HEADER HYDROLASE 14-AUG-06 2J1L TITLE CRYSTAL STRUCTURE OF HUMAN RHO-RELATED GTP-BINDING PROTEIN RHOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO-RELATED GTP-BINDING PROTEIN RHOD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RHO-RELATED PROTEIN HP1, RHOHP1, RHOD; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4; SOURCE 9 OTHER_DETAILS: MGC KEYWDS GTPASE, MEMBRANE, GTP-BINDING, PRENYLATION, HYDROLASE, NUCLEOTIDE- KEYWDS 2 BINDING, METHYLATION, LIPOPROTEIN, ENDOSOME DYNAMICS EXPDTA X-RAY DIFFRACTION AUTHOR A.C.W.PIKE,C.JOHANSSON,C.GILEADI,F.H.NIESEN,F.SOBOTT,G.SCHOCH, AUTHOR 2 J.ELKINS,C.SMEE,F.GORREC,S.WATT,J.BRAY,A.P.TURNBULL,F.VON DELFT, AUTHOR 3 C.ARROWSMITH,A.EDWARDS,J.WEIGELT,M.SUNDSTROM,D.DOYLE REVDAT 5 13-DEC-23 2J1L 1 LINK REVDAT 4 24-JAN-18 2J1L 1 JRNL REVDAT 3 13-JUL-11 2J1L 1 VERSN REVDAT 2 24-FEB-09 2J1L 1 VERSN REVDAT 1 18-SEP-06 2J1L 0 JRNL AUTH A.C.W.PIKE,C.JOHANSSON,C.GILEADI,F.H.NIESEN,F.SOBOTT, JRNL AUTH 2 G.SCHOCH,J.ELKINS,C.SMEE,F.GORREC,S.WATT,J.BRAY, JRNL AUTH 3 A.P.TURNBULL,F.VON DELFT,C.ARROWSMITH,A.EDWARDS,J.WEIGELT, JRNL AUTH 4 M.SUNDSTROM,D.DOYLE JRNL TITL CRYSTAL STRUCTURE OF HUMAN RHO-RELATED GTP-BINDING PROTEIN JRNL TITL 2 RHOD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 676 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 82.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.50000 REMARK 3 B22 (A**2) : 3.50000 REMARK 3 B33 (A**2) : -5.25000 REMARK 3 B12 (A**2) : 1.75000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.285 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.082 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1214 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 757 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1659 ; 1.401 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1847 ; 0.894 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 154 ; 6.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;36.856 ;23.617 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 171 ;16.431 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.310 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 195 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1350 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 246 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 231 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 728 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 580 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 647 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 34 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.093 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 12 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 792 ; 0.499 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1244 ; 0.923 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 487 ; 1.353 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 415 ; 2.128 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): -38.2871 24.4599 -5.4356 REMARK 3 T TENSOR REMARK 3 T11: -0.0130 T22: -0.0764 REMARK 3 T33: -0.0881 T12: 0.0167 REMARK 3 T13: 0.1196 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 11.4699 L22: 6.6300 REMARK 3 L33: 9.1797 L12: 0.6257 REMARK 3 L13: 2.0025 L23: -1.3850 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: 0.4811 S13: 0.6235 REMARK 3 S21: -0.0719 S22: -0.0939 S23: 0.3939 REMARK 3 S31: -0.7586 S32: -0.7704 S33: 