HEADER OXIDOREDUCTASE 21-AUG-06 2J3I TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA DOUBLE BOND TITLE 2 REDUCTASE (AT5G16970)-BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADP-DEPENDENT OXIDOREDUCTASE P1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DOUBLE BOND REDUCTASE-AT5G16970; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DOUBLE BOND REDUCTASE (AT5G16970), BINARY COMPLEX NADP, APO KEYWDS 2 FORM, OXIDOREDUCTASE, ARABIDOPSIS THALIANA EXPDTA X-RAY DIFFRACTION AUTHOR B.YOUN,S.J.KIM,S.G.MOINUDDIN,C.LEE,D.L.BEDGAR,A.R.HARPER, AUTHOR 2 L.B.DAVIN,N.G.LEWIS,C.KANG REVDAT 4 24-FEB-09 2J3I 1 VERSN REVDAT 3 02-JAN-07 2J3I 1 JRNL REVDAT 2 11-OCT-06 2J3I 1 AUTHOR JRNL REVDAT 1 05-OCT-06 2J3I 0 JRNL AUTH B.YOUN,S.J.KIM,S.G.MOINUDDIN,C.LEE,D.L.BEDGAR, JRNL AUTH 2 A.R.HARPER,L.B.DAVIN,N.G.LEWIS,C.KANG JRNL TITL MECHANISTIC AND STRUCTURAL STUDIES OF APOFORM, JRNL TITL 2 BINARY, AND TERNARY COMPLEXES OF THE ARABIDOPSIS JRNL TITL 3 ALKENAL DOUBLE BOND REDUCTASE AT5G16970. JRNL REF J.BIOL.CHEM. V. 281 40076 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 17028190 JRNL DOI 10.1074/JBC.M605900200 REMARK 2 REMARK 2 RESOLUTION. 2.8 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.8 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 21151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5303 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.5 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2J3I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-06. REMARK 100 THE PDBE ID CODE IS EBI-29787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22577 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.330 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 61 REMARK 465 ASP A 62 REMARK 465 PRO A 63 REMARK 465 SER A 64 REMARK 465 THR A 65 REMARK 465 ALA A 66 REMARK 465 ALA A 67 REMARK 465 LEU A 68 REMARK 465 ALA A 69 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA B1069 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 44 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 CYS A 50 CA - C - N ANGL. DEV. = -18.5 DEGREES REMARK 500 CYS A 50 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TRP A 101 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 TRP A 101 CB - CG - CD1 ANGL. DEV. = -9.5 DEGREES REMARK 500 TRP A 101 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 101 CE2 - CD2 - CG ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP A 101 CG - CD2 - CE3 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 106 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 106 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 131 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 CYS A 151 CB - CA - C ANGL. DEV. = -7.4 DEGREES REMARK 500 ALA A 163 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 LYS A 219 CB - CG - CD ANGL. DEV. = 17.3 DEGREES REMARK 500 CYS A 221 CA - CB - SG ANGL. DEV. = -6.7 DEGREES REMARK 500 MET A 245 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 