HEADER OXIDOREDUCTASE 12-SEP-06 2J56 TITLE X-RAY REDUCED PARACCOCUS DENITRIFICANS METHYLAMINE DEHYDROGENASE N- TITLE 2 SEMIQUINONE IN COMPLEX WITH AMICYANIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMICYANIN; COMPND 3 CHAIN: A, B; COMPND 4 OTHER_DETAILS: AMICYANIN IS THE OBLIGATE ELECTRON TRANSFER PARTNER OF COMPND 5 METHYLAMINE DEHYDROGENASE.; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: METHYLAMINE DEHYDROGENASE HEAVY CHAIN; COMPND 8 CHAIN: H, J; COMPND 9 SYNONYM: METHYLAMINE DEHYDROGENASE ALPHA CHAIN, MADH; COMPND 10 EC: 1.4.99.3; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: METHYLAMINE DEHYDROGENASE LIGHT CHAIN; COMPND 13 CHAIN: L, M; COMPND 14 SYNONYM: METHYLAMINE DEHYDROGENASE BETA CHAIN, MADH; COMPND 15 EC: 1.4.99.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 266; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 6 ORGANISM_TAXID: 266; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 9 ORGANISM_TAXID: 266 KEYWDS OXIDOREDUCTASE, PERIPLASMIC, METAL-BINDING, ELECTRON TRANSPORT, KEYWDS 2 SINGLE CRYSTAL MICROSPECTROPHOTOMETRY EXPDTA X-RAY DIFFRACTION AUTHOR A.R.PEARSON,R.PAHL,V.L.DAVIDSON,C.M.WILMOT REVDAT 4 06-NOV-24 2J56 1 REMARK LINK REVDAT 3 20-APR-11 2J56 1 VERSN REVDAT 2 24-FEB-09 2J56 1 VERSN REVDAT 1 23-JAN-07 2J56 0 JRNL AUTH A.R.PEARSON,R.PAHL,E.G.KOVALEVA,V.L.DAVIDSON,C.M.WILMOT JRNL TITL TRACKING X-RAY-DERIVED REDOX CHANGES IN CRYSTALS OF A JRNL TITL 2 METHYLAMINE DEHYDROGENASE/AMICYANIN COMPLEX USING JRNL TITL 3 SINGLE-CRYSTAL UV/VIS MICROSPECTROPHOTOMETRY. JRNL REF J.SYNCHROTRON RADIAT. V. 14 92 2007 JRNL REFN ISSN 0909-0495 JRNL PMID 17211075 JRNL DOI 10.1107/S0909049506051259 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.DE LA MORA-REY,A.R.PEARSON,E.HOEFFNER,K.T.WATTS,N.YUCEL, REMARK 1 AUTH 2 V.L.DAVIDSON,C.M.WILMOT REMARK 1 TITL CRYSTALLOGRAPHIC STRUCTURES OF METHYLAMINE DEHYDROGENASE REMARK 1 TITL 2 CATALYTIC INTERMEDIATES FROM PARACCOCUS DENITRIFICANS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 101798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5353 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 415 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 1033 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.525 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9628 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13144 ; 1.637 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1207 ; 8.954 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 443 ;35.086 ;24.041 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1443 ;13.814 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;15.713 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1423 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7542 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4615 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6499 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1092 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6042 ; 0.849 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9746 ; 1.474 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3735 ; 2.411 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3397 ; 3.836 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1290029946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.00 REMARK 200 NUMBER OF CRYSTALS USED : 7 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101798 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 43.