HEADER LIGASE 13-SEP-06 2J5B TITLE STRUCTURE OF THE TYROSYL TRNA SYNTHETASE FROM ACANTHAMOEBA POLYPHAGA TITLE 2 MIMIVIRUS COMPLEXED WITH TYROSYNOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-346; COMPND 5 SYNONYM: TYROSINE-TRNA LIGASE, TYRRS, TYROSYL-TRNA SYNTHETASE; COMPND 6 EC: 6.1.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACANTHAMOEBA POLYPHAGA MIMIVIRUS; SOURCE 3 ORGANISM_TAXID: 212035; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PDEST17 KEYWDS LIGASE, PROTEIN BIOSYNTHESIS, ATP-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.ABERGEL,J.RUDINGER-THIRION,R.GIEGE,J.M.CLAVERIE REVDAT 6 01-MAY-24 2J5B 1 REMARK HETSYN REVDAT 5 17-OCT-18 2J5B 1 HETSYN REVDAT 4 06-JUL-11 2J5B 1 VERSN REVDAT 3 23-MAR-10 2J5B 1 SOURCE KEYWDS AUTHOR JRNL REVDAT 3 2 1 REMARK MASTER REVDAT 2 24-FEB-09 2J5B 1 VERSN REVDAT 1 25-SEP-07 2J5B 0 JRNL AUTH C.ABERGEL,J.RUDINGER-THIRION,R.GIEGE,J.M.CLAVERIE JRNL TITL VIRUS-ENCODED AMINOACYL-TRNA SYNTHETASES: STRUCTURAL AND JRNL TITL 2 FUNCTIONAL CHARACTERIZATION OF MIMIVIRUS TYRRS AND METRS. JRNL REF J.VIROL. V. 81 12406 2007 JRNL REFN ISSN 0022-538X JRNL PMID 17855524 JRNL DOI 10.1128/JVI.01107-07 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.ABERGEL,S.CHENIVESSE,D.BYRNE,K.SUHRE,V.ARONDEL, REMARK 1 AUTH 2 J.-M.CLAVERIE REMARK 1 TITL MIMIVIRUS TYRRS: PRELIMINARY STRUCTURAL AND FUNCTIONAL REMARK 1 TITL 2 CHARACTERIZATION OF THE FIRST AMINO- ACYL TRNA SYNTHETASE REMARK 1 TITL 3 FOUND IN A VIRUS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 212 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16510997 REMARK 1 DOI 10.1107/S174430910500062X REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2137340.150 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2641 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8152 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 462 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.07000 REMARK 3 B22 (A**2) : 5.05000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.440 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.320 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.380 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.480 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 37.72 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : TYB.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : TYB.