250 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR A 260 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 280 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 305 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 CYS B1050 CB - CA - C ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG B1055 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B1055 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B1057 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 HIS B1091 CB - CG - ND1 ANGL. DEV. = 8.4 DEGREES REMARK 500 TRP B1101 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP B1101 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ILE B1103 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 TRP B1106 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP B1106 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 CYS B1151 CB - CA - C ANGL. DEV. = -7.5 DEGREES REMARK 500 TYR B1160 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 VAL B1183 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 MET B1247 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 VAL B1253 CA - C - N ANGL. DEV. = -15.0 DEGREES REMARK 500 TYR B1290 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL B1341 CA - CB - CG1 ANGL. DEV. = -9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 56.43 -142.53 REMARK 500 TYR A 13 114.16 -35.41 REMARK 500 PRO A 35 -146.90 -117.44 REMARK 500 THR A 38 -91.09 -118.86 REMARK 500 ASN A 39 41.00 -88.50 REMARK 500 ILE A 87 -84.85 -87.61 REMARK 500 ASP A 98 -169.68 -128.01 REMARK 500 THR A 116 -19.42 -48.82 REMARK 500 ASP A 126 33.90 -84.68 REMARK 500 TYR A 132 22.57 -76.89 REMARK 500 GLU A 149 -61.55 -93.21 REMARK 500 SER A 152 73.06 31.38 REMARK 500 THR A 158 115.68 -36.64 REMARK 500 ALA A 167 -71.02 -35.99 REMARK 500 CYS A 181 -171.19 -69.94 REMARK 500 LEU A 196 -74.86 -55.31 REMARK 500 ASP A 213 44.11 -80.24 REMARK 500 SER A 258 13.04 -67.10 REMARK 500 HIS A 269 -82.23 -95.76 REMARK 500 ASN A 270 13.70 -25.41 REMARK 500 ARG A 305 39.25 -74.90 REMARK 500 LYS A 308 -53.85 -134.70 REMARK 500 ALA A 343 113.94 -165.18 REMARK 500 PHE B1025 -70.73 -105.04 REMARK 500 THR B1026 157.02 55.28 REMARK 500 VAL B1034 107.39 -52.02 REMARK 500 THR B1038 -141.92 -93.60 REMARK 500 ASN B1045 92.32 -64.74 REMARK 500 PRO B1052 -1.42 -59.89 REMARK 500 PRO B1061 84.98 -60.21 REMARK 500 ALA B1067 64.82 -108.38 REMARK 500 GLN B1070 99.60 66.55 REMARK 500 ALA B1071 152.21 -35.36 REMARK 500 THR B1073 105.40 -59.47 REMARK 500 PRO B1077 166.39 -48.07 REMARK 500 PRO B1092 -65.37 -27.58 REMARK 500 ASP B1098 166.93 -47.91 REMARK 500 PRO B1114 96.76 -69.22 REMARK 500 ALA B1118 -64.99 -129.85 REMARK 500 ASP B1126 -3.46 -177.23 REMARK 500 VAL B1150 -74.92 -141.55 REMARK 500 CYS B1151 -5.68 -54.65 REMARK 500 SER B1152 72.28 27.75 REMARK 500 ALA B1167 -30.64 -31.15 REMARK 500 ALA B1176 -78.33 -60.79 REMARK 500 LYS B1177 -37.79 -34.98 REMARK 500 MET B1178 8.07 -62.15 REMARK 500 