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 9.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.65150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.51450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.51450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.32575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.51450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.51450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 183.97725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.51450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.51450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.32575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.51450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.51450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 183.97725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 122.65150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, J, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 ASP H 2 REMARK 465 ALA H 3 REMARK 465 PRO H 4 REMARK 465 GLU H 5 REMARK 465 ALA H 6 REMARK 465 GLU H 7 REMARK 465 THR H 8 REMARK 465 GLN H 9 REMARK 465 ALA H 10 REMARK 465 GLN H 11 REMARK 465 GLN J 1 REMARK 465 ASP J 2 REMARK 465 ALA J 3 REMARK 465 PRO J 4 REMARK 465 GLU J 5 REMARK 465 ALA J 6 REMARK 465 GLU J 7 REMARK 465 THR J 8 REMARK 465 GLN J 9 REMARK 465 ALA J 10 REMARK 465 GLN J 11 REMARK 465 ALA L 1 REMARK 465 ASP L 2 REMARK 465 ALA L 3 REMARK 465 PRO L 4 REMARK 465 ALA L 5 REMARK 465 GLY L 6 REMARK 465 ALA M 1 REMARK 465 ASP M 2 REMARK 465 ALA M 3 REMARK 465 PRO M 4 REMARK 465 ALA M 5 REMARK 465 GLY M 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 1 N REMARK 470 ASP B 1 N REMARK 470 GLU J 209 CG CD OE1 OE2 REMARK 470 SER M 131 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 99 OD1 ASP J 180 2.02 REMARK 500 OE1 GLU H 270 O HOH H 2297 2.11 REMARK 500 OE2 GLU J 12 NH1 ARG J 20 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 99 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP H 147 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 GLY H 386 N - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 ARG J 104 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG J 197 CG - CD - NE ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG J 197 NE - CZ - NH1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG J 197 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 -8.30 -59.67 REMARK 500 ILE H 102 -75.17 59.98 REMARK 500 ALA H 130 62.28 37.68 REMARK 500 LYS H 173 -70.47 -97.19 REMARK 500 HIS H 183 160.18 72.70 REMARK 500 TRP H 282 -84.27 -115.28 REMARK 500 LYS H 343 76.90 -117.63 REMARK 500 ILE J 102 -79.01 70.69 REMARK 500 LYS J 173 -67.40 -101.04 REMARK 500 ASP J 180 70.29 -68.90 REMARK 500 HIS J 183 155.45 77.71 REMARK 500 ASP J 190 16.29 -141.79 REMARK 500 HIS J 230 63.39 -119.21 REMARK 500 TRP J 282 -89.37 -107.86 REMARK 500 THR L 91 38.29 -144.33 REMARK 500 THR M 91 34.75 -144.06 REMARK 500 ALA M 130 -5.25 45.