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CHAIN A WAS NOT MODELED. DISORDERED REMARK 3 REGION 142 TO 158 CHAIN B WAS NOT MODELED. DISORDERED REGION 223 REMARK 3 TO 226 CHAIN B WAS MODELED USING RESIDUAL DENSITY AND REMARK 3 STEREOCHEMISTRY. REMARK 4 REMARK 4 2J5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1290029956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52537 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 87.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: LOW RESOLUTION MAD STRUCTURE REMARK 200 REMARK 200 REMARK: STRUCTURE WAS SOLVED USING TYRRS WITH SELENO SUBSTITUTED REMARK 200 METHIONINE AND INCOMPLETE MAD DATASET AT 3.5 AMGSTROM REMARK 200 RESOLUTION. THE UNREFINED CONSTRUCTION WAS USED AS MODEL FOR REMARK 200 MOLECULAR REPLACEMENT WITH THE NATIVE DATASET REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.1 M SODIUM CITRATE BUFFER REMARK 280 PH 5.5, PEG 4000 8% (W/V), 15% MPD (V/V), 0.1M KCL, 1MM MGCL2 REMARK 280 DROPLET: 2 MICROL TYRRS 14 MG/ML IN 20 MM TRIS PH 7.4, 1MM REMARK 280 TYROSINOL, 1MM ATP 0.5 MICROL RESERVOIR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.75100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.44500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.44500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.75100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 THR A -4 REMARK 465 CYS A 142 REMARK 465 CYS A 143 REMARK 465 GLN A 144 REMARK 465 ILE A 145 REMARK 465 MET A 146 REMARK 465 GLY A 147 REMARK 465 ARG A 148 REMARK 465 ASN A 149 REMARK 465 GLU A 150 REMARK 465 SER A 151 REMARK 465 ASP A 152 REMARK 465 CYS A 153 REMARK 465 LEU A 154 REMARK 465 LYS A 155 REMARK 465 ALA A 156 REMARK 465 SER A 157 REMARK 465 GLN A 158 REMARK 465 PRO A 336 REMARK 465 SER A 337 REMARK 465 LYS A 338 REMARK 465 ALA B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 THR B -4 REMARK 465 ASP B -3 REMARK 465 HIS B -2 REMARK 465 ARG B 141 REMARK 465 CYS B 142 REMARK 465 CYS B 143 REMARK 465 GLN B 144 REMARK 465 ILE B 145 REMARK 465 MET B 146 REMARK 465 GLY B 147 REMARK 465 ARG B 148 REMARK 465 ASN B 149 REMARK 465 GLU B 150 REMARK 465 SER B 151 REMARK 465 ASP B 152 REMARK 465 CYS B 153 REMARK 465 LEU B 154 REMARK 465 LYS B 155 REMARK 465 ALA B 156 REMARK 465 SER B 157 REMARK 465 GLN B 158 REMARK 465 LYS B 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 335 CA C O CB CG CD OE1 REMARK 470 GLN A 335 NE2 REMARK 470 SER B 337 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 119.07 62.61 REMARK 500 TYR A 333 5.15 -66.44 REMARK 500 GLN A 334 -60.17 -107.17 REMARK 500 THR B 17 114.99 58.60 REMARK 500 LYS B 222 -120.60 -83.32 REMARK 500 MET B 223 144.27 -176.15 REMARK 500 SER B 224 -16.78 69.14 REMARK 500 LYS B 225 -81.09 -69.58 REMARK 500 SER B 226 35.12 -98.53 REMARK 500 CYS B 250 119.52 -160.28 REMARK 500 TYR B 333 22.15 -63.48 REMARK 500 GLN B 335 -146.22 -136.02 REMARK 500 PRO B 336 59.74 -55.