HEADER LECTIN 21-SEP-06 2J5Z TITLE H-FICOLIN COMPLEXED TO GALACTOSE CAVEAT 2J5Z GLN A 64 HAS WRONG CHIRALITY AT ATOM CA GLU A 65 HAS WRONG CAVEAT 2 2J5Z CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FICOLIN-3; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: BINDING DOMAIN, RESIDUES 79-299; COMPND 5 SYNONYM: COLLAGEN/FIBRINOGEN DOMAIN-CONTAINING PROTEIN 3, COMPND 6 COLLAGEN/FIBRINOGEN DOMAIN-CONTAINING LECTIN 3 P35, HAKATA ANTIGEN, COMPND 7 H-FICOLIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: PLASMA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS HYDROXYLATION, LECTIN, COLLAGEN, IMMUNOLOGY, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.GARLATTI,C.GABORIAUD REVDAT 6 16-OCT-24 2J5Z 1 REMARK REVDAT 5 13-DEC-23 2J5Z 1 HETSYN REVDAT 4 29-JUL-20 2J5Z 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 03-APR-19 2J5Z 1 SOURCE REVDAT 2 24-FEB-09 2J5Z 1 VERSN REVDAT 1 23-JAN-07 2J5Z 0 JRNL AUTH V.GARLATTI,N.BELLOY,L.MARTIN,M.LACROIX,M.MATSUSHITA,Y.ENDO, JRNL AUTH 2 T.FUJITA,J.C.FONTECILLA-CAMPS,G.J.ARLAUD,N.M.THIELENS, JRNL AUTH 3 C.GABORIAUD JRNL TITL STRUCTURAL INSIGHTS INTO THE INNATE IMMUNE RECOGNITION JRNL TITL 2 SPECIFICITIES OF L- AND H-FICOLINS. JRNL REF EMBO J. V. 26 623 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17215869 JRNL DOI 10.1038/SJ.EMBOJ.7601500 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 68814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6561 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 346 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.606 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5470 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7457 ; 1.047 ; 1.905 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 684 ; 5.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;24.012 ;22.386 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 788 ;13.832 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;17.325 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 718 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4517 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2585 ; 0.224 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3643 ; 0.319 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 879 ; 0.192 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.211 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.247 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3358 ; 1.099 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5198 ; 1.639 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2474 ; 1.461 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2259 ; 2.083 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1290029826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2J3G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 172.74500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.10000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.37250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.10000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 259.11750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.10000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.37250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.10000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 259.11750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 172.