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER H 157 PRO H 158 47.17 REMARK 500 SER J 157 PRO J 158 43.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER H 157 12.25 REMARK 500 SER J 157 11.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H2001 DISTANCE = 6.79 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 53 ND1 REMARK 620 2 CYS A 92 SG 130.0 REMARK 620 3 HIS A 95 ND1 108.8 111.3 REMARK 620 4 MET A 98 SD 86.5 114.5 99.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B1106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 53 ND1 REMARK 620 2 CYS B 92 SG 128.9 REMARK 620 3 HIS B 95 ND1 111.1 111.0 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA L 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA M 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 1387 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AAC RELATED DB: PDB REMARK 900 AMICYANIN OXIDIZED, 1.31 ANGSTROMS REMARK 900 RELATED ID: 1AAJ RELATED DB: PDB REMARK 900 AMICYANIN (APO FORM) REMARK 900 RELATED ID: 1AAN RELATED DB: PDB REMARK 900 AMICYANIN REMARK 900 RELATED ID: 1BXA RELATED DB: PDB REMARK 900 AMICYANIN REDUCED, PH 4.4, 1.3 ANGSTROMS REMARK 900 RELATED ID: 1MDA RELATED DB: PDB REMARK 900 METHYLAMINE DEHYDROGENASE COMPLEX WITH AMICYANIN REMARK 900 RELATED ID: 1MG2 RELATED DB: PDB REMARK 900 MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERSTHE REMARK 900 REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON REMARK 900 TRANSFER REACTION WITH AMICYANIN REMARK 900 RELATED ID: 1MG3 RELATED DB: PDB REMARK 900 MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERSTHE REMARK 900 REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITSELECTRON REMARK 900 TRANSFER REACTION WITH AMICYANIN REMARK 900 RELATED ID: 1SF3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE REDUCED FORM OF THE P94A MUTANT OF AMICYANIN REMARK 900 RELATED ID: 1SF5 RELATED DB: PDB REMARK 900 STRUCTURE OF OXIDIZED STATE OF THE P94A MUTANT OF AMICYANIN REMARK 900 RELATED ID: 1SFD RELATED DB: PDB REMARK 900 OXIDIZED FORM OF AMICYANIN MUTANT P94F REMARK 900 RELATED ID: 1SFH RELATED DB: PDB REMARK 900 REDUCED STATE OF AMICYANIN MUTANT P94F REMARK 900 RELATED ID: 1T5K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMICYANIN SUBSTITUTED WITH COBALT REMARK 900 RELATED ID: 2MTA RELATED DB: PDB REMARK 900 METHYLAMINE DEHYDROGENASE COMPLEX WITH AMICYANIN AND CYTOCHROME REMARK 900 C551I REMARK 900 RELATED ID: 2RAC RELATED DB: PDB REMARK 900 AMICYANIN REDUCED, PH 7.7, 1.3 ANGSTROMS REMARK 900 RELATED ID: 2BBK RELATED DB: PDB REMARK 900 METHYLAMINE DEHYDROGENASE (MADH) REMARK 900 RELATED ID: 2J55 RELATED DB: PDB REMARK 900 X-RAY REDUCED PARACCOCUS DENITRIFICANS METHYLAMINE DEHYDROGENASE O- REMARK 900 QUINONE IN COMPLEX WITH AMICYANIN. REMARK 900 RELATED ID: 2J57 RELATED DB: PDB REMARK 900 X-RAY REDUCED PARACCOCUS DENITRIFICANS METHYLAMINE DEHYDROGENASE N- REMARK 900 QUINOL IN COMPLEX WITH AMICYANIN. REMARK 