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2016 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B2017 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B2041 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B2043 DISTANCE = 7.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYE A 1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYE B 1338 REMARK 999 REMARK 999 SEQUENCE REMARK 999 N TERMINAL EXTENSION DUE TO GATEWAY CLONING DBREF 2J5B A -6 338 UNP Q5UPJ7 SYY_MIMIV 2 346 DBREF 2J5B B -6 338 UNP Q5UPJ7 SYY_MIMIV 2 346 SEQADV 2J5B ALA A -9 UNP Q5UPJ7 EXPRESSION TAG SEQADV 2J5B GLY A -8 UNP Q5UPJ7 EXPRESSION TAG SEQADV 2J5B LEU A -7 UNP Q5UPJ7 EXPRESSION TAG SEQADV 2J5B MET A 58 UNP Q5UPJ7 ILE 66 CONFLICT SEQADV 2J5B ALA B -9 UNP Q5UPJ7 EXPRESSION TAG SEQADV 2J5B GLY B -8 UNP Q5UPJ7 EXPRESSION TAG SEQADV 2J5B LEU B -7 UNP Q5UPJ7 EXPRESSION TAG SEQADV 2J5B MET B 58 UNP Q5UPJ7 ILE 66 CONFLICT SEQRES 1 A 348 ALA GLY LEU GLU ASN THR ASP HIS THR ASN ASN GLU HIS SEQRES 2 A 348 ARG LEU THR GLN LEU LEU SER ILE ALA GLU GLU CYS GLU SEQRES 3 A 348 THR LEU ASP ARG LEU LYS GLN LEU VAL ASP SER GLY ARG SEQRES 4 A 348 ILE PHE THR ALA TYR ASN GLY PHE GLU PRO SER GLY ARG SEQRES 5 A 348 ILE HIS ILE ALA GLN ALA LEU ILE THR VAL MET ASN THR SEQRES 6 A 348 ASN ASN MET ILE GLU CYS GLY GLY GLN MET ILE ILE TYR SEQRES 7 A 348 ILE ALA ASP TRP PHE ALA LYS MET ASN LEU LYS MET ASN SEQRES 8 A 348 GLY ASP ILE ASN LYS ILE ARG GLU LEU GLY ARG TYR PHE SEQRES 9 A 348 ILE GLU VAL PHE LYS ALA CYS GLY ILE ASN LEU ASP GLY SEQRES 10 A 348 THR ARG PHE ILE TRP ALA SER GLU PHE ILE ALA SER ASN SEQRES 11 A 348 PRO SER TYR ILE GLU ARG MET LEU ASP ILE ALA GLU PHE SEQRES 12 A 348 SER THR ILE SER ARG VAL LYS ARG CYS CYS GLN ILE MET SEQRES 13 A 348 GLY ARG ASN GLU SER ASP CYS LEU LYS ALA SER GLN ILE SEQRES 14 A 348 PHE TYR PRO CYS MET GLN ALA ALA ASP VAL PHE GLU LEU SEQRES 15 A 348 VAL PRO GLU GLY ILE ASP ILE CYS GLN LEU GLY ILE ASP SEQRES 16 A 348 GLN ARG LYS VAL ASN MET LEU ALA ILE GLU TYR ALA ASN SEQRES 17 A 348 ASP ARG GLY LEU LYS ILE PRO ILE SER LEU SER HIS HIS SEQRES 18 A 348 MET LEU MET SER LEU SER GLY PRO LYS LYS LYS MET SER SEQRES 19 A 348 LYS SER ASP PRO GLN GLY ALA ILE PHE MET ASP ASP THR SEQRES 20 A 348 GLU GLN GLU VAL SER GLU LYS ILE SER ARG ALA TYR CYS SEQRES 21 A 348 THR ASP GLU THR PHE ASP ASN PRO ILE PHE GLU TYR ILE