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 56 REMARK 465 LEU A 57 REMARK 465 VAL A 58 REMARK 465 ASN A 59 REMARK 465 LEU A 60 REMARK 465 LEU A 61 REMARK 465 ARG A 62 REMARK 465 ASP B 56 REMARK 465 LEU B 57 REMARK 465 VAL B 58 REMARK 465 ASN B 59 REMARK 465 LEU B 60 REMARK 465 LEU B 61 REMARK 465 ARG B 62 REMARK 465 CYS B 63 REMARK 465 GLN B 64 REMARK 465 GLU B 65 REMARK 465 ASP C 56 REMARK 465 LEU C 57 REMARK 465 VAL C 58 REMARK 465 ASN C 59 REMARK 465 LEU C 60 REMARK 465 LEU C 61 REMARK 465 ARG C 62 REMARK 465 CYS C 63 REMARK 465 GLN C 64 REMARK 465 GLU C 65 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 ASN A 166 CG OD1 ND2 REMARK 470 PHE A 169 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 219 CG OD1 ND2 REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 ASN B 164 CG OD1 ND2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 ARG C 68 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 90 CG CD OE1 OE2 REMARK 470 LYS C 190 CG CD CE NZ REMARK 470 ILE C 225 CG1 CG2 CD1 REMARK 470 GLU C 248 CG CD OE1 OE2 REMARK 470 LYS C 253 CG CD CE NZ REMARK 470 TYR C 254 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 133 O HOH A 2060 1.86 REMARK 500 OE1 GLU B 248 O HOH B 2171 1.91 REMARK 500 OD1 ASN C 133 O HOH C 2037 2.01 REMARK 500 OE1 GLU B 161 NH1 ARG B 167 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 63 CA - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 CYS A 63 O - C - N ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU B 248 CA - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 GLU B 248 O - C - N ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 65 -88.77 105.61 REMARK 500 GLN A 114 -36.62 -150.98 REMARK 500 ASP A 115 -4.04 -153.39 REMARK 500 SER A 136 -110.87 -140.10 REMARK 500 SER A 192 -65.99 -94.55 REMARK 500 SER A 192 -68.13 -94.55 REMARK 500 ALA A 213 84.18 -151.16 REMARK 500 ALA A 233 -98.49 -103.65 REMARK 500 SER A 234 65.19 -151.96 REMARK 500 ASN A 239 54.72 -155.97 REMARK 500 GLU B 90 7.06 -68.20 REMARK 500 GLN B 114 -33.87 -151.16 REMARK 500 GLN B 114 -13.87 -165.33 REMARK 500 ASP B 115 -1.55 -148.53 REMARK 500 ASP B 115 -1.55 -155.10 REMARK 500 SER B 136 -105.71 -146.90 REMARK 500 ALA B 233 -101.71 -104.61 REMARK 500 ASN B 239 52.67 -154.99 REMARK 500 PRO C 67 -134.22 -69.77 REMARK 500 GLN C 114 -15.65 -173.41 REMARK 500 GLN C 114 -15.94 -173.41 REMARK 500 ASP C 115 -41.82 -136.37 REMARK 500 ASP C 115 -4.66 -153.43 REMARK 500 SER C 136 -110.67 -143.89 REMARK 500 SER C 192 -64.88 -90.93 REMARK 500 SER C 192 -65.86 -90.93 REMARK 500 ALA C 213 88.32 -151.06 REMARK 500 SER C 220 -169.19 -111.58 REMARK 500 SER C 220 -169.19 -120.68 REMARK 500 ALA C 233 -97.77 -102.63 REMARK 500 SER C 234 68.00 -152.87 REMARK 500 ASN C 239 53.43 -148.