999 REMARK 999 SEQUENCE REMARK 999 AT PRESENT, THE SEQUENCE DATABASES INDICATE THAT RESIDUE REMARK 999 312 OF THE HEAVY CHAIN IS LEU AND RESIDUE 313 IS LEU. THE REMARK 999 AUTHORS WHO DEPOSITED 2MTA FOUND THAT THEY MISREAD THE GELS REMARK 999 AND THAT RESIDUES 312 AND 313 SHOULD BE PHE AND VAL, REMARK 999 RESPECTIVELY. IN THIS ENTRY THE SEQUENCE ERRORS HAVE BEEN REMARK 999 CORRECTED. DBREF 2J56 A 1 105 UNP P22364 AMCY_PARDE 27 131 DBREF 2J56 B 1 105 UNP P22364 AMCY_PARDE 27 131 DBREF 2J56 H 1 386 UNP P29894 DHMH_PARDE 32 417 DBREF 2J56 J 1 386 UNP P29894 DHMH_PARDE 32 417 DBREF 2J56 L 1 131 UNP P22619 DHML_PARDE 58 188 DBREF 2J56 M 1 131 UNP P22619 DHML_PARDE 58 188 SEQADV 2J56 PHE H 312 UNP P29894 LEU 343 SEE REMARK 999 SEQADV 2J56 VAL H 313 UNP P29894 LEU 344 SEE REMARK 999 SEQADV 2J56 PHE J 312 UNP P29894 LEU 343 SEE REMARK 999 SEQADV 2J56 VAL J 313 UNP P29894 LEU 344 SEE REMARK 999 SEQRES 1 A 105 ASP LYS ALA THR ILE PRO SER GLU SER PRO PHE ALA ALA SEQRES 2 A 105 ALA GLU VAL ALA ASP GLY ALA ILE VAL VAL ASP ILE ALA SEQRES 3 A 105 LYS MET LYS TYR GLU THR PRO GLU LEU HIS VAL LYS VAL SEQRES 4 A 105 GLY ASP THR VAL THR TRP ILE ASN ARG GLU ALA MET PRO SEQRES 5 A 105 HIS ASN VAL HIS PHE VAL ALA GLY VAL LEU GLY GLU ALA SEQRES 6 A 105 ALA LEU LYS GLY PRO MET MET LYS LYS GLU GLN ALA TYR SEQRES 7 A 105 SER LEU THR PHE THR GLU ALA GLY THR TYR ASP TYR HIS SEQRES 8 A 105 CYS THR PRO HIS PRO PHE MET ARG GLY LYS VAL VAL VAL SEQRES 9 A 105 GLU SEQRES 1 B 105 ASP LYS ALA THR ILE PRO SER GLU SER PRO PHE ALA ALA SEQRES 2 B 105 ALA GLU VAL ALA ASP GLY ALA ILE VAL VAL ASP ILE ALA SEQRES 3 B 105 LYS MET LYS TYR GLU THR PRO GLU LEU HIS VAL LYS VAL SEQRES 4 B 105 GLY ASP THR VAL THR TRP ILE ASN ARG GLU ALA MET PRO SEQRES 5 B 105 HIS ASN VAL HIS PHE VAL ALA GLY VAL LEU GLY GLU ALA SEQRES 6 B 105 ALA LEU LYS GLY PRO MET MET LYS LYS GLU GLN ALA TYR SEQRES 7 B 105 SER LEU THR PHE THR GLU ALA GLY THR TYR ASP TYR HIS SEQRES 8 B 105 CYS THR PRO HIS PRO PHE MET ARG GLY LYS VAL VAL VAL SEQRES 9 B 105 GLU SEQRES 1 H 386 GLN ASP ALA PRO GLU ALA GLU THR GLN ALA GLN GLU THR SEQRES 2 H 386 GLN GLY GLN ALA ALA ALA ARG ALA ALA ALA ALA ASP LEU SEQRES 3 H 386 ALA ALA GLY GLN ASP ASP GLU PRO ARG ILE LEU GLU ALA SEQRES 4 H 386 PRO ALA PRO ASP ALA ARG ARG VAL TYR VAL ASN ASP PRO SEQRES 5 H 386 ALA HIS PHE ALA ALA VAL THR GLN GLN PHE VAL ILE ASP SEQRES 6 H 386 GLY GLU ALA GLY ARG VAL ILE GLY MET ILE ASP GLY GLY SEQRES 7 H 386 PHE LEU PRO ASN PRO VAL VAL ALA ASP ASP GLY SER PHE SEQRES 8 H 386 ILE ALA HIS ALA SER THR VAL PHE SER ARG ILE ALA ARG SEQRES 9 H 386 GLY GLU ARG THR ASP TYR VAL GLU VAL PHE ASP PRO VAL SEQRES 10 H 386 THR LEU LEU PRO THR ALA ASP ILE GLU LEU PRO ASP ALA SEQRES 11 H 386 PRO ARG PHE LEU VAL GLY THR TYR PRO TRP MET THR SER SEQRES 12 H 386 LEU THR PRO ASP GLY LYS THR LEU LEU PHE TYR GLN PHE SEQRES 13 H 386 SER PRO ALA PRO ALA VAL GLY VAL VAL ASP LEU GLU GLY SEQRES 14 H 386 LYS ALA PHE LYS ARG MET LEU ASP VAL PRO ASP CYS TYR SEQRES 15 H 386 HIS ILE PHE PRO THR ALA PRO ASP THR PHE PHE MET HIS SEQRES 16 H 386 CYS ARG ASP GLY SER LEU ALA LYS VAL ALA PHE GLY THR SEQRES 17 H 386 GLU GLY THR PRO GLU ILE THR