TYR B1182 68.88 -108.79 REMARK 500 THR B1198 -81.44 -104.80 REMARK 500 PHE B1202 135.15 -39.97 REMARK 500 MET B1245 161.51 -47.85 REMARK 500 SER B1258 -52.81 -178.51 REMARK 500 HIS B1269 -74.91 -65.17 REMARK 500 ASN B1270 3.58 -37.54 REMARK 500 ARG B1278 60.15 -10.34 REMARK 500 VAL B1286 -33.83 -36.37 REMARK 500 TYR B1290 28.51 -76.20 REMARK 500 LYS B1292 33.31 -81.09 REMARK 500 GLU B1298 -37.57 -38.82 REMARK 500 ARG B1305 1.59 -51.86 REMARK 500 PRO B1323 -73.78 -43.17 REMARK 500 ASN B1334 114.98 -171.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 1322 PRO B 1323 149.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TRP A 101 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 351 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J3H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA REMARK 900 DOUBLE BOND REDUCTASE (AT5G16970)-APO FORM REMARK 900 RELATED ID: 2J3J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA REMARK 900 DOUBLE BOND REDUCTASE (AT5G16970)-TERNARY REMARK 900 COMPLEX I REMARK 900 RELATED ID: 2J3K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA REMARK 900 DOUBLE BOND REDUCTASE (AT5G16970)-TERNARY REMARK 900 COMPLEX II DBREF 2J3I A 1 345 UNP Q39172 P1_ARATH 1 345 DBREF 2J3I B 1001 1345 UNP Q39172 P1_ARATH 1 345 SEQADV 2J3I ASN A 279 UNP Q39172 ILE 279 CONFLICT SEQADV 2J3I ASN B 1279 UNP Q39172 ILE 279 CONFLICT SEQRES 1 A 345 MET THR ALA THR ASN LYS GLN VAL ILE LEU LYS ASP TYR SEQRES 2 A 345 VAL SER GLY PHE PRO THR GLU SER ASP PHE ASP PHE THR SEQRES 3 A 345 THR THR THR VAL GLU LEU ARG VAL PRO GLU GLY THR ASN SEQRES 4 A 345 SER VAL LEU VAL LYS ASN LEU TYR LEU SER CYS ASP PRO SEQRES 5 A 345 TYR MET ARG ILE ARG MET GLY LYS PRO ASP PRO SER THR SEQRES 6 A 345 ALA ALA LEU ALA GLN ALA TYR THR PRO GLY GLN PRO ILE SEQRES 7 A 345 GLN GLY TYR GLY VAL SER ARG ILE ILE GLU SER GLY HIS SEQRES 8 A 345 PRO ASP TYR LYS LYS GLY ASP LEU LEU TRP GLY ILE VAL SEQRES 9 A 345 ALA TRP GLU GLU TYR SER VAL ILE THR PRO MET THR HIS SEQRES 10 A 345 ALA HIS PHE LYS ILE GLN HIS THR ASP VAL PRO LEU SER SEQRES 11 A 345 TYR TYR THR GLY LEU LEU GLY MET PRO GLY MET THR ALA SEQRES 12 A 345 TYR ALA GLY PHE TYR GLU VAL CYS SER PRO LYS GLU GLY SEQRES 13 A 345 GLU THR VAL TYR VAL SER ALA ALA SER GLY ALA VAL GLY SEQRES 14 A 345 GLN LEU VAL GLY GLN LEU ALA LYS MET MET GLY CYS TYR SEQRES 15 A 345 VAL VAL GLY SER ALA GLY SER LYS GLU LYS VAL ASP LEU SEQRES 16 A 345 LEU LYS THR LYS PHE GLY PHE ASP ASP ALA PHE ASN TYR SEQRES 17 A 345 LYS GLU GLU SER ASP LEU THR ALA ALA LEU LYS ARG CYS SEQRES 18 A 345 PHE PRO ASN GLY ILE ASP ILE TYR PHE GLU ASN VAL GLY SEQRES 19 A 345 GLY LYS MET LEU ASP ALA VAL LEU VAL ASN MET ASN MET SEQRES 20 A 345 HIS GLY ARG ILE ALA VAL CYS GLY MET ILE SER GLN TYR SEQRES 21 A 345 ASN LEU GLU ASN GLN GLU GLY VAL HIS ASN LEU SER ASN SEQRES 22 A 345 ILE ILE TYR LYS ARG ASN ARG ILE GLN GLY PHE VAL VAL SEQRES 23 A 345 SER ASP PHE TYR ASP LYS TYR SER LYS PHE LEU GLU PHE SEQRES 24 A 345 VAL LEU PRO HIS ILE ARG