SEQRES 22 A 348 LYS TYR LEU LEU LEU ARG TRP PHE GLY THR LEU ASN LEU SEQRES 23 A 348 CYS GLY LYS ILE TYR THR ASP ILE GLU SER ILE GLN GLU SEQRES 24 A 348 ASP PHE SER SER MET ASN LYS ARG GLU LEU LYS THR ASP SEQRES 25 A 348 VAL ALA ASN TYR ILE ASN THR ILE ILE ASP LEU VAL ARG SEQRES 26 A 348 GLU HIS PHE LYS LYS PRO GLU LEU SER GLU LEU LEU SER SEQRES 27 A 348 ASN VAL LYS SER TYR GLN GLN PRO SER LYS SEQRES 1 B 348 ALA GLY LEU GLU ASN THR ASP HIS THR ASN ASN GLU HIS SEQRES 2 B 348 ARG LEU THR GLN LEU LEU SER ILE ALA GLU GLU CYS GLU SEQRES 3 B 348 THR LEU ASP ARG LEU LYS GLN LEU VAL ASP SER GLY ARG SEQRES 4 B 348 ILE PHE THR ALA TYR ASN GLY PHE GLU PRO SER GLY ARG SEQRES 5 B 348 ILE HIS ILE ALA GLN ALA LEU ILE THR VAL MET ASN THR SEQRES 6 B 348 ASN ASN MET ILE GLU CYS GLY GLY GLN MET ILE ILE TYR SEQRES 7 B 348 ILE ALA ASP TRP PHE ALA LYS MET ASN LEU LYS MET ASN SEQRES 8 B 348 GLY ASP ILE ASN LYS ILE ARG GLU LEU GLY ARG TYR PHE SEQRES 9 B 348 ILE GLU VAL PHE LYS ALA CYS GLY ILE ASN LEU ASP GLY SEQRES 10 B 348 THR ARG PHE ILE TRP ALA SER GLU PHE ILE ALA SER ASN SEQRES 11 B 348 PRO SER TYR ILE GLU ARG MET LEU ASP ILE ALA GLU PHE SEQRES 12 B 348 SER THR ILE SER ARG VAL LYS ARG CYS CYS GLN ILE MET SEQRES 13 B 348 GLY ARG ASN GLU SER ASP CYS LEU LYS ALA SER GLN ILE SEQRES 14 B 348 PHE TYR PRO CYS MET GLN ALA ALA ASP VAL PHE GLU LEU SEQRES 15 B 348 VAL PRO GLU GLY ILE ASP ILE CYS GLN LEU GLY ILE ASP SEQRES 16 B 348 GLN ARG LYS VAL ASN MET LEU ALA ILE GLU TYR ALA ASN SEQRES 17 B 348 ASP ARG GLY LEU LYS ILE PRO ILE SER LEU SER HIS HIS SEQRES 18 B 348 MET LEU MET SER LEU SER GLY PRO LYS LYS LYS MET SER SEQRES 19 B 348 LYS SER ASP PRO GLN GLY ALA ILE PHE MET ASP ASP THR SEQRES 20 B 348 GLU GLN GLU VAL SER GLU LYS ILE SER ARG ALA TYR CYS SEQRES 21 B 348 THR ASP GLU THR PHE ASP ASN PRO ILE PHE GLU TYR ILE SEQRES 22 B 348 LYS TYR LEU LEU LEU ARG TRP PHE GLY THR LEU ASN LEU SEQRES 23 B 348 CYS GLY LYS ILE TYR THR ASP ILE GLU SER ILE GLN GLU SEQRES 24 B 348 ASP PHE SER SER MET ASN LYS ARG GLU LEU LYS THR ASP SEQRES 25 B 348 VAL ALA ASN TYR ILE ASN THR ILE ILE ASP LEU VAL ARG SEQRES 26 B 348 GLU HIS PHE LYS LYS PRO GLU LEU SER GLU LEU LEU SER SEQRES 27 B 348 ASN VAL LYS SER TYR GLN GLN PRO SER LYS HET TYE A1336 12 HET TYE B1338 12 HETNAM TYE 4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PHENOL HETSYN TYE TYROSINOL; BOUND FORM OF TYROSINAL FORMUL 3 TYE 2(C9 H13 N O2) FORMUL 5 HOH *330(H2 O) HELIX 1 1 ASP A -3 SER A 10 1 14 HELIX 2 2 THR A 17 GLY A 28 1 12 HELIX 3 3 HIS A 44 CYS A 61 1 18 HELIX 4 4 ALA A 70 ASN A 77 1 8 HELIX 5 