HIS THR GLU VAL PHE HIS SEQRES 18 H 386 PRO GLU ASP GLU PHE LEU ILE ASN HIS PRO ALA TYR SER SEQRES 19 H 386 GLN LYS ALA GLY ARG LEU VAL TRP PRO THR TYR THR GLY SEQRES 20 H 386 LYS ILE HIS GLN ILE ASP LEU SER SER GLY ASP ALA LYS SEQRES 21 H 386 PHE LEU PRO ALA VAL GLU ALA LEU THR GLU ALA GLU ARG SEQRES 22 H 386 ALA ASP GLY TRP ARG PRO GLY GLY TRP GLN GLN VAL ALA SEQRES 23 H 386 TYR HIS ARG ALA LEU ASP ARG ILE TYR LEU LEU VAL ASP SEQRES 24 H 386 GLN ARG ASP GLU TRP ARG HIS LYS THR ALA SER ARG PHE SEQRES 25 H 386 VAL VAL VAL LEU ASP ALA LYS THR GLY GLU ARG LEU ALA SEQRES 26 H 386 LYS PHE GLU MET GLY HIS GLU ILE ASP SER ILE ASN VAL SEQRES 27 H 386 SER GLN ASP GLU LYS PRO LEU LEU TYR ALA LEU SER THR SEQRES 28 H 386 GLY ASP LYS THR LEU TYR ILE HIS ASP ALA GLU SER GLY SEQRES 29 H 386 GLU GLU LEU ARG SER VAL ASN GLN LEU GLY HIS GLY PRO SEQRES 30 H 386 GLN VAL ILE THR THR ALA ASP MET GLY SEQRES 1 J 386 GLN ASP ALA PRO GLU ALA GLU THR GLN ALA GLN GLU THR SEQRES 2 J 386 GLN GLY GLN ALA ALA ALA ARG ALA ALA ALA ALA ASP LEU SEQRES 3 J 386 ALA ALA GLY GLN ASP ASP GLU PRO ARG ILE LEU GLU ALA SEQRES 4 J 386 PRO ALA PRO ASP ALA ARG ARG VAL TYR VAL ASN ASP PRO SEQRES 5 J 386 ALA HIS PHE ALA ALA VAL THR GLN GLN PHE VAL ILE ASP SEQRES 6 J 386 GLY GLU ALA GLY ARG VAL ILE GLY MET ILE ASP GLY GLY SEQRES 7 J 386 PHE LEU PRO ASN PRO VAL VAL ALA ASP ASP GLY SER PHE SEQRES 8 J 386 ILE ALA HIS ALA SER THR VAL PHE SER ARG ILE ALA ARG SEQRES 9 J 386 GLY GLU ARG THR ASP TYR VAL GLU VAL PHE ASP PRO VAL SEQRES 10 J 386 THR LEU LEU PRO THR ALA ASP ILE GLU LEU PRO ASP ALA SEQRES 11 J 386 PRO ARG PHE LEU VAL GLY THR TYR PRO TRP MET THR SER SEQRES 12 J 386 LEU THR PRO ASP GLY LYS THR LEU LEU PHE TYR GLN PHE SEQRES 13 J 386 SER PRO ALA PRO ALA VAL GLY VAL VAL ASP LEU GLU GLY SEQRES 14 J 386 LYS ALA PHE LYS ARG MET LEU ASP VAL PRO ASP CYS TYR SEQRES 15 J 386 HIS ILE PHE PRO THR ALA PRO ASP THR PHE PHE MET HIS SEQRES 16 J 386 CYS ARG ASP GLY SER LEU ALA LYS VAL ALA PHE GLY THR SEQRES 17 J 386 GLU GLY THR PRO GLU ILE THR HIS THR GLU VAL PHE HIS SEQRES 18 J 386 PRO GLU ASP GLU PHE LEU ILE ASN HIS PRO ALA TYR SER SEQRES 19 J 386 GLN LYS ALA GLY ARG LEU VAL TRP PRO THR TYR THR GLY SEQRES 20 J 386 LYS ILE HIS GLN ILE ASP LEU SER SER GLY ASP ALA LYS SEQRES 21 J 386 PHE LEU PRO ALA VAL GLU ALA LEU THR GLU ALA GLU ARG SEQRES 22 J 386 ALA ASP GLY TRP ARG PRO GLY GLY TRP GLN GLN VAL ALA SEQRES 23 J 386 TYR HIS ARG ALA LEU ASP ARG ILE TYR LEU LEU VAL ASP SEQRES 24 J 386 GLN ARG ASP GLU TRP ARG HIS LYS THR ALA SER ARG PHE SEQRES 25 J 386 VAL VAL VAL LEU ASP ALA LYS THR GLY GLU ARG LEU ALA SEQRES 26 J 386 LYS PHE GLU MET GLY HIS GLU ILE ASP SER ILE ASN VAL SEQRES 27 J 386 SER GLN ASP GLU LYS PRO LEU LEU TYR ALA LEU SER THR SEQRES 28 J 386 GLY ASP LYS THR LEU TYR ILE HIS ASP ALA GLU SER GLY SEQRES 29 J 386 GLU GLU LEU ARG SER VAL ASN GLN LEU GLY HIS GLY PRO SEQRES 30 J 386 GLN VAL ILE THR THR ALA ASP MET GLY SEQRES 1 L 131 ALA ASP ALA PRO ALA GLY THR ASP PRO ARG ALA LYS TRP SEQRES 2 L 131 VAL PRO GLN ASP ASN ASP ILE GLN ALA CYS ASP TYR TRP SEQRES 3 L 131 ARG HIS CYS SER ILE ASP GLY ASN ILE CYS ASP CYS SER SEQRES 4 L 131 GLY GLY