HEADER HYDROLASE/INHIBITOR 06-NOV-06 2J9A TITLE BLLAP IN COMPLEX WITH MICROGININ FR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOL AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LEUCINE AMINOPEPTIDASE, LEUCYL AMINOPEPTIDASE, PROLINE COMPND 5 AMINOPEPTIDASE, LAP, PROLYL AMINOPEPTIDASE; COMPND 6 EC: 3.4.11.1, 3.4.11.5; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MICROGININ FR1; COMPND 9 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: EYE; SOURCE 6 TISSUE: LENS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MICROCYSTIS SP.; SOURCE 9 ORGANISM_TAXID: 1127 KEYWDS HYDROLASE, LEUCINE AMINOPEPTIDASE, ACETYLATION, AMINOPEPTIDASE, KEYWDS 2 MICROGININ, MICROCYSTINS, HYDROLASE-INHIBITOR COMPLEX METAL-BINDING, KEYWDS 3 PROTEASE, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.KRAFT,C.SCHLEBERGER,J.WECKESSER,G.E.SCHULZ REVDAT 6 13-DEC-23 2J9A 1 REMARK LINK REVDAT 5 08-MAY-19 2J9A 1 REMARK LINK REVDAT 4 05-SEP-12 2J9A 1 HEADER KEYWDS REMARK VERSN REVDAT 4 2 1 FORMUL REVDAT 3 24-FEB-09 2J9A 1 VERSN REVDAT 2 02-JAN-07 2J9A 1 JRNL REVDAT 1 06-DEC-06 2J9A 0 JRNL AUTH M.KRAFT,C.SCHLEBERGER,J.WECKESSER,G.E.SCHULZ JRNL TITL BINDING STRUCTURE OF THE LEUCINE AMINOPEPTIDASE INHIBITOR JRNL TITL 2 MICROGININ FR1. JRNL REF FEBS LETT. V. 580 6943 2006 JRNL REFN ISSN 0014-5793 JRNL PMID 17157838 JRNL DOI 10.1016/J.FEBSLET.2006.11.060 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 59562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3135 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4248 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3746 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 506 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4093 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5580 ; 1.590 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 544 ; 6.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;35.352 ;24.641 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 716 ;12.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3140 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2143 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2882 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 455 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 125 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 53 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2621 ; 1.389 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4105 ; 2.020 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1679 ; 3.501 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1453 ; 5.273 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1290030434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62705 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1BLL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP BLLAP 7MG/ML IN 50MM TRIS REMARK 280 -HCL PH7.8, 50UM ZNSO4, 200MM NACL EQUILIBRATED AGAINST 50MM REMARK 280 TRIS-HCL PH7.8, 50UM ZNSO4, 200MM NACL, 50% MPD, PH 7.80, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.40650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.40650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.40650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.40650 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.40650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.40650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 44400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 89010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -797.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 129.98200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 60.40650 REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 60.40650 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 129.98200 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -0.500000 0.866025 0.000000 64.99100 REMARK 350 BIOMT2 5 -0.866025 -0.500000 0.000000 112.56771 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 64.99100 REMARK 350 BIOMT2 6 -0.866025 -0.500000 0.000000 112.56771 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 60.40650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2012 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2086 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2419 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE MICROGININ FR1 IS PEPTIDE-LIKE, A MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: MICROGININ FR1 REMARK 400 CHAIN: D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 COMPONENT_2: RESIDUE AHY REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 486 REMARK 465 ALA A 487 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 408 O HOH A 2432 1.66 REMARK 500 OD1 ASP A 102 O HOH A 2160 1.75 REMARK 500 SG CYS A 344 O HOH A 2366 1.98 REMARK 500 CZ ARG A 408 O HOH A 2432 1.99 REMARK 500 NE2 GLN A 99 O HOH A 2153 2.02 REMARK 500 O HOH A 2458 O HOH A 2466 2.04 REMARK 500 O HOH A 2257 O HOH A 2483 2.05 REMARK 500 NE2 GLN A 155 O HOH A 2244 2.06 REMARK 500 O ARG A 425 O HOH A 2450 2.10 REMARK 500 OD1 ASP A 102 O HOH A 2158 2.12 REMARK 500 SG CYS A 344 O HOH A 2172 2.15 REMARK 500 O HOH A 2172 O HOH A 2366 2.17 REMARK 500 O THR A 1 O HOH A 2002 2.19 REMARK 500 O HOH A 2399 O HOH A 2496 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 458 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 87.78 -158.69 REMARK 500 LYS A 197 47.23 -81.53 REMARK 500 ASP A 291 60.06 36.20 REMARK 500 SER A 308 -176.06 -173.37 REMARK 500 ALA A 333 53.55 -93.92 REMARK 500 ASN A 350 66.04 31.98 REMARK 500 LYS A 457 -79.87 -101.43 REMARK 500 PRO A 471 55.00 -107.