GLU GLY LYS ILE THR TYR VAL SEQRES 25 A 345 GLU ASP VAL ALA ASP GLY LEU GLU LYS ALA PRO GLU ALA SEQRES 26 A 345 LEU VAL GLY LEU PHE HIS GLY LYS ASN VAL GLY LYS GLN SEQRES 27 A 345 VAL VAL VAL VAL ALA ARG GLU SEQRES 1 B 345 MET THR ALA THR ASN LYS GLN VAL ILE LEU LYS ASP TYR SEQRES 2 B 345 VAL SER GLY PHE PRO THR GLU SER ASP PHE ASP PHE THR SEQRES 3 B 345 THR THR THR VAL GLU LEU ARG VAL PRO GLU GLY THR ASN SEQRES 4 B 345 SER VAL LEU VAL LYS ASN LEU TYR LEU SER CYS ASP PRO SEQRES 5 B 345 TYR MET ARG ILE ARG MET GLY LYS PRO ASP PRO SER THR SEQRES 6 B 345 ALA ALA LEU ALA GLN ALA TYR THR PRO GLY GLN PRO ILE SEQRES 7 B 345 GLN GLY TYR GLY VAL SER ARG ILE ILE GLU SER GLY HIS SEQRES 8 B 345 PRO ASP TYR LYS LYS GLY ASP LEU LEU TRP GLY ILE VAL SEQRES 9 B 345 ALA TRP GLU GLU TYR SER VAL ILE THR PRO MET THR HIS SEQRES 10 B 345 ALA HIS PHE LYS ILE GLN HIS THR ASP VAL PRO LEU SER SEQRES 11 B 345 TYR TYR THR GLY LEU LEU GLY MET PRO GLY MET THR ALA SEQRES 12 B 345 TYR ALA GLY PHE TYR GLU VAL CYS SER PRO LYS GLU GLY SEQRES 13 B 345 GLU THR VAL TYR VAL SER ALA ALA SER GLY ALA VAL GLY SEQRES 14 B 345 GLN LEU VAL GLY GLN LEU ALA LYS MET MET GLY CYS TYR SEQRES 15 B 345 VAL VAL GLY SER ALA GLY SER LYS GLU LYS VAL ASP LEU SEQRES 16 B 345 LEU LYS THR LYS PHE GLY PHE ASP ASP ALA PHE ASN TYR SEQRES 17 B 345 LYS GLU GLU SER ASP LEU THR ALA ALA LEU LYS ARG CYS SEQRES 18 B 345 PHE PRO ASN GLY ILE ASP ILE TYR PHE GLU ASN VAL GLY SEQRES 19 B 345 GLY LYS MET LEU ASP ALA VAL LEU VAL ASN MET ASN MET SEQRES 20 B 345 HIS GLY ARG ILE ALA VAL CYS GLY MET ILE SER GLN TYR SEQRES 21 B 345 ASN LEU GLU ASN GLN GLU GLY VAL HIS ASN LEU SER ASN SEQRES 22 B 345 ILE ILE TYR LYS ARG ASN ARG ILE GLN GLY PHE VAL VAL SEQRES 23 B 345 SER ASP PHE TYR ASP LYS TYR SER LYS PHE LEU GLU PHE SEQRES 24 B 345 VAL LEU PRO HIS ILE ARG GLU GLY LYS ILE THR TYR VAL SEQRES 25 B 345 GLU ASP VAL ALA ASP GLY LEU GLU LYS ALA PRO GLU ALA SEQRES 26 B 345 LEU VAL GLY LEU PHE HIS GLY LYS ASN VAL GLY LYS GLN SEQRES 27 B 345 VAL VAL VAL VAL ALA ARG GLU HET NAP A 350 48 HET NAP B 351 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NAP PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *92(H2 O1) HELIX 1 1 THR A 19 SER A 21 5 3 HELIX 2 2 TYR A 53 MET A 58 1 6 HELIX 3 3 SER A 130 GLY A 134 5 5 HELIX 4 4 GLY A 137 GLU A 149 1 13 HELIX 5 5 VAL A 168 GLY A 180 1 13 HELIX 6 6 GLU A 191 PHE A 200 1 10 HELIX 7 7 LYS A 209 GLU A 211 5 3 HELIX 8 8 ASP A 213 PHE A 222 1 10 HELIX 9 9 GLY A 235 MET A 245 1 11 HELIX 10 10 MET A 256 ASN A 261 1 6 HELIX 11 11 SER A 272 ARG A 278 1 7 HELIX 12 12 VAL A 285 ASP A 291 5 7 HELIX 13 13 LYS A 292 ARG A 305 1 14 HELIX 14 14 ALA A 322 GLY A 332 1 11 HELIX 15 15 THR B 1019 SER B 1021 5 3 HELIX 16 16 ASP B 1051 ILE B 1056 5 6 HELIX 17 17 PRO B 1128 GLY B 1134 5 7 HELIX 18 18 GLY B 1137 GLU B 1149 1 13 HELIX 19 19 VAL B 1168 MET B 1178 1 11 HELIX 20 20 GLU B 1191 THR B 1198 1 8 HELIX 21 21 ASP B 1213 PHE B 1222 1 10 HELIX 22 22 GLY B 1235 MET B 1245 1 11 HELIX 23 