SER LEU THR ASN CYS PRO PRO GLY THR LYS LEU SEQRES 5 L 131 ALA THR ALA SER TQQ VAL ALA SER CYS TYR ASN PRO THR SEQRES 6 L 131 ASP GLY GLN SER TYR LEU ILE ALA TYR ARG ASP CYS CYS SEQRES 7 L 131 GLY TYR ASN VAL SER GLY ARG CYS PRO CYS LEU ASN THR SEQRES 8 L 131 GLU GLY GLU LEU PRO VAL TYR ARG PRO GLU PHE ALA ASN SEQRES 9 L 131 ASP ILE ILE TRP CYS PHE GLY ALA GLU ASP ASP ALA MET SEQRES 10 L 131 THR TYR HIS CYS THR ILE SER PRO ILE VAL GLY LYS ALA SEQRES 11 L 131 SER SEQRES 1 M 131 ALA ASP ALA PRO ALA GLY THR ASP PRO ARG ALA LYS TRP SEQRES 2 M 131 VAL PRO GLN ASP ASN ASP ILE GLN ALA CYS ASP TYR TRP SEQRES 3 M 131 ARG HIS CYS SER ILE ASP GLY ASN ILE CYS ASP CYS SER SEQRES 4 M 131 GLY GLY SER LEU THR ASN CYS PRO PRO GLY THR LYS LEU SEQRES 5 M 131 ALA THR ALA SER TQQ VAL ALA SER CYS TYR ASN PRO THR SEQRES 6 M 131 ASP GLY GLN SER TYR LEU ILE ALA TYR ARG ASP CYS CYS SEQRES 7 M 131 GLY TYR ASN VAL SER GLY ARG CYS PRO CYS LEU ASN THR SEQRES 8 M 131 GLU GLY GLU LEU PRO VAL TYR ARG PRO GLU PHE ALA ASN SEQRES 9 M 131 ASP ILE ILE TRP CYS PHE GLY ALA GLU ASP ASP ALA MET SEQRES 10 M 131 THR TYR HIS CYS THR ILE SER PRO ILE VAL GLY LYS ALA SEQRES 11 M 131 SER MODRES 2J56 TQQ L 57 TRP MODRES 2J56 TQQ M 57 TRP HET TQQ L 57 16 HET TQQ M 57 16 HET CU A1106 1 HET CU B1106 1 HET GOL H1387 6 HET NA L1132 1 HET NA M1131 1 HETNAM TQQ (S)-2-AMINO-3-(6,7-DIHYDRO-6-IMINO-7-OXO-1H-INDOL-3- HETNAM 2 TQQ YL)PROPANOIC ACID HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN TQQ 3-[(6E)-6-IMINO-7-OXO-6,7-DIHYDRO-1H-INDOL-3-YL]-L- HETSYN 2 TQQ ALANINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 TQQ 2(C11 H11 N3 O3) FORMUL 7 CU 2(CU 2+) FORMUL 9 GOL C3 H8 O3 FORMUL 10 NA 2(NA 1+) FORMUL 12 HOH *1033(H2 O) HELIX 1 1 GLU H 12 GLY H 29 1 18 HELIX 2 2 THR H 269 ASP H 275 1 7 HELIX 3 3 GLU J 12 GLY J 29 1 18 HELIX 4 4 THR J 269 ASP J 275 1 7 HELIX 5 5 TRP L 26 CYS L 29 5 4 HELIX 6 6 CYS L 36 GLY L 40 5 5 HELIX 7 7 ARG L 99 ALA L 103 5 5 HELIX 8 8 ALA L 112 ALA L 116 5 5 HELIX 9 9 TRP M 26 CYS M 29 5 4 HELIX 10 10 CYS M 36 GLY M 40 5 5 HELIX 11 11 ARG M 99 ALA M 103 5 5 HELIX 12 12 ALA M 112 ALA M 116 5 5 SHEET 1 AA 3 ALA A 3 THR A 4 0 SHEET 2 AA 3 GLN A 76 PHE A 82 -1 O THR A 81 N THR A 4 SHEET 3 AA 3 PHE A 11 ALA A 12 -1 O PHE A 11 N ALA A 77 SHEET 1 AB 5 ALA A 3 THR A 4 0 SHEET 2 AB 5 GLN A 76 PHE A 82 -1 O THR A 81 N THR A 4 SHEET 3 AB 5 THR A 42 ASN A 47 -1 O VAL A 43 N LEU A 80 SHEET 4 AB 5 ILE A 21 ALA A 26 1 O ILE A 21 N THR A 44 SHEET 5 AB 5 LYS A 29 TYR A 30 -1 O LYS A 29 N ALA A 26 SHEET 1 AC 3 GLU A 34 VAL A 37 0 SHEET 2 AC 3 HIS A 95 VAL A 104 1 O LYS A 101 N LEU A 35 SHEET 3 AC 3 GLY A 86 CYS A 92 -1 O GLY A 86 N VAL A 104 SHEET 1 AD 2 HIS A 56 PHE A 57 0 SHEET 2 AD 2 LEU A 67 LYS A 68 -1 O LEU A 67 N PHE A 57 SHEET 1 BA 3 ALA B 3 THR B 4 0 SHEET 2 BA 3 GLN B 76 PHE B 82 -1 O THR B 81 N THR B 4 SHEET 3 BA 3 PHE B 11 ALA B 12 -1 O PHE B 11 N ALA B 77 SHEET 1 BB 5 ALA B 3 THR B 4 0 SHEET 2 BB 5 GLN B 76 PHE B 82 -1 O THR B 81 N THR B 4 SHEET 3 BB 5 THR B 42 ASN B 47 -1 O VAL B 43 N LEU B 80 SHEET 4 BB 5 ILE B 21 ALA B 26 1 O ILE B 21 N THR B 44 SHEET 5 BB 5 LYS B 29 TYR B 30 -1 O LYS B 29 N ALA B 