HEADER IMMUNOGLOBULIN 11-SEP-06 2J53 TITLE SOLUTION STRUCTURE OF GB1 DOMAIN PROTEIN G AND LOW AND HIGH PRESSURE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 228-282; COMPND 5 SYNONYM: PROTEIN G, IGG-BINDING PROTEIN G; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 1306; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PEPTIDOGLYCAN-ANCHOR, IMMUNOGLOBULIN, PRESSURE, CELL WALL, PROTEIN G, KEYWDS 2 IGG-BINDING PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR D.J.WILTON,R.B.TUNNICLIFFE,Y.O.KAMATARI,K.AKASAKA,M.P.WILLIAMSON REVDAT 4 15-MAY-24 2J53 1 REMARK REVDAT 3 24-FEB-09 2J53 1 VERSN REVDAT 2 25-DEC-07 2J53 1 JRNL REVDAT 1 25-SEP-07 2J53 0 JRNL AUTH D.J.WILTON,R.B.TUNNICLIFFE,Y.O.KAMATARI,K.AKASAKA, JRNL AUTH 2 M.P.WILLIAMSON JRNL TITL PRESSURE-INDUCED CHANGES IN THE SOLUTION STRUCTURE OF THE JRNL TITL 2 GB1 DOMAIN OF PROTEIN G. JRNL REF PROTEINS V. 71 1432 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18076052 JRNL DOI 10.1002/PROT.21832 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS STRUCTURE IS FOR COMPARISON WITH REMARK 3 THE ACCOMPANYING LOW PRESSURE STRUCTURE(2J52) REMARK 4 REMARK 4 2J53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1290029934. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 287.0 REMARK 210 PH : 5.4 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : 2000.0 ATM REMARK 210 SAMPLE CONTENTS : 90%WATER/10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 273 TO ALA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 9 HZ1 LYS A 13 1.29 REMARK 500 OH TYR A 3 HZ2 LYS A 50 1.31 REMARK 500 H2 MET A 1 O ALA A 20 1.33 REMARK 500 OE2 GLU A 27 HZ1 LYS A 31 1.35 REMARK 500 O ALA A 24 HZ1 LYS A 28 1.37 REMARK 500 OE1 GLU A 27 HZ3 LYS A 28 1.37 REMARK 500 HZ2 LYS A 4 OE1 GLU A 15 1.39 REMARK 500 HZ3 LYS A 10 OXT GLU A 56 1.40 REMARK 500 OD2 ASP A 46 H THR A 49 1.44 REMARK 500 O LYS A 10 HZ2 LYS A 13 1.45 REMARK 500 O GLN A 32 H ASP A 36 1.45 REMARK 500 OD1 ASP A 22 H THR A 25 1.45 REMARK 500 HG1 THR A 44 OG1 THR A 53 1.48 REMARK 500 O THR A 44 HG1 THR A 53 1.48 REMARK 500 O VAL A 54 HG1 THR A 55 1.52 REMARK 500 O GLU A 27 H LYS A 31 1.53 REMARK 500 OD2 ASP A 40 HE1 TRP A 43 1.53 REMARK 500 H LYS A 10 OE1 GLU A 56 1.53 REMARK 500 O LYS A 4 H PHE A 52 1.53 REMARK 500 OD2 ASP A 46 HG1 THR A 49 1.54 REMARK 500 O ALA A 34 H VAL A 39 1.55 REMARK 500 HE21 GLN A 32 OD1 ASP A 36 1.55 REMARK 500 H1 MET A 1 OE1 GLU A 19 1.55 REMARK 500 H GLU A 42 O THR A 55 1.55 REMARK 500 O LYS A 31 H ASN A 35 1.58 REMARK 500 OE1 GLU A 19 H ALA A 20 1.59 REMARK 500 HH TYR A 33 OD1 ASN A 37 1.59 REMARK 500 O ALA A 26 H PHE A 30 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 20 156.85 168.40 REMARK 500 ASP A 22 -165.46 -113.90 REMARK 500 ASP A 40 -142.59 -172.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EM7 RELATED DB: PDB REMARK 900 HELIX VARIANT OF THE B1 DOMAIN FROM STREPTOCOCCAL PROTEIN G REMARK 900 RELATED ID: 1GB1 RELATED DB: PDB REMARK 900 RELATED ID: 1IGC RELATED DB: PDB REMARK 900 IGG1 FAB FRAGMENT (MOPC21) COMPLEX WITH DOMAIN III OF 1IGC 3PROTEIN REMARK 900 G FROM STREPTOCOCCUS 1IGC 4 REMARK 900 RELATED ID: 1IGD RELATED DB: PDB REMARK 900 RELATED ID: 1LE3 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF TRYPTOPHAN ZIPPER 4: A STABLE BETA-HAIRPINPEPTIDE REMARK 900 BASED ON THE C- TERMINAL HAIRPIN OF THE B1 DOMAINOF PROTEIN G REMARK 900 RELATED ID: 1MPE RELATED DB: PDB REMARK 900 ENSEMBLE OF 20 STRUCTURES OF THE TETRAMERIC MUTANT OF THEB1 DOMAIN REMARK 900 OF STREPTOCOCCAL PROTEIN G REMARK 900 RELATED ID: 1MVK RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE TETRAMERIC MUTANT OF THE B1 DOMAINOF REMARK 900 STREPTOCOCCAL PROTEIN G REMARK 900 RELATED ID: 1PGA RELATED DB: PDB REMARK 900 RELATED ID: 1PGB RELATED DB: PDB REMARK 900 RELATED ID: 1PGX RELATED DB: PDB REMARK 900 RELATED ID: 1PN5 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE NALP1 PYRIN DOMAIN ( PYD) REMARK 900 RELATED ID: 1Q10 RELATED DB: PDB REMARK 900 ENSEMBLE OF 40 STRUCTURES OF THE DIMERIC MUTANT OF THE B1DOMAIN OF REMARK 900 STREPTOCOCCAL PROTEIN G REMARK 900 RELATED ID: 2GB1 RELATED DB: PDB REMARK 900 RELATED ID: 2IGD RELATED DB: PDB REMARK 900 ANISOTROPIC STRUCTURE OF PROTEIN G IGG- BINDING DOMAIN IIIAT 1.1 REMARK 900 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2IGH RELATED DB: PDB REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J52 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GB1 DOMAIN PROTEIN G AND LOW AND HIGH REMARK 900 PRESSURE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 SUBSTITUTE D273A DBREF 2J53 A 1 1 PDB 2J53 2J53 1 1 DBREF 2J53 A 2 56 UNP P06654 SPG1_STRSG 228 282 SEQADV 2J53 ALA A 47 UNP P06654 ASP 273 ENGINEERED MUTATION SEQRES 1 A 56 MET THR TYR LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 A 56 GLY GLU THR THR THR GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 A 56 GLU LYS VAL PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL SEQRES 4 A 56 ASP GLY GLU TRP THR TYR ASP ALA ALA THR LYS THR PHE SEQRES 5 A 56 THR VAL THR GLU HELIX 1 1 ASP A 22 ASN A 37 1 16 SHEET 1 AA 4 LYS A 13 THR A 18 0 SHEET 2 AA 4 TYR A 3 ASN A 8 -1 O TYR A 3 N THR A 18 SHEET 3 AA 4 THR A 51 THR A 55 1 O PHE A 52 N ILE A 6 SHEET 4 AA 4 GLU A 42 TYR A 45 -1 O GLU A 42 N THR A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000