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2013 DISTANCE = 6.53 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1494 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 250 NZ REMARK 620 2 ASP A 255 OD2 170.2 REMARK 620 3 ASP A 273 OD2 98.1 89.0 REMARK 620 4 GLU A 334 OE2 94.7 78.3 92.3 REMARK 620 5 AHY D 1 N3 94.5 91.5 95.5 167.0 REMARK 620 6 AHY D 1 OH2 101.9 71.7 159.6 90.2 78.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1493 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 255 OD2 REMARK 620 2 ASP A 332 OD1 95.6 REMARK 620 3 ASP A 332 O 178.6 85.7 REMARK 620 4 GLU A 334 OE1 98.1 122.1 81.6 REMARK 620 5 AHY D 1 OH2 88.1 134.6 90.6 101.9 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AHY D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1489 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BLL RELATED DB: PDB REMARK 900 LEUCINE AMINOPEPTIDASE COMPLEX WITH AMASTATIN REMARK 900 RELATED ID: 1BPM RELATED DB: PDB REMARK 900 LEUCINE AMINOPEPTIDASE REMARK 900 RELATED ID: 1BPN RELATED DB: PDB REMARK 900 LEUCINE AMINOPEPTIDASE REMARK 900 RELATED ID: 1LAM RELATED DB: PDB REMARK 900 LEUCINE AMINOPEPTIDASE (UNLIGATED) REMARK 900 RELATED ID: 1LAN RELATED DB: PDB REMARK 900 LEUCINE AMINOPEPTIDASE COMPLEX WITH L-LEUCINAL REMARK 900 RELATED ID: 1LAP RELATED DB: PDB REMARK 900 LEUCINE AMINOPEPTIDASE REMARK 900 RELATED ID: 1LCP RELATED DB: PDB REMARK 900 BOVINE LENS LEUCINE AMINOPEPTIDASE COMPLEXED WITH L-LEUCINE REMARK 900 PHOSPHONIC ACID REMARK 900 RELATED ID: 2EWB RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF BOVINE LENS LEUCINE AMINOPEPTIDASEIN REMARK 900 COMPLEX WITH ZOFENOPRILAT DBREF 2J9A A 1 487 UNP P00727 AMPL_BOVIN 1 487 DBREF 2J9A D 2 5 PDB 2J9A 2J9A 2 5 SEQADV 2J9A PRO A 45 UNP P00727 SER 45 CONFLICT SEQADV 2J9A GLU A 485 UNP P00727 ASP 485 CONFLICT SEQRES 1 A 487 THR LYS GLY LEU VAL LEU GLY ILE TYR SER LYS GLU LYS SEQRES 2 A 487 GLU GLU ASP GLU PRO GLN PHE THR SER ALA GLY GLU ASN SEQRES 3 A 487 PHE ASN LYS LEU VAL SER GLY LYS LEU ARG GLU ILE LEU SEQRES 4 A 487 ASN ILE SER GLY PRO PRO LEU LYS ALA GLY LYS THR ARG SEQRES 5 A 487 THR PHE TYR GLY LEU HIS GLU ASP PHE PRO SER VAL VAL SEQRES 6 A 487 VAL VAL GLY LEU GLY LYS LYS THR ALA GLY ILE ASP GLU SEQRES 7 A 487 GLN GLU ASN TRP HIS GLU GLY LYS GLU ASN ILE ARG ALA SEQRES 8 A 487 ALA VAL ALA ALA GLY CYS ARG GLN ILE GLN ASP LEU GLU SEQRES 9 A 487 ILE PRO SER VAL GLU VAL ASP PRO CYS GLY ASP ALA GLN SEQRES 10 A 487 ALA ALA ALA GLU GLY ALA VAL LEU GLY LEU TYR GLU TYR SEQRES 11 A 487 ASP ASP LEU LYS GLN LYS ARG LYS VAL VAL VAL SER ALA SEQRES 12 A 487 LYS LEU HIS GLY SER GLU ASP GLN GLU ALA TRP GLN ARG SEQRES 13 A 487 GLY VAL LEU PHE ALA SER GLY GLN ASN LEU ALA ARG ARG SEQRES 14 A 487 LEU MET GLU THR PRO ALA ASN GLU MET THR PRO THR LYS SEQRES 15 A 487 PHE ALA GLU ILE VAL GLU GLU ASN LEU LYS