26 SHEET 1 BC 3 LEU B 35 VAL B 37 0 SHEET 2 BC 3 HIS B 95 VAL B 104 1 O LYS B 101 N LEU B 35 SHEET 3 BC 3 GLY B 86 CYS B 92 -1 O GLY B 86 N VAL B 104 SHEET 1 BD 2 HIS B 56 PHE B 57 0 SHEET 2 BD 2 LEU B 67 LYS B 68 -1 O LEU B 67 N PHE B 57 SHEET 1 HA 4 ARG H 70 GLY H 77 0 SHEET 2 HA 4 THR H 59 ASP H 65 -1 O THR H 59 N GLY H 77 SHEET 3 HA 4 ARG H 46 ASP H 51 -1 O VAL H 47 N ILE H 64 SHEET 4 HA 4 VAL H 379 THR H 381 -1 O VAL H 379 N ASN H 50 SHEET 1 HB 4 ASN H 82 VAL H 85 0 SHEET 2 HB 4 ILE H 92 ARG H 101 -1 O ALA H 93 N VAL H 84 SHEET 3 HB 4 ARG H 104 PHE H 114 -1 O ARG H 104 N ARG H 101 SHEET 4 HB 4 PRO H 121 LEU H 127 -1 N THR H 122 O VAL H 113 SHEET 1 HC 4 THR H 142 LEU H 144 0 SHEET 2 HC 4 THR H 150 GLN H 155 -1 O LEU H 152 N SER H 143 SHEET 3 HC 4 ALA H 161 ASP H 166 -1 O ALA H 161 N GLN H 155 SHEET 4 HC 4 ALA H 171 ASP H 177 -1 O ALA H 171 N ASP H 166 SHEET 1 HD 4 CYS H 181 ALA H 188 0 SHEET 2 HD 4 THR H 191 CYS H 196 -1 O THR H 191 N THR H 187 SHEET 3 HD 4 LEU H 201 ALA H 205 -1 O ALA H 202 N MET H 194 SHEET 4 HD 4 GLU H 213 HIS H 216 -1 O GLU H 213 N ALA H 205 SHEET 1 HE 4 ALA H 232 SER H 234 0 SHEET 2 HE 4 ARG H 239 PRO H 243 -1 O ARG H 239 N SER H 234 SHEET 3 HE 4 LYS H 248 ASP H 253 -1 O HIS H 250 N TRP H 242 SHEET 4 HE 4 LYS H 260 GLU H 266 -1 O LYS H 260 N ASP H 253 SHEET 1 HF 3 TRP H 277 PRO H 279 0 SHEET 2 HF 3 ARG H 293 GLN H 300 -1 O ASP H 299 N ARG H 278 SHEET 3 HF 3 VAL H 285 HIS H 288 -1 O ALA H 286 N TYR H 295 SHEET 1 HG 4 TRP H 277 PRO H 279 0 SHEET 2 HG 4 ARG H 293 GLN H 300 -1 O ASP H 299 N ARG H 278 SHEET 3 HG 4 SER H 310 ASP H 317 -1 O PHE H 312 N VAL H 298 SHEET 4 HG 4 ARG H 323 ILE H 333 -1 N LEU H 324 O VAL H 315 SHEET 1 HH 4 SER H 335 VAL H 338 0 SHEET 2 HH 4 LEU H 345 SER H 350 -1 O TYR H 347 N ASN H 337 SHEET 3 HH 4 THR H 355 ASP H 360 -1 O THR H 355 N SER H 350 SHEET 4 HH 4 GLU H 366 VAL H 370 -1 N LEU H 367 O ILE H 358 SHEET 1 JA 4 ARG J 70 GLY J 77 0 SHEET 2 JA 4 THR J 59 ASP J 65 -1 O THR J 59 N GLY J 77 SHEET 3 JA 4 ARG J 46 ASP J 51 -1 O VAL J 47 N ILE J 64 SHEET 4 JA 4 VAL J 379 THR J 381 -1 O VAL J 379 N ASN J 50 SHEET 1 JB 4 ASN J 82 VAL J 85 0 SHEET 2 JB 4 ILE J 92 ARG J 101 -1 O ALA J 93 N VAL J 84 SHEET 3 JB 4 ARG J 104 PHE J 114 -1 O ARG J 104 N ARG J 101 SHEET 4 JB 4 PRO J 121 LEU J 127 -1 N THR J 122 O VAL J 113 SHEET 1 JC 4 THR J 142 LEU J 144 0 SHEET 2 JC 4 THR J 150 GLN J 155 -1 O LEU J 152 N SER J 143 SHEET 3 JC 4 ALA J 161 ASP J 166 -1 O ALA J 161 N GLN J 155 SHEET 4 JC 4 ALA J 171 ASP J 177 -1 O ALA J 171 N ASP J 166 SHEET 1 JD 4 CYS J 181 ALA J 188 0 SHEET 2 JD 4 THR J 191 CYS J 196 -1 O THR J 191 N THR J 187 SHEET 3 JD 4 LEU J 201 ALA J 205 -1 O ALA J 202 N MET J 194 SHEET 4 JD 4 GLU J 213 HIS J 216 -1 O GLU J 213 N ALA J 205 SHEET 1 JE 7 ALA J 232 SER J 234 0 SHEET 2 JE 7 ARG J 239 PRO J 243 -1 O ARG J 239 N SER J 234 SHEET 3 JE 7 LYS J 248 ASP J 253 -1 O HIS J 250 N TRP J 242 SHEET 4 JE 7 LYS J 260 PHE J 261 -1 O LYS J 260 N ASP J 253 SHEET 5 JE 7 LYS J 248 ASP J 253 -1 O ASP J 253 N LYS J 260 SHEET 6 JE 7 VAL J 265 GLU J 266 -1 O VAL J 265 N ILE J 249 SHEET 7 JE 7 LYS J 248 ASP J 253 -1 O ILE J 249 N VAL J 265 SHEET 1 JF 