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1277 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD1 REMARK 620 2 ASP A 214 OD2 51.6 REMARK 620 3 ASP A 216 OD1 76.2 117.1 REMARK 620 4 SER A 218 O 159.2 148.0 84.4 REMARK 620 5 SER A 220 O 104.5 77.9 85.3 80.8 REMARK 620 6 HOH A2123 O 115.6 78.1 164.7 82.5 100.1 REMARK 620 7 HOH A2127 O 86.9 116.1 89.6 85.6 165.9 81.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1277 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 214 OD1 REMARK 620 2 ASP B 214 OD2 53.6 REMARK 620 3 ASP B 216 OD1 79.2 121.8 REMARK 620 4 SER B 218 O 158.9 147.2 85.4 REMARK 620 5 SER B 220 O 113.6 82.2 89.1 80.2 REMARK 620 6 HOH B2127 O 109.2 74.4 162.3 82.1 101.0 REMARK 620 7 HOH B2135 O 82.5 112.2 90.0 83.2 163.4 76.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1277 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 214 OD1 REMARK 620 2 ASP C 214 OD2 52.1 REMARK 620 3 ASP C 216 OD1 78.4 116.2 REMARK 620 4 SER C 218 O 154.7 153.1 84.4 REMARK 620 5 SER C 220 O 109.2 71.6 94.8 90.6 REMARK 620 6 HOH C2084 O 108.7 77.0 165.9 84.7 94.3 REMARK 620 7 HOH C2087 O 78.0 114.2 86.6 82.5 172.8 83.1 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LA5 RELATED DB: PDB REMARK 900 THEORITICAL MODEL OF HUMAN FICOLIN PRECURSOR REMARK 900 RELATED ID: 2J60 RELATED DB: PDB REMARK 900 H-FICOLIN COMPLEXED TO D-FUCOSE REMARK 900 RELATED ID: 2J64 RELATED DB: PDB REMARK 900 H-FICOLIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 DOMAIN C TERMINAL DBREF 2J5Z A 56 276 UNP O75636 FCN3_HUMAN 79 299 DBREF 2J5Z B 56 276 UNP O75636 FCN3_HUMAN 79 299 DBREF 2J5Z C 56 276 UNP O75636 FCN3_HUMAN 79 299 SEQADV 2J5Z LEU A 57 UNP O75636 PRO 80 CONFLICT SEQADV 2J5Z LEU B 57 UNP O75636 PRO 80 CONFLICT SEQADV 2J5Z LEU C 57 UNP O75636 PRO 80 CONFLICT SEQRES 1 A 221 ASP LEU VAL ASN LEU LEU ARG CYS GLN GLU GLY PRO ARG SEQRES 2 A 221 ASN CYS ARG GLU LEU LEU SER GLN GLY ALA THR LEU SER SEQRES 3 A 221 GLY TRP TYR HIS LEU CYS LEU PRO GLU GLY ARG ALA LEU SEQRES 4 A 221 PRO VAL PHE CYS ASP MET ASP THR GLU GLY GLY GLY TRP SEQRES 5 A 221 LEU VAL PHE GLN ARG ARG GLN ASP GLY SER VAL ASP PHE SEQRES 6 A 221 PHE ARG SER TRP SER SER TYR ARG ALA GLY PHE GLY ASN SEQRES 7 A 221 GLN GLU SER GLU PHE TRP LEU GLY ASN GLU ASN LEU HIS SEQRES 8 A 221 GLN LEU THR LEU GLN GLY ASN TRP GLU LEU ARG VAL GLU SEQRES 9 A 221 LEU GLU ASP PHE ASN GLY ASN ARG THR PHE ALA HIS TYR SEQRES 10 A 221 ALA THR PHE ARG LEU LEU GLY GLU VAL ASP HIS TYR GLN SEQRES 11 A 221 LEU ALA LEU GLY LYS PHE SER GLU GLY THR ALA GLY ASP SEQRES 12 A 221 SER LEU SER LEU HIS SER GLY ARG PRO PHE THR THR TYR SEQRES 13 A 221 ASP ALA ASP HIS ASP SER SER ASN SER ASN CYS ALA VAL SEQRES 14 A 221 ILE VAL HIS GLY ALA TRP TRP TYR ALA SER CYS TYR ARG SEQRES 15 A 221 SER ASN LEU ASN GLY