SER ALA SER SEQRES 16 A 487 ILE LYS THR ASP VAL PHE ILE ARG PRO LYS SER TRP ILE SEQRES 17 A 487 GLU GLU GLN GLU MET GLY SER PHE LEU SER VAL ALA LYS SEQRES 18 A 487 GLY SER GLU GLU PRO PRO VAL PHE LEU GLU ILE HIS TYR SEQRES 19 A 487 LYS GLY SER PRO ASN ALA SER GLU PRO PRO LEU VAL PHE SEQRES 20 A 487 VAL GLY LYS GLY ILE THR PHE ASP SER GLY GLY ILE SER SEQRES 21 A 487 ILE LYS ALA ALA ALA ASN MET ASP LEU MET ARG ALA ASP SEQRES 22 A 487 MET GLY GLY ALA ALA THR ILE CYS SER ALA ILE VAL SER SEQRES 23 A 487 ALA ALA LYS LEU ASP LEU PRO ILE ASN ILE VAL GLY LEU SEQRES 24 A 487 ALA PRO LEU CYS GLU ASN MET PRO SER GLY LYS ALA ASN SEQRES 25 A 487 LYS PRO GLY ASP VAL VAL ARG ALA ARG ASN GLY LYS THR SEQRES 26 A 487 ILE GLN VAL ASP ASN THR ASP ALA GLU GLY ARG LEU ILE SEQRES 27 A 487 LEU ALA ASP ALA LEU CYS TYR ALA HIS THR PHE ASN PRO SEQRES 28 A 487 LYS VAL ILE ILE ASN ALA ALA THR LEU THR GLY ALA MET SEQRES 29 A 487 ASP ILE ALA LEU GLY SER GLY ALA THR GLY VAL PHE THR SEQRES 30 A 487 ASN SER SER TRP LEU TRP ASN LYS LEU PHE GLU ALA SER SEQRES 31 A 487 ILE GLU THR GLY ASP ARG VAL TRP ARG MET PRO LEU PHE SEQRES 32 A 487 GLU HIS TYR THR ARG GLN VAL ILE ASP CYS GLN LEU ALA SEQRES 33 A 487 ASP VAL ASN ASN ILE GLY LYS TYR ARG SER ALA GLY ALA SEQRES 34 A 487 CYS THR ALA ALA ALA PHE LEU LYS GLU PHE VAL THR HIS SEQRES 35 A 487 PRO LYS TRP ALA HIS LEU ASP ILE ALA GLY VAL MET THR SEQRES 36 A 487 ASN LYS ASP GLU VAL PRO TYR LEU ARG LYS GLY MET ALA SEQRES 37 A 487 GLY ARG PRO THR ARG THR LEU ILE GLU PHE LEU PHE ARG SEQRES 38 A 487 PHE SER GLN GLU SER ALA SEQRES 1 D 4 ALA MLE TYR TYR MODRES 2J9A MLE D 3 LEU N-METHYLLEUCINE HET MLE D 3 9 HET CL A1486 1 HET MPD A1487 8 HET MPD A1488 8 HET MPD A1489 8 HET DMS A1491 4 HET DMS A1492 4 HET ZN A1493 1 HET ZN A1494 1 HET AHY D 1 13 HETNAM MLE N-METHYLLEUCINE HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM ZN ZINC ION HETNAM AHY (2S,3R)-3-AMINO-2-HYDROXYDECANOIC ACID FORMUL 2 MLE C7 H15 N O2 FORMUL 3 CL CL 1- FORMUL 4 MPD 3(C6 H14 O2) FORMUL 7 DMS 2(C2 H6 O S) FORMUL 9 ZN 2(ZN 2+) FORMUL 11 AHY C10 H21 N O3 FORMUL 12 HOH *506(H2 O) HELIX 1 1 THR A 21 VAL A 31 1 11 HELIX 2 2 GLY A 33 GLY A 43 1 11 HELIX 3 3 HIS A 83 LEU A 103 1 21 HELIX 4 4 ASP A 115 TYR A 128 1 14 HELIX 5 5 ASP A 150 THR A 173 1 24 HELIX 6 6 THR A 179 SER A 195 1 17 HELIX 7 7 PRO A 204 GLN A 211 1 8 HELIX 8 8 MET A 213 LYS A 221 1 9 HELIX 9 9 ASN A 266 ASP A 273 5 8 HELIX 10 10 MET A 274 LEU A 290 1 17 HELIX 11 11 ALA A 333 THR A 348 1 16 HELIX 12 12 THR A 361 GLY A 369 1 9 HELIX 13 13 SER A 379 GLY A 394 1 16 HELIX 14 14 PHE A 403 ASP A 412 1 10 HELIX 15 15 ALA A 427 GLU A 438 1 12 HELIX 16 16 ALA A 451 VAL A 453 5 3 HELIX 17 17 PRO A 471 GLU A 485 1 15 SHEET 1 AA 5 THR A 51 HIS A 58 0 SHEET 2 AA 5 PHE A 61 GLY A 68 -1 O PHE A 61 N HIS A 58 SHEET 3 AA 5 GLY A 3 ILE A 8 1 O LEU