7 TRP J 277 PRO J 279 0 SHEET 2 JF 7 ARG J 293 GLN J 300 -1 O ASP J 299 N ARG J 278 SHEET 3 JF 7 VAL J 285 HIS J 288 -1 O ALA J 286 N TYR J 295 SHEET 4 JF 7 ARG J 293 GLN J 300 -1 O ARG J 293 N HIS J 288 SHEET 5 JF 7 ARG J 323 ILE J 333 0 SHEET 6 JF 7 SER J 310 ASP J 317 -1 O SER J 310 N ILE J 333 SHEET 7 JF 7 ARG J 293 GLN J 300 -1 O ILE J 294 N LEU J 316 SHEET 1 JG 4 SER J 335 VAL J 338 0 SHEET 2 JG 4 LEU J 345 SER J 350 -1 O TYR J 347 N ASN J 337 SHEET 3 JG 4 THR J 355 ASP J 360 -1 O THR J 355 N SER J 350 SHEET 4 JG 4 GLU J 366 VAL J 370 -1 N LEU J 367 O ILE J 358 SHEET 1 LA 2 ASP L 32 ASN L 34 0 SHEET 2 LA 2 PRO L 87 LEU L 89 -1 O CYS L 88 N GLY L 33 SHEET 1 LB 3 LYS L 51 LEU L 52 0 SHEET 2 LB 3 ASP L 76 CYS L 78 -1 O CYS L 78 N LYS L 51 SHEET 3 LB 3 TYR L 119 THR L 122 -1 N HIS L 120 O CYS L 77 SHEET 1 LC 3 ALA L 59 ASN L 63 0 SHEET 2 LC 3 GLN L 68 ILE L 72 -1 O GLN L 68 N ASN L 63 SHEET 3 LC 3 ILE L 126 SER L 131 -1 N VAL L 127 O LEU L 71 SHEET 1 MA 2 ASP M 32 ASN M 34 0 SHEET 2 MA 2 PRO M 87 LEU M 89 -1 O CYS M 88 N GLY M 33 SHEET 1 MB 3 LYS M 51 LEU M 52 0 SHEET 2 MB 3 ASP M 76 CYS M 78 -1 O CYS M 78 N LYS M 51 SHEET 3 MB 3 TYR M 119 THR M 122 -1 N HIS M 120 O CYS M 77 SHEET 1 MC 3 ALA M 59 ASN M 63 0 SHEET 2 MC 3 GLN M 68 ILE M 72 -1 O GLN M 68 N ASN M 63 SHEET 3 MC 3 ILE M 126 LYS M 129 -1 N VAL M 127 O LEU M 71 SSBOND 1 CYS H 181 CYS H 196 1555 1555 2.11 SSBOND 2 CYS J 181 CYS J 196 1555 1555 2.09 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.00 SSBOND 4 CYS L 29 CYS L 61 1555 1555 2.06 SSBOND 5 CYS L 36 CYS L 121 1555 1555 2.07 SSBOND 6 CYS L 38 CYS L 86 1555 1555 2.07 SSBOND 7 CYS L 46 CYS L 77 1555 1555 2.05 SSBOND 8 CYS L 78 CYS L 109 1555 1555 1.98 SSBOND 9 CYS M 23 CYS M 88 1555 1555 2.03 SSBOND 10 CYS M 29 CYS M 61 1555 1555 2.05 SSBOND 11 CYS M 36 CYS M 121 1555 1555 2.07 SSBOND 12 CYS M 38 CYS M 86 1555 1555 2.05 SSBOND 13 CYS M 46 CYS M 77 1555 1555 2.02 SSBOND 14 CYS M 78 CYS M 109 1555 1555 2.01 LINK C SER L 56 N TQQ L 57 1555 1555 1.34 LINK C TQQ L 57 N VAL L 58 1555 1555 1.33 LINK CE3 TQQ L 57 CD1 TRP L 108 1555 1555 1.73 LINK C SER M 56 N TQQ M 57 1555 1555 1.33 LINK C TQQ M 57 N VAL M 58 1555 1555 1.33 LINK CE3 TQQ M 57 CD1 TRP M 108 1555 1555 1.76 LINK ND1 HIS A 53 CU CU A1106 1555 1555 2.12 LINK SG CYS A 92 CU CU A1106 1555 1555 2.17 LINK ND1 HIS A 95 CU CU A1106 1555 1555 2.21 LINK SD MET A 98 CU CU A1106 1555 1555 2.49 LINK ND1 HIS B 53 CU CU B1106 1555 1555 2.03 LINK SG CYS B 92 CU CU B1106 1555 1555 2.27 LINK ND1 HIS B 95 CU CU B1106 1555 1555 2.05 LINK NA NA L1132 O HOH L2055 1555 1555 2.20 LINK NA NA M1131 O HOH M2072 1555 1555 2.42 SITE 1 AC1 4 HIS A 53 CYS A 92 HIS A 95 MET A 98 SITE 1 AC2 4 HIS B 53 CYS B 92 HIS B 95 MET B 98 SITE 1 AC3 5 ASP L 32 TQQ L 57 ASN L 104 ILE L 106 SITE 2 AC3 5 HOH L2055 SITE 1 AC4 5 ASP M 32 TQQ M 57 ASN M 104 ILE M 106 SITE 2 AC4 5 HOH M2072 SITE 1 AC5 8 ILE H 228 ASN H 229 HIS H 230 TRP H 282 SITE 2 AC5 8 GLN H 284 LYS H 307 HOH H2417 ASP L 105 CRYST1 123.029 123.029 245.303 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008128 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004077 0.00000