ARG TYR ALA VAL SER GLU ALA ALA SEQRES 16 A 221 ALA HIS LYS TYR GLY ILE ASP TRP ALA SER GLY ARG GLY SEQRES 17 A 221 VAL GLY HIS PRO TYR ARG ARG VAL ARG MET MET LEU ARG SEQRES 1 B 221 ASP LEU VAL ASN LEU LEU ARG CYS GLN GLU GLY PRO ARG SEQRES 2 B 221 ASN CYS ARG GLU LEU LEU SER GLN GLY ALA THR LEU SER SEQRES 3 B 221 GLY TRP TYR HIS LEU CYS LEU PRO GLU GLY ARG ALA LEU SEQRES 4 B 221 PRO VAL PHE CYS ASP MET ASP THR GLU GLY GLY GLY TRP SEQRES 5 B 221 LEU VAL PHE GLN ARG ARG GLN ASP GLY SER VAL ASP PHE SEQRES 6 B 221 PHE ARG SER TRP SER SER TYR ARG ALA GLY PHE GLY ASN SEQRES 7 B 221 GLN GLU SER GLU PHE TRP LEU GLY ASN GLU ASN LEU HIS SEQRES 8 B 221 GLN LEU THR LEU GLN GLY ASN TRP GLU LEU ARG VAL GLU SEQRES 9 B 221 LEU GLU ASP PHE ASN GLY ASN ARG THR PHE ALA HIS TYR SEQRES 10 B 221 ALA THR PHE ARG LEU LEU GLY GLU VAL ASP HIS TYR GLN SEQRES 11 B 221 LEU ALA LEU GLY LYS PHE SER GLU GLY THR ALA GLY ASP SEQRES 12 B 221 SER LEU SER LEU HIS SER GLY ARG PRO PHE THR THR TYR SEQRES 13 B 221 ASP ALA ASP HIS ASP SER SER ASN SER ASN CYS ALA VAL SEQRES 14 B 221 ILE VAL HIS GLY ALA TRP TRP TYR ALA SER CYS TYR ARG SEQRES 15 B 221 SER ASN LEU ASN GLY ARG TYR ALA VAL SER GLU ALA ALA SEQRES 16 B 221 ALA HIS LYS TYR GLY ILE ASP TRP ALA SER GLY ARG GLY SEQRES 17 B 221 VAL GLY HIS PRO TYR ARG ARG VAL ARG MET MET LEU ARG SEQRES 1 C 221 ASP LEU VAL ASN LEU LEU ARG CYS GLN GLU GLY PRO ARG SEQRES 2 C 221 ASN CYS ARG GLU LEU LEU SER GLN GLY ALA THR LEU SER SEQRES 3 C 221 GLY TRP TYR HIS LEU CYS LEU PRO GLU GLY ARG ALA LEU SEQRES 4 C 221 PRO VAL PHE CYS ASP MET ASP THR GLU GLY GLY GLY TRP SEQRES 5 C 221 LEU VAL PHE GLN ARG ARG GLN ASP GLY SER VAL ASP PHE SEQRES 6 C 221 PHE ARG SER TRP SER SER TYR ARG ALA GLY PHE GLY ASN SEQRES 7 C 221 GLN GLU SER GLU PHE TRP LEU GLY ASN GLU ASN LEU HIS SEQRES 8 C 221 GLN LEU THR LEU GLN GLY ASN TRP GLU LEU ARG VAL GLU SEQRES 9 C 221 LEU GLU ASP PHE ASN GLY ASN ARG THR PHE ALA HIS TYR SEQRES 10 C 221 ALA THR PHE ARG LEU LEU GLY GLU VAL ASP HIS TYR GLN SEQRES 11 C 221 LEU ALA LEU GLY LYS PHE SER GLU GLY THR ALA GLY ASP SEQRES 12 C 221 SER LEU SER LEU HIS SER GLY ARG PRO PHE THR THR TYR SEQRES 13 C 221 ASP ALA ASP HIS ASP SER SER ASN SER ASN CYS ALA VAL SEQRES 14 C 221 ILE VAL HIS GLY ALA TRP TRP TYR ALA SER CYS TYR ARG SEQRES 15 C 221 SER ASN LEU ASN GLY ARG TYR ALA VAL SER GLU ALA ALA SEQRES 16 C 221 ALA HIS LYS TYR GLY ILE ASP TRP ALA SER GLY ARG GLY SEQRES 17 C 221 VAL GLY HIS PRO TYR ARG ARG VAL ARG MET MET LEU ARG HET CA A1277 1 HET GAL A1278 12 HET ACT A1279 4 HET CA B1277 1 HET CA C1277 1 HETNAM CA CALCIUM ION HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM ACT ACETATE ION HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 4 CA 3(CA 2+) FORMUL 5 GAL C6 H12 O6 FORMUL 6 ACT C2 H3 O2 1- FORMUL 9 HOH *485(H2 O) HELIX 1 1 ASN A 69 GLN A 76 1 8 HELIX 2 2 ASP A 101 GLY A 105 5 5 HELIX 3 3 SER A 123 GLY A 130 1 8 HELIX 4 4 GLY A 141 LEU A 150 1 10 HELIX 5 5 GLY A 179 HIS A 183 5 5 HELIX 6 6 LEU A 200 