES 18 G 483 VAL LEU ALA PHE GLY ASN TYR MET ASN LYS GLY GLN ARG SEQRES 19 G 483 GLY ASN ALA TYR GLY PHE LYS ILE SER SER LEU ASN LYS SEQRES 20 G 483 ILE ALA ASP THR LYS SER SER ILE ASP LYS ASN ILE THR SEQRES 21 G 483 LEU LEU HIS TYR LEU ILE THR ILE VAL GLU ASN LYS TYR SEQRES 22 G 483 PRO SER VAL LEU ASN LEU ASN GLU GLU LEU ARG ASP ILE SEQRES 23 G 483 PRO GLN ALA ALA LYS VAL ASN MET THR GLU LEU ASP LYS SEQRES 24 G 483 GLU ILE SER THR LEU ARG SER GLY LEU LYS ALA VAL GLU SEQRES 25 G 483 THR GLU LEU GLU TYR GLN LYS SER GLN PRO PRO GLN PRO SEQRES 26 G 483 GLY ASP LYS PHE VAL SER VAL VAL SER GLN PHE ILE THR SEQRES 27 G 483 VAL ALA SER PHE SER PHE SER ASP VAL GLU ASP LEU LEU SEQRES 28 G 483 ALA GLU ALA LYS ASP LEU PHE THR LYS ALA VAL LYS HIS SEQRES 29 G 483 PHE GLY GLU GLU ALA GLY LYS ILE GLN PRO ASP GLU PHE SEQRES 30 G 483 PHE GLY ILE PHE ASP GLN PHE LEU GLN ALA VAL SER GLU SEQRES 31 G 483 ALA LYS GLN GLU ASN GLU ASN MET ARG LYS LYS LYS GLU SEQRES 32 G 483 GLU GLU GLU ARG ARG ALA ARG MET GLU ALA GLN LEU LYS SEQRES 33 G 483 GLU GLN ARG GLU ARG GLU ARG LYS MET ARG LYS ALA LYS SEQRES 34 G 483 GLU ASN SER GLU GLU SER GLY GLU PHE ASP ASP LEU VAL SEQRES 35 G 483 SER ALA LEU ARG SER GLY GLU VAL PHE ASP LYS ASP LEU SEQRES 36 G 483 SER LYS LEU LYS ARG ASN ARG LYS ARG ILE THR ASN GLN SEQRES 37 G 483 MET THR ASP SER SER ARG GLU ARG PRO ILE THR LYS LEU SEQRES 38 G 483 ASN PHE HET PO4 G3026 5 HET GOL G3027 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *75(H2 O) HELIX 1 1 PRO G 619 LEU G 623 5 5 HELIX 2 2 THR G 626 ILE G 631 5 6 HELIX 3 3 ASP G 632 THR G 634 5 3 HELIX 4 4 LYS G 635 LEU G 640 1 6 HELIX 5 5 ASP G 641 PHE G 649 1 9 HELIX 6 6 ASP G 689 LYS G 704 1 16 HELIX 7 7 SER G 706 THR G 716 1 11 HELIX 8 8 PRO G 724 PHE G 734 1 11 HELIX 9 9 GLU G 737 GLU G 746 1 10 HELIX 10 10 GLU G 750 ARG G 753 5 4 HELIX 11 11 ALA G 755 ARG G 766 1 12 HELIX 12 12 HIS G 769 ASN G 825 1 57 HELIX 13 13 LYS G 836 THR G 846 5 11 HELIX 14 14 THR G 855 TYR G 868 1 14 HELIX 15 15 PRO G 869 LEU G 872 5 4 HELIX 16 16 ASN G 873 LEU G 878 1 6 HELIX 17 17 ASP G 880 LYS G 886 1 7 HELIX 18 18 ASN G 888 SER G 915 1 28 HELIX 19 19 LYS G 923 PHE G 960 1 38 HELIX 20 20 GLN G 968 LYS G 995 1 28 HELIX 21 21 LYS G 995 GLU G 1000 1 6 HELIX 22 22 GLU G 1000 ALA G 1023 1 24 SITE 1 AC1 3 TYR G 778 LYS G 782 ARG G 786 SITE 1 AC2 4 ILE G 854 THR G 862 ASN G 990 MET G 993 CRYST1 100.897 100.343 148.397 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009911 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006739 0.00000