A 4 N VAL A 65 SHEET 4 AA 5 SER A 107 VAL A 110 1 O SER A 107 N GLY A 3 SHEET 5 AA 5 SER A 142 LEU A 145 1 O SER A 142 N VAL A 108 SHEET 1 AB 8 THR A 198 ARG A 203 0 SHEET 2 AB 8 VAL A 228 LYS A 235 -1 O PHE A 229 N ARG A 203 SHEET 3 AB 8 ASN A 295 ASN A 305 -1 O ILE A 296 N TYR A 234 SHEET 4 AB 8 LEU A 245 GLY A 249 1 O LEU A 245 N VAL A 297 SHEET 5 AB 8 ILE A 354 ALA A 358 1 O ILE A 355 N VAL A 248 SHEET 6 AB 8 TRP A 445 ASP A 449 1 O ALA A 446 N ASN A 356 SHEET 7 AB 8 THR A 373 THR A 377 -1 O GLY A 374 N ASP A 449 SHEET 8 AB 8 VAL A 397 ARG A 399 1 O TRP A 398 N VAL A 375 SHEET 1 AC 4 THR A 198 ARG A 203 0 SHEET 2 AC 4 VAL A 228 LYS A 235 -1 O PHE A 229 N ARG A 203 SHEET 3 AC 4 ASN A 295 ASN A 305 -1 O ILE A 296 N TYR A 234 SHEET 4 AC 4 GLY A 251 ASP A 255 1 O GLY A 251 N CYS A 303 SHEET 1 AD 3 ASP A 316 ARG A 319 0 SHEET 2 AD 3 THR A 325 VAL A 328 -1 O ILE A 326 N VAL A 318 SHEET 3 AD 3 VAL A 418 ASN A 419 1 O VAL A 418 N GLN A 327 SHEET 1 AE 2 THR A 455 ASN A 456 0 SHEET 2 AE 2 GLY A 466 MET A 467 -1 O GLY A 466 N ASN A 456 LINK C1 AHY D 1 N ALA D 2 1555 1555 1.31 LINK C ALA D 2 N MLE D 3 1555 1555 1.35 LINK C MLE D 3 N TYR D 4 1555 1555 1.36 LINK NZ LYS A 250 ZN ZN A1494 1555 1555 2.15 LINK OD2 ASP A 255 ZN ZN A1493 1555 1555 2.03 LINK OD2 ASP A 255 ZN ZN A1494 1555 1555 2.55 LINK OD2 ASP A 273 ZN ZN A1494 1555 1555 2.03 LINK OD1 ASP A 332 ZN ZN A1493 1555 1555 1.93 LINK O ASP A 332 ZN ZN A1493 1555 1555 2.19 LINK OE1 GLU A 334 ZN ZN A1493 1555 1555 2.01 LINK OE2 GLU A 334 ZN ZN A1494 1555 1555 2.11 LINK ZN ZN A1493 OH2 AHY D 1 1555 1555 1.95 LINK ZN ZN A1494 N3 AHY D 1 1555 1555 2.21 LINK ZN ZN A1494 OH2 AHY D 1 1555 1555 2.15 CISPEP 1 ARG A 470 PRO A 471 0 3.34 CISPEP 2 TYR D 4 TYR D 5 0 -1.66 SITE 1 AC1 4 ALA A 333 ARG A 336 LEU A 360 HOH D2001 SITE 1 AC2 5 ASP A 255 ASP A 332 GLU A 334 ZN A1494 SITE 2 AC2 5 AHY D 1 SITE 1 AC3 6 LYS A 250 ASP A 255 ASP A 273 GLU A 334 SITE 2 AC3 6 ZN A1493 AHY D 1 SITE 1 AC4 9 GLN A 79 ASN A 81 THR A 377 ARG A 399 SITE 2 AC4 9 MET A 400 PRO A 401 LEU A 402 PHE A 403 SITE 3 AC4 9 HOH A2501 SITE 1 AC5 3 GLU A 177 VAL A 317 ARG A 319 SITE 1 AC6 15 LYS A 250 ASP A 255 LYS A 262 ASP A 273 SITE 2 AC6 15 ASP A 332 GLU A 334 THR A 359 LEU A 360 SITE 3 AC6 15 ARG A 425 ALA A 451 ZN A1493 ZN A1494 SITE 4 AC6 15 ALA D 2 MLE D 3 HOH D2001 SITE 1 AC7 8 ALA A 48 TRP A 82 ASN A 88 PRO A 461 SITE 2 AC7 8 HOH A2027 HOH A2431 HOH A2498 HOH A2499 SITE 1 AC8 7 HIS A 233 TYR A 234 PRO A 244 ASN A 295 SITE 2 AC8 7 VAL A 297 HOH A2322 HOH A2381 SITE 1 AC9 7 PRO A 44 LEU A 46 THR A 51 ARG A 52 SITE 2 AC9 7 GLN A 99 ASP A 102 HOH A2070 CRYST1 129.982 129.982 120.813 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007693 0.004442 0.000000 0.00000 SCALE2 0.000000 0.008884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008277 0.00000