0.0244 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): -33.1927 18.7363 -1.2702 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: -0.1121 REMARK 3 T33: -0.1551 T12: -0.0267 REMARK 3 T13: 0.0570 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 6.5086 L22: 4.5666 REMARK 3 L33: 10.5221 L12: -0.7604 REMARK 3 L13: 2.0541 L23: -1.5226 REMARK 3 S TENSOR REMARK 3 S11: 0.2588 S12: 0.0513 S13: -0.2514 REMARK 3 S21: 0.3723 S22: -0.2599 S23: -0.0177 REMARK 3 S31: 0.0828 S32: 0.0149 S33: 0.0011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ELECTRON DENSITY SUGGESTS HIGH LIKELIHOOD OF A DOMAIN REMARK 3 SWAP. IN THE CRYSTAL, THE AMINO TERMINAL RESIDUES 15- 39 APPEAR REMARK 3 TO BE EXCHANGED WITH AN ADJACENT MOLECULE. HOWEVER THE REMARK 3 INTERVENING 'SWITCH 1' REGION BETWEEN RESIDUES 39 AND 47 IS REMARK 3 DISORDERED. CONSEQUENTLY THE COMPACT FORM OF THE MOLECULE IS REMARK 3 PRESENTED IN THIS ENTRY AS THE DOMAIN SWAP CANNOT BE CONFIRMED REMARK 3 UNAMBIGUOUSLY. MASS SPECTROMETRIC ANALYSIS OF THE CRYSTALS REMARK 3 CONFIRM THAT THE MOLECULE IS INTACT. REMARK 4 REMARK 4 2J1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1290029675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1MH1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG6K, 0.4M NH4CL, 15% ETG, 0.05M REMARK 280 MES PH6.0, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.499993 -0.866038 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866012 -0.500007 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.64033 REMARK 290 SMTRY1 3 -0.500007 0.866038 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866012 -0.499993 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.28067 REMARK 290 SMTRY1 4 -0.499993 0.866047 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866012 0.499993 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.28067 REMARK 290 SMTRY1 6 -0.500007 -0.866030 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866012 0.500007 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.64033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 VAL A -6 REMARK 465 ASP A -5 REMARK 465 LEU A -4 REMARK 465 GLY A -3 REMARK 465 THR A -2 REMARK 465 GLU A -1 REMARK 465 ASN A 0 REMARK 465 LEU A 1 REMARK 465 TYR A 2 REMARK 465 PHE A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 MET A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 40 REMARK 465 ALA A 41 REMARK 465 PHE A 42 REMARK 465 PRO A 43 REMARK 465 GLU A 44 REMARK 465 SER A 45 REMARK 465 TYR A 46 REMARK 465 ALA A 73 REMARK 465 GLY A 74 REMARK 465 GLN A 75 REMARK 465 ASP A 76 REMARK 465 ASP A 77 REMARK 465 TYR A 78 REMARK 465 ASP A 79 REMARK 465 ARG A 80 REMARK 465 LEU A 81 REMARK 465 ARG A 82 REMARK 465 PRO A 83 REMARK 465 LEU A 84 REMARK 465 PHE A 85 REMARK 465 TYR A 86 REMARK 465 PRO A 87 REMARK 465 ARG A 194 REMARK 465 GLY A 195 REMARK 465 ARG A 196 REMARK 465 ASN A 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 15 CG1 CG2 REMARK 470 ARG A 16 NE CZ NH1 NH2 REMARK 470 LYS A 19 CE NZ REMARK 470 MET A 35 CE REMARK 470 ASP A 39 CG OD1 OD2 REMARK 470 THR A 47 OG1 CG2 REMARK 470 MET A 55 CG SD CE REMARK 470 LEU A 58 CD1 CD2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LYS A 63 CD CE NZ REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 GLU A 114 CD OE1 OE2 REMARK 470 VAL A 115 CG1 CG2 REMARK 470 PHE A 118 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 120 CB CG CD CE NZ REMARK 470 LYS A 121 CB CG CD CE NZ REMARK 470 ILE A 124 CD1 REMARK 470 LYS A 135 CD CE NZ REMARK 470 LYS A 137 CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 ARG A 144 CD NE CZ NH1 NH2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 149 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 60.42 26.76 REMARK 500 ARG A 110 -43.70 -132.14 REMARK 500 LYS A 120 -107.72 48.41 REMARK 500 LYS A 121 56.08 -91.