SER A 204 5 5 HELIX 7 7 ASN A 221 HIS A 227 1 7 HELIX 8 8 ASN B 69 GLN B 76 1 8 HELIX 9 9 ASP B 101 GLY B 105 5 5 HELIX 10 10 SER B 123 GLY B 130 1 8 HELIX 11 11 GLY B 141 THR B 149 1 9 HELIX 12 12 GLY B 179 HIS B 183 5 5 HELIX 13 13 LEU B 200 SER B 204 5 5 HELIX 14 14 ASN B 221 HIS B 227 1 7 HELIX 15 15 ASN C 69 GLN C 76 1 8 HELIX 16 16 ASP C 101 GLY C 105 5 5 HELIX 17 17 SER C 123 GLY C 130 1 8 HELIX 18 18 GLY C 141 LEU C 150 1 10 HELIX 19 19 GLY C 179 HIS C 183 5 5 HELIX 20 20 LEU C 200 SER C 204 5 5 HELIX 21 21 ASN C 221 HIS C 227 1 7 SHEET 1 AA 8 PHE A 131 GLY A 132 0 SHEET 2 AA 8 PHE A 138 TRP A 139 -1 O TRP A 139 N PHE A 131 SHEET 3 AA 8 TRP A 107 ARG A 113 -1 O ARG A 112 N PHE A 138 SHEET 4 AA 8 ALA A 93 ASP A 99 -1 O PHE A 97 N VAL A 109 SHEET 5 AA 8 LEU A 80 CYS A 87 -1 O GLY A 82 N CYS A 98 SHEET 6 AA 8 PHE B 131 ASN B 133 1 O GLY B 132 N SER A 81 SHEET 7 AA 8 PHE B 138 TRP B 139 -1 O TRP B 139 N PHE B 131 SHEET 8 AA 8 TRP B 107 ARG B 113 -1 O ARG B 112 N PHE B 138 SHEET 1 AB 6 PHE A 131 GLY A 132 0 SHEET 2 AB 6 PHE A 138 TRP A 139 -1 O TRP A 139 N PHE A 131 SHEET 3 AB 6 TRP A 107 ARG A 113 -1 O ARG A 112 N PHE A 138 SHEET 4 AB 6 ARG A 270 ARG A 276 -1 O VAL A 271 N ARG A 113 SHEET 5 AB 6 GLU A 155 GLU A 161 -1 O GLU A 155 N ARG A 276 SHEET 6 AB 6 ARG A 167 TYR A 172 -1 O THR A 168 N LEU A 160 SHEET 1 AC 2 PHE A 175 LEU A 177 0 SHEET 2 AC 2 LEU A 186 LEU A 188 -1 O ALA A 187 N ARG A 176 SHEET 1 CA 2 PHE C 175 LEU C 177 0 SHEET 2 CA 2 LEU C 186 LEU C 188 -1 O ALA C 187 N ARG C 176 SSBOND 1 CYS A 63 CYS A 87 1555 1555 2.03 SSBOND 2 CYS A 70 CYS A 98 1555 1555 2.06 SSBOND 3 CYS A 222 CYS A 235 1555 1555 2.03 SSBOND 4 CYS B 70 CYS B 98 1555 1555 2.05 SSBOND 5 CYS B 222 CYS B 235 1555 1555 2.05 SSBOND 6 CYS C 70 CYS C 98 1555 1555 2.05 SSBOND 7 CYS C 222 CYS C 235 1555 1555 2.03 LINK OD1 ASP A 214 CA CA A1277 1555 1555 2.54 LINK OD2 ASP A 214 CA CA A1277 1555 1555 2.50 LINK OD1 ASP A 216 CA CA A1277 1555 1555 2.35 LINK O SER A 218 CA CA A1277 1555 1555 2.49 LINK O SER A 220 CA CA A1277 1555 1555 2.28 LINK CA CA A1277 O HOH A2123 1555 1555 2.42 LINK CA CA A1277 O HOH A2127 1555 1555 2.36 LINK OD1 ASP B 214 CA CA B1277 1555 1555 2.43 LINK OD2 ASP B 214 CA CA B1277 1555 1555 2.43 LINK OD1 ASP B 216 CA CA B1277 1555 1555 2.29 LINK O SER B 218 CA CA B1277 1555 1555 2.37 LINK O SER B 220 CA CA B1277 1555 1555 2.39 LINK CA CA B1277 O HOH B2127 1555 1555 2.42 LINK CA CA B1277 O HOH B2135 1555 1555 2.37 LINK OD1 ASP C 214 CA CA C1277 1555 1555 2.64 LINK OD2 ASP C 214 CA CA C1277 1555 1555 2.31 LINK OD1 ASP C 216 CA CA C1277 1555 1555 2.25 LINK O SER C 218 CA CA C1277 1555 1555 2.35 LINK O SER C 220 CA CA C1277 1555 1555 2.27 LINK CA CA C1277 O HOH C2084 1555 1555 2.39 LINK CA CA C1277 O HOH C2087 1555 1555 2.45 CISPEP 1 SER A 234 CYS A 235 0 0.98 CISPEP 2 SER B 234 CYS B 235 0 7.89 CISPEP 3 SER C 234 CYS C 235 0 0.06 CRYST1 62.200 62.200 345.490 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002894 0.00000