23 SER B 1258 LEU B 1262 5 5 HELIX 24 24 ASN B 1270 TYR B 1276 5 7 HELIX 25 25 VAL B 1285 TYR B 1290 5 6 HELIX 26 26 TYR B 1293 ARG B 1305 1 13 HELIX 27 27 GLY B 1318 GLU B 1320 5 3 HELIX 28 28 LYS B 1321 LEU B 1329 1 9 SHEET 1 AA 2 THR A 4 LEU A 10 0 SHEET 2 AA 2 PHE A 23 THR A 29 -1 O ASP A 24 N ILE A 9 SHEET 1 AB 5 TYR A 109 ILE A 112 0 SHEET 2 AB 5 VAL A 41 CYS A 50 -1 O VAL A 41 N ILE A 112 SHEET 3 AB 5 GLN A 79 SER A 89 -1 O TYR A 81 N SER A 49 SHEET 4 AB 5 LEU A 99 ALA A 105 -1 O LEU A 100 N SER A 84 SHEET 5 AB 5 PHE A 120 LYS A 121 -1 O PHE A 120 N TRP A 101 SHEET 1 AC 4 TYR A 109 ILE A 112 0 SHEET 2 AC 4 VAL A 41 CYS A 50 -1 O VAL A 41 N ILE A 112 SHEET 3 AC 4 LYS A 337 VAL A 341 -1 O GLN A 338 N CYS A 50 SHEET 4 AC 4 GLU A 313 ASP A 317 1 O ASP A 314 N VAL A 339 SHEET 1 AD 5 ASP A 204 ASN A 207 0 SHEET 2 AD 5 VAL A 183 ALA A 187 1 O GLY A 185 N PHE A 206 SHEET 3 AD 5 VAL A 159 VAL A 161 1 O VAL A 159 N VAL A 184 SHEET 4 AD 5 ILE A 228 GLU A 231 1 O ILE A 228 N TYR A 160 SHEET 5 AD 5 ILE A 251 VAL A 253 1 O ALA A 252 N GLU A 231 SHEET 1 AE 7 ARG A 280 GLN A 282 0 SHEET 2 AE 7 ARG B1280 GLY B1283 -1 O ILE B1281 N ILE A 281 SHEET 3 AE 7 ARG B1250 VAL B1253 1 O ILE B1251 N GLN B1282 SHEET 4 AE 7 ILE B1228 GLU B1231 1 O TYR B1229 N ALA B1252 SHEET 5 AE 7 THR B1158 VAL B1161 1 O THR B1158 N ILE B1228 SHEET 6 AE 7 TYR B1182 ALA B1187 1 O TYR B1182 N VAL B1159 SHEET 7 AE 7 ASP B1204 ASN B1207 1 O ASP B1204 N GLY B1185 SHEET 1 BA 2 THR B1002 LYS B1006 0 SHEET 2 BA 2 THR B1027 GLU B1031 -1 O THR B1028 N ASN B1005 SHEET 1 BB 2 ILE B1009 LEU B1010 0 SHEET 2 BB 2 PHE B1023 ASP B1024 -1 O ASP B1024 N ILE B1009 SHEET 1 BC 5 VAL B1111 ILE B1112 0 SHEET 2 BC 5 VAL B1041 ASN B1045 -1 O VAL B1041 N ILE B1112 SHEET 3 BC 5 GLN B1079 GLU B1088 -1 O ARG B1085 N LYS B1044 SHEET 4 BC 5 LEU B1099 ALA B1105 -1 O LEU B1100 N SER B1084 SHEET 5 BC 5 PHE B1120 LYS B1121 -1 O PHE B1120 N TRP B1101 SHEET 1 BD 3 TYR B1047 SER B1049 0 SHEET 2 BD 3 LYS B1337 VAL B1341 -1 O VAL B1340 N LEU B1048 SHEET 3 BD 3 GLU B1313 ASP B1314 1 O ASP B1314 N VAL B1339 LINK O2X NAP B 351 N GLY B1188 1555 1555 2.02 CISPEP 1 VAL A 34 PRO A 35 0 -12.69 SITE 1 AC1 25 PRO A 52 TYR A 53 MET A 138 THR A 142 SITE 2 AC1 25 ALA A 163 SER A 165 GLY A 166 ALA A 167 SITE 3 AC1 25 VAL A 168 GLY A 169 ALA A 187 GLY A 188 SITE 4 AC1 25 LYS A 192 TYR A 208 VAL A 233 CYS A 254 SITE 5 AC1 25 ILE A 257 SER A 258 TYR A 260 PHE A 284 SITE 6 AC1 25 VAL A 286 LEU A 329 ASN A 334 GLY A 336 SITE 7 AC1 25 LYS A 337 SITE 1 AC2 24 PRO B1052 TYR B1053 THR B1142 ALA B1163 SITE 2 AC2 24 SER B1165 GLY B1166 ALA B1167 VAL B1168 SITE 3 AC2 24 ALA B1187 GLY B1188 SER B1189 LYS B1192 SITE 4 AC2 24 TYR B1208 ASN B1232 VAL B1233 CYS B1254 SITE 5 AC2 24 ILE B1257 PHE B1284 VAL B1285 VAL B1286 SITE 6 AC2 24 LEU B1329 PHE B1330 GLY B1332 ASN B1334 CRYST1 49.150 122.660 147.940 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020346 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006759 0.00000