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1195 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 31 OG1 REMARK 620 2 GDP A1194 O1B 73.4 REMARK 620 3 GDP A1194 O3B 131.8 60.5 REMARK 620 4 HOH A2002 O 66.4 80.6 91.6 REMARK 620 5 HOH A2003 O 62.6 134.2 151.3 71.0 REMARK 620 6 HOH A2004 O 74.8 104.0 127.7 137.8 77.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A1194 DBREF 2J1L A -16 6 PDB 2J1L 2J1L -16 6 DBREF 2J1L A 7 197 UNP O00212 RHOD_HUMAN 7 197 SEQRES 1 A 214 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 214 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA GLY GLU SEQRES 3 A 214 GLU ALA PRO PRO GLY VAL ARG SER VAL LYS VAL VAL LEU SEQRES 4 A 214 VAL GLY ASP GLY GLY CYS GLY LYS THR SER LEU LEU MET SEQRES 5 A 214 VAL PHE ALA ASP GLY ALA PHE PRO GLU SER TYR THR PRO SEQRES 6 A 214 THR VAL PHE GLU ARG TYR MET VAL ASN LEU GLN VAL LYS SEQRES 7 A 214 GLY LYS PRO VAL HIS LEU HIS ILE TRP ASP THR ALA GLY SEQRES 8 A 214 GLN ASP ASP TYR ASP ARG LEU ARG PRO LEU PHE TYR PRO SEQRES 9 A 214 ASP ALA SER VAL LEU LEU LEU CYS PHE ASP VAL THR SER SEQRES 10 A 214 PRO ASN SER PHE ASP ASN ILE PHE ASN ARG TRP TYR PRO SEQRES 11 A 214 GLU VAL ASN HIS PHE CYS LYS LYS VAL PRO ILE ILE VAL SEQRES 12 A 214 VAL GLY CYS LYS THR ASP LEU ARG LYS ASP LYS SER LEU SEQRES 13 A 214 VAL ASN LYS LEU ARG ARG ASN GLY LEU GLU PRO VAL THR SEQRES 14 A 214 TYR HIS ARG GLY GLN GLU MET ALA ARG SER VAL GLY ALA SEQRES 15 A 214 VAL ALA TYR LEU GLU CYS SER ALA ARG LEU HIS ASP ASN SEQRES 16 A 214 VAL HIS ALA VAL PHE GLN GLU ALA ALA GLU VAL ALA LEU SEQRES 17 A 214 SER SER ARG GLY ARG ASN HET GDP A1194 28 HET MG A1195 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *8(H2 O) HELIX 1 1 GLY A 29 ASP A 39 1 11 HELIX 2 2 SER A 100 ARG A 110 1 11 HELIX 3 3 ARG A 110 CYS A 119 1 10 HELIX 4 4 LYS A 130 LYS A 135 5 6 HELIX 5 5 ASP A 136 ASN A 146 1 11 HELIX 6 6 THR A 152 VAL A 163 1 12 HELIX 7 7 ASN A 178 SER A 193 1 16 SHEET 1 AA 6 GLU A 52 VAL A 60 0 SHEET 2 AA 6 LYS A 63 ASP A 71 -1 O LYS A 63 N VAL A 60 SHEET 3 AA 6 SER A 17 GLY A 24 1 O VAL A 18 N HIS A 68 SHEET 4 AA 6 ALA A 89 ASP A 97 1 O ALA A 89 N LYS A 19 SHEET 5 AA 6 ILE A 124 CYS A 129 1 O ILE A 125 N LEU A 94 SHEET 6 AA 6 ALA A 167 GLU A 170 1 O ALA A 167 N VAL A 126 LINK OG1 THR A 31 MG MG A1195 1555 1555 2.36 LINK O1B GDP A1194 MG MG A1195 1555 1555 2.16 LINK O3B GDP A1194 MG MG A1195 1555 1555 2.63 LINK MG MG A1195 O HOH A2002 1555 1555 2.16 LINK MG MG A1195 O HOH A2003 1555 1555 2.15 LINK MG MG A1195 O HOH A2004 1555 1555 2.19 SITE 1 AC1 5 THR A 31 GDP A1194 HOH A2002 HOH A2003 SITE 2 AC1 5 HOH A2004 SITE 1 AC2 16 ASP A 25 GLY A 27 CYS A 28 GLY A 29 SITE 2 AC2 16 LYS A 30 THR A 31 SER A 32 LYS A 130 SITE 3 AC2 16 ASP A 132 LEU A 133 SER A 172 ALA A 173 SITE 4 AC2 16 ARG A 174 MG A1195 HOH A2001 HOH A2002 CRYST1 66.811 66.810 103.921 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014968 0.008642 0.000000 0.00000 SCALE2 0.000000 0.017283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009623 0.00000