5 LEU A 78 GLY A 82 5 5 HELIX 6 6 ASP A 83 CYS A 101 1 19 HELIX 7 7 ASN A 104 ASP A 106 5 3 HELIX 8 8 ALA A 113 ASN A 120 1 8 HELIX 9 9 ASN A 120 LYS A 140 1 21 HELIX 10 10 PHE A 160 LEU A 172 1 13 HELIX 11 11 GLN A 186 ARG A 200 1 15 HELIX 12 12 ASP A 227 ALA A 231 5 5 HELIX 13 13 THR A 237 ALA A 248 1 12 HELIX 14 14 ASN A 257 LEU A 266 1 10 HELIX 15 15 LEU A 266 GLY A 272 1 7 HELIX 16 16 ASP A 283 SER A 292 1 10 HELIX 17 17 ASN A 295 PHE A 318 1 24 HELIX 18 18 LYS A 319 GLU A 322 5 4 HELIX 19 19 LEU A 323 TYR A 333 1 11 HELIX 20 20 THR B -1 ILE B 11 1 13 HELIX 21 21 THR B 17 GLY B 28 1 12 HELIX 22 22 HIS B 44 CYS B 61 1 18 HELIX 23 23 ALA B 70 ASN B 77 1 8 HELIX 24 24 LEU B 78 GLY B 82 5 5 HELIX 25 25 ASP B 83 CYS B 101 1 19 HELIX 26 26 ASN B 104 ASP B 106 5 3 HELIX 27 27 ALA B 113 ASN B 120 1 8 HELIX 28 28 ASN B 120 VAL B 139 1 20 HELIX 29 29 PHE B 160 ALA B 167 1 8 HELIX 30 30 ALA B 167 LEU B 172 1 6 HELIX 31 31 GLN B 186 ARG B 200 1 15 HELIX 32 32 SER B 226 ALA B 231 1 6 HELIX 33 33 THR B 237 ALA B 248 1 12 HELIX 34 34 ASN B 257 LEU B 266 1 10 HELIX 35 35 LEU B 266 GLY B 272 1 7 HELIX 36 36 ASP B 283 SER B 292 1 10 HELIX 37 37 ASN B 295 PHE B 318 1 24 HELIX 38 38 LYS B 319 GLU B 322 5 4 HELIX 39 39 LEU B 323 TYR B 333 1 11 SHEET 1 AA 6 GLU A 14 CYS A 15 0 SHEET 2 AA 6 ILE A 206 SER A 209 -1 N SER A 209 O GLU A 14 SHEET 3 AA 6 ILE A 179 CYS A 180 1 O CYS A 180 N LEU A 208 SHEET 4 AA 6 PHE A 31 PHE A 37 1 O THR A 32 N ILE A 179 SHEET 5 AA 6 GLY A 63 ILE A 69 1 O GLN A 64 N ALA A 33 SHEET 6 AA 6 THR A 108 TRP A 112 1 O ARG A 109 N ILE A 67 SHEET 1 AB 2 LEU A 274 LEU A 276 0 SHEET 2 AB 2 LYS A 279 TYR A 281 -1 O LYS A 279 N LEU A 276 SHEET 1 BA 6 GLU B 14 CYS B 15 0 SHEET 2 BA 6 ILE B 206 SER B 209 -1 N SER B 209 O GLU B 14 SHEET 3 BA 6 ILE B 179 CYS B 180 1 O CYS B 180 N LEU B 208 SHEET 4 BA 6 PHE B 31 PHE B 37 1 O THR B 32 N ILE B 179 SHEET 5 BA 6 GLY B 63 ILE B 69 1 O GLN B 64 N ALA B 33 SHEET 6 BA 6 THR B 108 TRP B 112 1 O ARG B 109 N ILE B 67 SHEET 1 BB 2 LEU B 274 LEU B 276 0 SHEET 2 BB 2 LYS B 279 TYR B 281 -1 O LYS B 279 N LEU B 276 SITE 1 AC1 7 TYR A 34 GLY A 36 TYR A 161 GLN A 165 SITE 2 AC1 7 ASP A 168 LEU A 182 GLN A 186 SITE 1 AC2 5 TYR B 34 GLY B 36 PHE B 37 GLN B 165 SITE 2 AC2 5 ASP B 168 CRYST1 63.502 107.300 148.890 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015748 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006716 0.00000 MTRIX1 1 -0.109620 -0.993550 -0.028860 106.36381 1 MTRIX2 1 -0.993940 0.109800 -0.004650 94.10122 1 MTRIX3 1 0.007790 0.028170 -0.999570 57.46155 1